genome.fa.s20.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  126  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36088416--36088513	40	2.5	40	98	1	189	35	8	12	43	1.72
36091409--36091451	20	2.1	21	87	8	63	79	9	11	0	0.95
36091580--36091624	14	3.2	13	84	12	54	84	8	4	2	0.84
36104221--36104590	94	3.9	93	81	2	393	34	17	20	27	1.95
36104221--36104590	187	2.0	188	81	3	433	34	17	20	27	1.95
36108342--36108416	31	2.4	29	81	16	87	32	29	12	26	1.92
36108363--36108424	31	2.0	31	96	0	115	35	27	9	27	1.88
36108619--36108811	41	4.7	41	82	3	210	21	27	21	29	1.99
36116158--36116228	27	2.4	29	79	18	83	30	29	12	26	1.93
36116179--36116237	27	2.2	27	90	0	100	33	28	10	27	1.89
36116424--36116623	41	4.9	41	86	2	249	20	28	22	29	1.98
36121916--36121976	28	2.2	28	85	5	81	45	0	3	50	1.17
36122017--36122430	120	3.4	120	94	1	722	41	2	5	50	1.37
36122143--36122194	15	3.6	15	80	12	56	44	0	1	53	1.11
36122254--36122295	16	2.6	17	81	7	52	40	0	0	59	0.97
36122392--36122433	15	2.7	16	82	14	52	45	0	2	52	1.13
36122383--36122424	15	2.9	15	82	10	52	47	0	0	52	1.00
36122578--36122667	45	2.0	44	89	6	137	33	28	5	32	1.80
36122647--36122711	16	4.1	16	86	7	96	23	33	6	36	1.80
36125680--36126210	274	1.9	278	83	7	697	30	13	20	35	1.92
36128238--36128801	284	2.0	284	97	0	1067	28	17	16	37	1.92
36134413--36134545	71	1.9	71	81	6	162	27	15	10	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36134767--36134894	56	2.3	55	83	6	150	29	15	7	47	1.72
36134762--36134938	57	3.1	56	78	8	171	30	13	7	48	1.70
36139877--36139933	21	2.7	20	81	10	69	22	22	29	24	1.99
36143375--36143415	15	2.5	17	80	11	50	43	2	2	51	1.28
36147471--36147502	16	2.0	17	88	11	50	62	6	6	25	1.42
36165682--36165720	19	2.0	20	85	5	53	17	2	15	64	1.41
36173535--36173671	61	2.2	63	88	5	199	37	21	4	36	1.73
36174176--36174225	9	5.4	9	76	4	55	36	2	0	62	1.07
36177186--36177225	11	3.7	11	90	3	55	0	47	0	52	1.00
36177186--36177217	16	2.1	15	94	5	55	0	46	0	53	1.00
36177523--36177565	15	2.8	16	75	7	52	37	23	6	32	1.82
36183102--36183143	15	2.8	15	86	10	59	7	11	2	78	1.04
36183104--36183147	16	2.8	15	79	6	52	4	13	2	79	0.98
36183979--36184025	18	2.5	19	89	3	78	36	6	0	57	1.24
36187534--36187562	8	3.8	8	95	4	51	82	6	0	10	0.83
36187529--36187570	19	2.2	19	87	8	59	78	9	0	11	0.96
36189645--36190419	88	8.8	88	95	0	1361	26	23	25	24	2.00
36190440--36190668	95	2.4	95	94	0	404	30	18	20	30	1.97
36190653--36190772	44	2.7	44	78	7	127	30	14	26	29	1.95
36191061--36191110	25	2.0	25	92	0	82	58	32	0	10	1.31
36192257--36192301	3	14.7	3	86	4	63	33	2	0	64	1.06
36206218--36206287	37	1.9	36	82	8	88	52	2	2	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36213542--36213575	17	2.0	17	88	0	50	50	26	8	14	1.72
36217916--36218074	53	3.0	53	84	1	203	27	22	13	37	1.92
36221142--36221168	4	6.8	4	100	0	54	0	22	0	77	0.76
36223072--36223113	11	3.6	11	81	12	57	40	0	2	57	1.12
36225286--36225324	18	2.2	18	86	4	53	43	15	12	28	1.83
36225433--36225492	23	2.6	23	94	0	102	28	30	15	26	1.96
36226150--36226192	18	2.4	17	81	11	50	62	18	2	16	1.43
36228117--36228143	13	2.1	13	100	0	54	29	0	0	70	0.88
36229096--36229183	46	1.9	46	97	0	167	47	9	9	34	1.67
36233872--36233934	16	3.9	16	85	6	83	31	1	19	47	1.59
36233988--36234042	16	3.4	16	82	0	65	38	14	14	32	1.87
36236262--36236318	25	2.2	26	82	14	73	42	1	0	56	1.10
36239736--36239779	13	3.4	13	83	0	61	25	11	20	43	1.85
36240039--36240074	8	4.5	8	100	0	72	50	0	0	50	1.00
36240045--36240080	16	2.2	16	90	0	54	58	0	0	41	0.98
36240389--36240432	22	2.0	21	91	4	70	40	4	13	40	1.65
