genome.fa.s20.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  135  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39078420--39078625	74	2.8	73	86	7	265	25	20	20	33	1.97
39078385--39078667	74	3.8	74	80	5	225	24	20	21	33	1.97
39092261--39092304	22	2.0	22	90	0	70	47	6	9	36	1.62
39101090--39101139	19	2.5	19	81	15	57	72	2	14	12	1.22
39103265--39103309	19	2.3	19	80	3	54	75	2	17	4	1.07
39105186--39105382	44	4.2	44	67	21	107	34	18	19	28	1.95
39105044--39105416	142	2.6	142	93	0	620	33	17	20	28	1.95
39119391--39119461	27	2.6	27	86	0	106	25	26	22	25	2.00
39122432--39122538	37	2.8	38	81	8	112	24	24	21	29	1.99
39123109--39123388	27	10.4	27	84	1	312	18	17	21	42	1.89
39124331--39124369	14	2.6	15	88	8	53	66	7	25	0	1.18
39137360--39137490	39	3.4	38	90	5	208	29	3	21	45	1.69
39137360--39137508	39	3.8	38	87	3	102	31	4	20	43	1.71
39150581--39150623	21	2.0	22	82	13	54	62	0	0	37	0.95
39150683--39150743	21	2.9	21	75	4	52	45	3	3	47	1.35
39151002--39151054	20	2.7	20	80	8	63	22	16	9	50	1.74
39151428--39151647	78	2.9	73	71	15	201	21	18	6	53	1.67
39151581--39151673	41	2.3	41	87	5	134	22	16	5	55	1.61
39151454--39151676	98	2.3	96	75	14	206	22	18	5	53	1.66
39151608--39151670	21	3.0	21	76	23	78	23	15	3	57	1.53
39151769--39151847	39	2.1	39	83	6	101	25	18	6	49	1.71
39151422--39151906	20	25.0	20	67	18	181	21	17	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39151893--39151955	31	2.0	31	87	6	92	15	12	9	61	1.55
39152135--39152176	18	2.5	16	79	20	50	66	2	11	19	1.34
39153683--39154415	247	3.0	245	91	1	1108	31	11	21	35	1.90
39154176--39161511	713	10.5	710	81	6	7966	29	10	20	39	1.86
39159649--39161497	703	2.7	680	82	5	2104	29	10	19	40	1.85
39161790--39161828	20	2.0	20	89	0	60	10	12	10	66	1.44
39161789--39161903	19	5.8	20	73	12	67	16	15	7	60	1.58
39161812--39161973	20	8.3	19	70	16	55	19	16	4	59	1.55
39161911--39161977	19	3.5	18	76	11	62	17	16	1	64	1.37
39161899--39161947	21	2.4	21	89	3	73	22	18	2	57	1.51
39161910--39161984	39	1.9	39	84	10	100	16	20	1	62	1.39
39162623--39162662	19	2.0	19	85	9	53	45	5	5	45	1.47
39162628--39162683	20	2.8	19	79	12	60	41	8	3	46	1.52
39162713--39162761	10	4.9	10	80	9	55	59	2	4	34	1.28
39169209--39169256	24	2.0	24	100	0	96	33	4	20	41	1.72
39169570--39169611	23	1.9	21	90	9	66	59	0	0	40	0.97
39169654--39169678	8	3.1	8	100	0	50	84	0	0	16	0.63
39169606--39169669	31	2.1	30	85	8	85	67	0	1	31	1.00
39172113--39172262	21	7.1	21	68	3	86	41	18	24	16	1.89
39172113--39172267	42	3.7	42	83	3	177	41	17	25	15	1.88
39172113--39172267	84	1.8	84	83	2	204	41	17	25	15	1.88
39174245--39174274	15	2.0	15	100	0	60	60	13	6	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39176007--39176046	20	2.0	20	90	0	62	27	10	12	50	1.72
39175992--39176058	34	1.9	35	87	3	100	32	8	11	46	1.72
39178458--39178511	25	2.2	24	83	3	63	25	29	12	31	1.93
39178506--39178561	25	2.2	26	78	15	73	28	19	17	33	1.95
39183841--39183878	17	2.2	18	85	4	51	44	2	18	34	1.64
39189530--39189607	40	2.0	39	85	12	106	26	10	12	50	1.73
39192145--39192183	18	2.2	17	86	13	53	46	20	0	33	1.51
39193913--39193972	31	1.9	31	96	0	111	28	21	11	38	1.89
39196492--39196526	16	2.3	15	90	5	52	40	0	0	60	0.97
39198886--39198921	18	2.0	18	89	10	56	77	0	2	19	0.88
39200054--39200097	21	2.1	21	86	0	61	81	2	0	15	0.78
39206291--39206442	76	2.0	77	89	1	234	37	4	12	45	1.63
39209150--39209208	30	2.0	30	83	6	77	66	3	3	27	1.24
39209994--39210041	24	2.0	25	87	4	71	18	10	2	68	1.28
39210918--39211056	44	3.2	44	65	11	113	26	27	23	22	2.00
