genome.fa.s20.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  130  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37469169--37469267	36	2.6	38	75	15	105	41	1	24	33	1.62
37474846--37474924	34	2.3	33	82	6	86	32	18	20	27	1.96
37474926--37474985	29	2.0	32	87	9	90	41	16	13	28	1.86
37475386--37475562	27	6.6	27	83	2	221	21	16	19	41	1.90
37475386--37475564	81	2.2	82	85	4	247	21	16	20	41	1.90
37476152--37476546	29	13.8	29	77	7	315	36	23	15	24	1.94
37477171--37477345	29	6.2	29	70	14	98	37	25	12	25	1.90
37477176--37477327	82	1.9	82	88	2	234	34	25	13	26	1.93
37477280--37477347	29	2.3	30	92	5	113	38	25	10	26	1.88
37477106--37477583	252	1.9	252	86	0	688	33	22	15	27	1.95
37477514--37477756	29	8.4	29	75	5	179	39	21	14	23	1.91
37478401--37478737	29	11.8	29	74	6	213	37	21	16	25	1.93
37479362--37479440	29	2.7	29	88	3	106	35	22	15	26	1.94
37480758--37480821	28	2.3	27	78	7	74	29	21	26	21	1.99
37480930--37480982	26	2.0	26	85	0	70	33	18	26	20	1.96
37481052--37481300	32	7.8	32	73	7	143	36	22	21	19	1.95
37481052--37481171	64	1.9	64	91	0	186	36	21	20	20	1.95
37481059--37481198	64	2.2	64	83	2	165	38	23	18	19	1.93
37481204--37481271	31	2.2	32	83	2	84	32	20	26	20	1.97
37481470--37481536	24	2.9	23	86	4	98	44	25	10	19	1.82
37481575--37481793	27	8.2	26	76	13	130	23	20	17	38	1.93
37481575--37481793	54	4.1	54	77	10	191	23	20	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37481599--37481809	81	2.6	81	84	5	232	23	18	18	39	1.92
37481624--37481814	27	7.1	27	82	4	192	22	18	18	40	1.92
37481613--37481810	54	3.7	54	83	4	222	22	18	19	39	1.92
37481770--37481822	27	2.0	27	81	7	63	24	15	20	39	1.91
37485584--37485760	92	1.9	91	82	5	223	44	3	4	48	1.40
37485783--37486188	120	3.4	120	95	2	719	43	2	5	48	1.40
37485897--37485931	18	2.0	17	88	5	52	45	0	0	54	0.99
37486017--37486051	18	2.0	17	88	5	52	45	0	0	54	0.99
37486137--37486171	18	2.0	17	88	5	52	45	0	0	54	0.99
37486526--37486578	16	3.2	16	89	5	88	37	35	0	26	1.57
37489222--37489285	19	3.4	19	72	18	62	40	12	9	37	1.75
37489233--37489288	19	2.9	19	84	12	78	35	16	10	37	1.83
37489365--37489582	20	11.1	20	73	9	164	40	16	10	32	1.82
37489490--37489576	19	4.5	19	69	13	61	42	17	9	31	1.80
37489631--37489698	20	3.4	20	81	0	64	39	14	8	36	1.78
37489651--37489707	20	2.8	20	81	0	69	42	10	7	40	1.66
37489760--37489864	20	5.2	21	69	13	69	35	17	10	37	1.84
37489949--37489989	20	2.0	20	85	0	55	34	9	9	46	1.70
37489993--37490031	20	2.0	20	89	0	60	41	15	10	33	1.81
37500131--37500427	50	5.8	50	73	9	217	27	20	26	24	1.99
37510049--37510190	40	3.6	39	90	1	194	33	23	14	28	1.93
37511556--37511587	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37524443--37524488	23	2.0	23	95	4	85	43	15	15	26	1.85
37527895--37527937	17	2.5	17	78	14	52	51	11	4	32	1.59
37532106--37532335	120	1.9	120	94	0	406	34	28	10	26	1.89
37532752--37532796	20	2.2	20	80	0	54	17	17	22	42	1.89
37535638--37535715	27	2.9	27	81	7	104	16	20	20	42	1.89
37535639--37535741	54	1.9	54	82	11	131	19	22	17	40	1.91
37537819--37537898	37	2.2	36	83	14	103	40	1	2	56	1.21
37537819--37537900	11	7.4	11	70	22	55	40	1	2	56	1.20
37540676--37540777	43	2.4	43	81	0	132	22	33	27	16	1.96
37548787--37548815	14	2.0	15	93	6	51	27	0	20	51	1.47
37549007--37549063	28	2.0	28	90	6	89	57	1	3	36	1.26
