genome.fa.s20.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  168  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50092663--50092700	20	1.9	20	84	10	51	60	0	5	34	1.19
50093076--50093110	14	2.5	14	86	13	54	40	2	5	51	1.40
50093842--50093908	4	17.2	4	92	6	93	19	0	29	50	1.48
50094397--50094446	21	2.3	21	86	10	66	38	0	0	62	0.96
50094397--50094455	23	2.7	22	84	10	68	40	0	0	59	0.97
50094410--50094560	57	2.6	56	81	10	137	43	0	1	54	1.11
50094441--50094530	26	3.3	25	70	20	74	47	0	3	48	1.18
50094417--50094582	60	2.8	58	83	8	169	43	1	1	53	1.22
50095882--50096170	97	3.0	96	86	5	365	41	2	16	40	1.60
50096219--50096510	126	2.3	126	86	1	415	33	17	20	28	1.95
50097654--50097696	18	2.4	18	88	0	59	44	9	27	18	1.80
50098302--50098326	7	3.6	7	100	0	50	60	12	0	28	1.32
50098881--50098921	19	2.2	19	86	8	57	65	7	19	7	1.41
50099400--50099460	21	3.0	20	80	7	77	14	22	26	36	1.93
50101510--50101540	13	2.4	13	94	0	53	67	0	0	32	0.91
50101577--50101606	11	2.7	11	100	0	60	50	0	20	30	1.49
50101573--50101615	11	3.9	11	90	0	59	46	0	23	30	1.52
50102606--50102643	5	8.0	5	82	11	53	65	0	0	34	0.93
50103144--50103195	24	2.2	24	92	0	86	34	1	7	55	1.39
50112653--50112703	21	2.4	21	86	0	75	27	7	33	31	1.85
50115669--50115718	10	4.8	10	79	18	57	76	6	0	18	0.99
50115819--50116635	149	5.4	151	84	7	1064	30	9	8	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50115819--50116635	307	2.7	305	90	2	1259	30	9	8	52	1.63
50116868--50116909	20	2.1	20	86	0	57	14	0	7	78	0.95
50128486--50128630	40	3.7	39	79	2	148	31	24	22	22	1.99
50128658--50128739	40	2.0	40	92	0	137	29	21	23	25	1.99
50128762--50128806	21	2.1	21	83	4	54	31	0	26	42	1.56
50128783--50128864	43	1.9	43	85	5	112	24	0	30	45	1.54
50128961--50128987	14	1.9	14	100	0	54	25	0	29	44	1.54
50129014--50129062	14	3.4	14	82	2	62	20	0	30	48	1.50
50129009--50129062	7	7.6	7	77	4	54	22	0	27	50	1.50
50129057--50129092	14	2.5	15	95	4	65	19	0	44	36	1.51
50129050--50129089	21	1.9	21	84	0	53	15	0	45	40	1.46
50129656--50129766	41	2.8	41	84	4	138	32	19	24	23	1.98
50130286--50130332	11	4.2	11	91	2	76	21	34	0	44	1.52
50130286--50130361	22	3.4	23	80	14	88	25	30	0	44	1.54
50130285--50130359	33	2.2	33	81	9	89	24	30	0	45	1.53
50130285--50130361	11	6.9	11	71	21	54	24	29	0	45	1.54
50130415--50130455	10	4.0	10	81	6	55	36	0	0	63	0.95
50132823--50132999	27	6.6	27	85	5	205	29	28	14	26	1.95
50132844--50132998	81	1.9	81	89	2	240	29	29	14	26	1.95
50140955--50141132	27	6.6	27	85	3	205	29	29	14	26	1.95
50140955--50141132	54	3.3	54	85	3	232	29	29	14	26	1.95
50140976--50141131	81	1.9	82	88	3	235	29	29	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50142617--50142655	18	2.2	18	95	0	69	23	30	7	38	1.83
50146308--50146560	125	2.0	125	93	0	434	30	23	16	28	1.97
50147222--50147340	58	2.0	59	85	7	163	26	9	20	43	1.81
50149557--50149596	9	4.4	9	93	0	71	42	22	10	25	1.84
50150321--50150387	23	2.9	23	88	4	91	35	8	23	31	1.86
50153332--50153365	18	1.9	17	88	5	50	44	0	0	55	0.99
50154360--50154501	58	2.4	59	86	9	200	40	17	19	22	1.92
50159087--50159130	17	2.5	17	85	7	52	50	13	2	34	1.55
50165296--50165350	16	3.3	17	79	20	55	69	1	27	1	1.09
50165309--50165350	21	2.0	22	85	4	59	71	0	26	2	0.98
50174051--50174092	19	2.2	20	82	4	50	50	0	2	47	1.14
50174553--50174674	36	3.4	35	67	15	95	16	21	16	45	1.85
50174550--50174733	73	2.5	73	86	1	244	15	21	18	44	1.87
50174617--50174743	37	3.5	36	70	11	105	15	22	18	43	1.88
50174553--50174711	36	4.4	35	69	14	92	15	20	18	44	1.86
50175662--50175686	6	4.2	6	100	0	50	80	0	0	20	0.72