39211050--39211188	44	3.2	44	63	8	120	21	20	28	30	1.98
39210916--39211228	88	3.6	88	93	0	527	24	24	24	26	2.00
39211247--39211672	44	9.7	44	85	1	503	23	26	21	28	1.99
39213504--39213730	96	2.4	96	92	2	370	29	30	7	33	1.85
39213504--39213730	47	4.8	49	88	7	342	29	30	7	33	1.85
39217543--39217592	20	2.4	21	90	9	77	14	20	0	66	1.26
39217545--39217592	7	7.0	7	79	11	55	14	18	0	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39218436--39218475	20	2.0	20	85	0	53	5	22	0	72	1.04
39218466--39218539	6	12.7	6	81	5	53	12	9	8	70	1.34
39223880--39223928	24	2.0	26	84	8	66	16	10	2	71	1.22
39225181--39225279	46	2.2	46	92	0	162	34	9	8	48	1.64
39227227--39227353	45	2.8	45	91	0	200	35	23	15	25	1.94
39227350--39227545	51	3.9	51	79	3	225	31	27	17	23	1.97
39227357--39227541	101	1.8	101	89	3	291	31	27	17	23	1.97
39232994--39233053	30	2.0	30	83	3	75	41	0	38	20	1.52
39233346--39233376	9	3.4	9	90	0	53	38	22	12	25	1.90
39260147--39260189	3	14.3	3	85	0	59	4	0	27	67	1.10
39260383--39260467	45	1.9	44	85	2	116	42	3	2	51	1.31
39260392--39260506	45	2.6	45	80	2	124	40	6	1	51	1.37
39268649--39268686	15	2.4	17	86	8	53	15	7	13	63	1.51
39271565--39271788	39	5.8	40	80	13	245	27	29	19	24	1.98
39279618--39279867	40	6.3	40	84	5	310	28	28	20	24	1.99
39283168--39283273	55	1.9	55	94	0	185	21	33	19	25	1.97
39283171--39283300	55	2.4	55	84	2	145	20	34	19	25	1.96
39291335--39291377	20	2.1	21	86	4	61	48	9	18	23	1.76
39312823--39312891	20	3.5	20	77	15	70	26	30	11	31	1.91
39328163--39328231	20	3.5	20	77	15	70	26	30	11	31	1.91
39344479--39344556	40	2.0	40	86	0	111	43	15	10	30	1.80
39354406--39354438	11	3.0	11	83	16	50	27	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39355701--39355739	20	2.0	20	89	0	60	25	35	20	17	1.95
39357638--39357667	15	1.9	16	93	6	53	63	0	10	26	1.26
39360616--39360646	16	1.9	16	93	0	53	64	0	9	25	1.24
39379109--39379238	40	3.3	39	78	6	145	29	27	19	23	1.98
39382893--39383022	39	3.3	39	82	6	156	26	28	21	23	1.99
39390736--39390920	40	4.7	40	80	5	169	26	28	20	24	1.99
39390738--39390844	39	2.7	39	88	1	142	26	28	20	24	1.99
39392419--39392547	40	3.2	40	84	2	170	24	19	27	28	1.99
39402750--39402796	19	2.3	20	82	10	60	27	34	8	29	1.87
39417522--39417693	84	2.0	84	98	0	335	34	11	12	41	1.80
39437617--39437663	11	4.0	11	86	10	67	72	8	2	17	1.19
39437620--39437664	12	3.7	12	96	3	81	77	6	2	13	1.05
39437620--39437666	13	3.7	13	91	5	78	76	6	2	14	1.08
39437706--39437758	14	3.6	14	85	12	70	64	5	9	20	1.44
39437720--39437758	17	2.3	17	95	0	69	66	5	10	17	1.39
39477345--39477520	56	3.1	56	99	0	343	44	9	23	22	1.81
39478657--39478840	40	4.6	39	82	9	203	24	22	27	25	2.00
39478709--39478873	79	2.1	79	84	6	210	26	21	27	25	1.99
39490582--39490648	25	2.6	25	95	2	116	52	13	19	14	1.75
39490577--39490648	13	5.8	12	73	11	56	52	13	18	15	1.74
39492787--39492833	23	2.1	23	84	7	62	51	12	4	31	1.59
39496836--39496870	13	2.6	13	90	4	52	20	8	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39496836--39496876	14	2.9	14	92	0	73	24	12	0	63	1.28
39496916--39496956	11	3.7	11	96	0	73	12	0	9	78	0.98
39497946--39497992	23	2.1	23	84	7	62	51	12	4	31	1.59
39508957--39508992	18	1.9	19	88	5	56	55	19	13	11	1.68
39523082--39523111	11	2.7	11	94	0	51	0	13	6	80	0.91
39534498--39534598	52	1.9	52	95	0	184	32	21	18	26	1.97
39540845--39540945	52	1.9	52	95	0	184	32	21	18	26	1.97
39543383--39543411	13	2.2	13	100	0	58	13	6	0	79	0.93
39546004--39546054	20	2.5	20	87	0	75	25	31	13	29	1.94
39554012--39554063	22	2.4	22	96	0	95	23	3	46	26	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189