36240604--36240734	64	2.0	64	98	0	253	41	15	16	27	1.88
36247220--36247309	37	2.5	37	87	7	125	35	26	10	27	1.88
36247522--36247690	41	4.1	41	92	0	275	24	27	18	29	1.98
36247911--36247954	17	2.7	17	89	6	65	43	18	2	36	1.63
36259295--36259334	20	2.0	20	85	9	55	22	5	12	60	1.52
36259542--36259596	20	2.7	20	77	2	65	20	16	7	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36259542--36259648	41	2.6	39	77	11	101	20	15	8	55	1.66
36259885--36259923	20	2.0	20	90	10	62	28	15	2	53	1.55
36260076--36260126	21	2.5	20	81	9	57	41	7	0	50	1.31
36260498--36260687	20	9.5	20	66	23	71	56	9	14	18	1.65
36260970--36261060	40	2.3	40	84	3	112	58	8	15	17	1.62
36260958--36261060	20	5.2	20	70	4	82	58	9	14	17	1.63
36261092--36261191	20	4.9	21	75	12	84	55	6	17	22	1.63
36263396--36263456	26	2.4	26	79	15	65	31	6	1	60	1.32
36263429--36263476	21	2.3	21	85	7	62	29	6	2	62	1.31
36263427--36263508	24	3.5	24	74	12	73	31	7	3	57	1.44
36265535--36265619	38	2.2	38	91	0	143	36	22	9	31	1.86
36267212--36267263	15	3.3	16	86	10	72	32	19	7	40	1.80
36271034--36271072	20	2.0	20	84	0	51	69	0	25	5	1.09
36271079--36271114	9	4.0	9	96	0	63	47	33	19	0	1.50
36271101--36271140	3	13.3	3	94	0	71	65	32	2	0	1.06
36286564--36286602	20	2.0	20	90	10	62	56	5	23	15	1.59
36293509--36293684	31	5.7	31	89	0	237	30	6	15	47	1.71
36293513--36293684	93	1.9	92	88	1	263	30	6	15	47	1.72
36294111--36294143	16	2.1	16	100	0	66	30	0	18	51	1.46
36294958--36295005	19	2.6	18	83	6	51	31	22	25	20	1.98
36294978--36295014	19	1.9	19	88	0	56	29	24	21	24	1.99
36302511--36302553	16	2.6	16	81	3	50	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36302481--36302549	25	2.9	25	77	16	83	30	0	0	69	0.89
36304001--36304086	42	2.0	42	95	0	154	37	15	10	37	1.81
36313171--36313215	16	2.8	16	93	0	63	31	26	0	42	1.56
36313415--36313480	25	2.8	24	84	6	73	43	1	4	50	1.32
36313454--36313495	16	2.6	16	96	0	75	47	2	4	45	1.36
36315559--36316174	47	12.6	47	82	12	713	29	29	8	32	1.86
36315904--36315947	21	2.1	21	100	0	88	34	31	0	34	1.58
36315761--36316088	164	2.0	162	95	1	593	29	29	7	32	1.85
36315857--36315994	68	2.0	68	100	0	276	31	30	5	32	1.81
36315808--36316041	115	2.0	116	97	1	443	30	29	6	32	1.84
36321556--36321607	23	2.3	23	96	0	95	32	26	21	19	1.97
36331000--36331221	40	5.7	40	84	8	278	24	22	27	25	2.00
36331000--36331221	78	2.8	79	86	5	290	24	22	27	25	2.00
36331000--36331254	118	2.2	118	80	10	274	25	21	27	25	2.00
36338858--36339110	116	2.2	118	80	9	279	25	21	27	25	1.99
36338859--36339077	38	5.6	38	84	9	237	24	21	28	25	1.99
36346812--36346920	37	2.9	37	79	15	118	23	22	26	27	1.99
36346765--36346922	37	4.3	37	73	19	111	22	22	29	25	1.99
36360691--36360720	14	2.1	14	100	0	60	10	46	20	23	1.80
36373289--36373339	21	2.4	22	83	6	61	7	21	1	68	1.25
36379053--36379098	17	2.7	17	93	0	74	30	30	23	15	1.95
36382404--36382508	52	2.0	53	84	1	140	34	13	20	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36388405--36388466	32	1.9	32	96	0	115	27	0	37	35	1.57
36391461--36391550	42	2.1	42	83	4	110	24	24	22	28	1.99
36393143--36393188	21	2.3	20	78	14	51	45	17	6	30	1.73
36400495--36400548	27	2.0	27	88	0	81	72	16	0	11	1.12
36400762--36400827	13	5.1	13	78	7	80	27	7	25	39	1.83
36406500--36406724	80	2.8	79	82	4	256	25	21	28	25	1.99
36406500--36406722	40	5.6	39	81	7	225	25	21	27	25	1.99
36406580--36406757	79	2.2	80	82	3	200	25	21	28	24	1.99
36413640--36413690	17	3.1	16	76	23	52	56	0	3	39	1.18
36414626--36414663	17	2.2	18	90	4	60	52	0	2	44	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189