50183790--50183833	18	2.4	19	84	7	63	20	4	0	75	0.98
50186796--50186838	21	1.9	24	86	13	65	41	6	4	46	1.51
50193577--50193635	31	1.9	31	82	6	75	61	1	11	25	1.40
50193902--50193954	28	1.9	27	85	11	72	41	11	3	43	1.58
50199714--50199767	21	2.6	21	81	0	72	42	24	16	16	1.88
50201876--50202075	68	3.0	68	75	18	222	42	4	4	49	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50201920--50201977	31	1.9	29	82	6	71	39	3	5	51	1.41
50203831--50203873	20	2.2	20	86	0	59	32	30	13	23	1.93
50207196--50207244	17	2.8	18	84	6	73	55	4	0	40	1.19
50207196--50207244	9	5.6	9	87	4	73	55	4	0	40	1.19
50207216--50207288	32	2.2	34	85	9	98	53	4	0	42	1.20
50214759--50214793	18	2.0	17	94	5	61	40	2	0	57	1.14
50214973--50215028	16	3.5	16	77	0	67	32	25	1	41	1.66
50214973--50215039	32	2.1	32	82	0	80	29	28	1	40	1.66
50216943--50216974	16	2.0	16	100	0	64	62	6	6	25	1.42
50217117--50217253	41	3.5	40	76	3	134	40	18	19	21	1.92
50217294--50217653	41	8.8	41	84	2	418	20	21	26	31	1.98
50218310--50218338	8	3.8	8	90	9	51	20	0	41	37	1.53
50218310--50218338	15	1.9	15	100	0	58	20	0	41	37	1.53
50218787--50218852	15	4.5	15	70	16	57	30	1	31	36	1.67
50218787--50218847	22	2.8	22	76	0	68	29	0	31	39	1.57
50221721--50221788	35	2.1	33	86	10	95	44	14	1	39	1.55
50221736--50221788	17	3.1	17	78	5	61	45	15	1	37	1.57
50221758--50221821	13	4.8	13	78	17	69	43	14	1	40	1.54
50221853--50221943	18	4.9	18	79	15	105	46	12	0	41	1.41
50221714--50221955	114	2.1	115	89	5	366	43	11	1	42	1.51
50221736--50221948	39	5.6	38	80	11	215	44	12	1	41	1.51
50221866--50221974	18	5.3	23	71	25	75	44	8	0	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50222028--50222056	12	2.4	12	100	0	58	58	0	0	41	0.98
50222055--50222548	9	57.7	9	65	17	189	46	19	1	32	1.59
50222054--50222509	34	14.0	34	66	21	176	46	18	1	33	1.58
50222051--50222548	25	19.8	25	70	15	196	46	19	1	32	1.58
50222141--50222170	12	2.5	12	94	0	51	43	10	6	40	1.64
50222224--50222489	41	6.7	41	72	14	148	46	19	0	33	1.55
50222192--50222471	96	2.9	96	90	2	416	46	20	0	32	1.55
50222265--50222369	55	1.9	55	86	3	149	45	19	0	34	1.57
50222189--50222530	118	2.7	129	74	15	161	46	19	0	32	1.56
50222361--50222546	59	3.2	59	94	1	313	45	21	0	32	1.56
50227709--50227746	19	2.0	19	94	0	67	28	10	2	57	1.45
50227778--50227804	11	2.5	11	100	0	54	33	0	0	66	0.92
50227954--50228219	43	6.3	42	80	4	257	23	18	29	28	1.97
50227954--50228219	85	3.1	85	80	6	279	23	18	29	28	1.97
50227946--50228246	128	2.4	127	79	1	332	24	17	29	28	1.97
50227954--50228280	85	3.8	86	78	4	225	23	18	29	29	1.98
50229796--50230123	165	2.0	165	93	0	557	42	17	8	31	1.79
50237201--50237235	15	2.3	15	90	0	52	48	2	5	42	1.41
50238463--50238568	42	2.5	42	84	0	158	48	15	13	23	1.80
50238479--50238547	20	3.3	22	76	10	81	47	13	15	23	1.80
50248253--50248412	43	3.8	42	92	2	257	35	23	22	18	1.96
50248253--50248412	85	1.9	85	92	0	266	35	23	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50248786--50248835	21	2.4	21	90	6	75	0	44	20	36	1.52
50254309--50254393	9	9.9	9	80	8	79	29	2	23	44	1.66
50254318--50254397	34	2.4	34	91	0	133	28	3	22	45	1.70
50254498--50254899	9	46.9	9	68	14	163	29	4	20	46	1.70
50254487--50254542	25	2.2	25	83	0	67	33	3	17	44	1.66
50254498--50254866	34	10.5	34	73	12	208	29	4	19	46	1.71
50254555--50254799	37	7.0	37	79	9	169	29	4	18	46	1.70
50254630--50254715	25	3.5	25	69	7	68	27	6	19	45	1.76
50254832--50254899	25	2.7	25	83	0	82	30	1	23	44	1.63
50254487--50254869	172	2.2	172	93	0	676	29	4	19	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189