37550790--37550935	41	3.6	41	81	9	147	26	19	30	23	1.98
37553159--37553345	44	4.3	44	65	11	123	24	22	22	29	1.99
37553438--37553717	44	6.4	43	69	8	163	28	20	18	32	1.96
37574036--37574106	35	2.0	35	84	10	92	29	23	8	38	1.85
37587723--37587781	30	1.9	31	86	3	84	47	6	22	23	1.75
37602180--37602414	50	4.6	50	84	3	263	22	30	21	26	1.99
37603879--37604072	105	1.9	101	82	6	246	27	25	14	31	1.95
37606634--37606667	12	2.8	12	81	0	50	61	0	23	14	1.33
37611637--37612085	47	9.5	46	93	2	675	29	29	8	32	1.87
37613616--37613756	42	3.3	43	89	3	205	24	31	20	23	1.98
37613617--37613817	85	2.4	85	82	3	237	29	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37617341--37617425	39	2.2	39	82	4	100	22	22	17	37	1.94
37617428--37617474	23	2.0	23	92	8	78	29	0	4	65	1.11
37617701--37617741	21	1.9	22	90	5	66	39	36	0	24	1.56
37617701--37617747	21	2.2	22	84	3	60	44	31	0	23	1.54
37617933--37617974	16	2.5	17	92	7	68	45	0	0	54	0.99
37618077--37618182	34	3.1	32	84	8	122	38	35	0	24	1.62
37618222--37618272	22	2.3	23	77	16	63	45	25	1	27	1.64
37618561--37618606	20	2.4	20	82	7	51	63	4	4	28	1.33
37618613--37618723	41	2.7	41	94	0	195	31	26	22	19	1.98
37623307--37623350	14	3.0	14	81	18	54	47	0	9	43	1.35
37625598--37625648	16	3.4	16	77	17	56	80	0	11	7	0.90
37625609--37625664	25	2.4	23	82	14	62	78	0	8	12	0.96
37625598--37625663	31	2.2	31	81	13	75	78	0	10	10	0.96
37627773--37627814	16	2.7	16	85	3	50	19	50	4	26	1.67
37635812--37635853	5	7.7	6	87	12	56	71	0	0	28	0.86
37635814--37635853	12	3.0	14	76	23	50	70	0	0	30	0.88
37635803--37635851	21	2.3	21	86	10	73	73	0	2	24	0.94
37648490--37648545	3	18.7	3	92	0	94	3	0	28	67	1.07
37649579--37649629	15	3.5	15	71	15	52	49	11	13	25	1.76
37650482--37650531	19	2.7	19	82	14	61	54	0	4	42	1.19
37653974--37654017	20	2.2	20	84	8	54	36	9	4	50	1.55
37657103--37657209	50	2.1	50	87	0	160	21	31	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37658951--37658991	21	2.1	19	86	9	55	36	29	7	26	1.83
37668625--37668739	22	5.1	22	75	14	108	41	17	23	17	1.89
37668625--37668750	47	2.7	46	84	6	166	41	16	23	18	1.90
37669844--37669951	5	21.6	5	78	12	107	56	1	1	39	1.21
37669833--37669955	15	8.1	15	73	14	76	54	1	1	42	1.20
37673759--37673787	9	3.2	9	100	0	58	34	31	0	34	1.58
37681667--37681716	15	3.3	15	86	5	66	36	18	0	46	1.49
37686693--37686754	27	2.3	27	97	0	115	61	1	4	32	1.27
37689515--37689805	50	5.8	50	86	1	352	21	29	20	27	1.98
37695620--37695671	24	2.2	24	89	0	77	38	3	5	51	1.44
37705773--37705880	29	3.7	29	70	1	81	25	17	18	37	1.93
37710546--37710711	78	2.2	78	94	2	291	42	6	15	35	1.73
37716131--37716186	17	3.4	17	69	16	55	17	21	42	17	1.89
37716125--37716167	17	2.3	19	76	19	54	11	23	44	20	1.84
37729828--37729868	20	2.0	20	85	0	55	46	21	0	31	1.52
37733912--37733955	20	2.2	21	88	8	65	20	18	4	56	1.58
37747400--37747624	40	5.7	40	84	5	260	25	27	21	24	1.99
37747402--37747624	119	1.9	120	83	6	292	25	27	21	25	2.00
37748750--37748868	55	2.1	56	98	1	231	21	24	9	44	1.81
37755920--37756003	42	2.0	42	100	0	168	26	9	26	38	1.87
37767290--37767319	8	3.8	8	90	0	51	53	16	23	6	1.66
37767290--37767321	16	2.0	16	100	0	64	50	18	25	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37768474--37768734	27	9.7	27	84	4	323	33	18	20	27	1.96
37768474--37768730	81	3.2	80	88	4	356	33	17	21	28	1.95
37768767--37768825	24	2.5	24	82	0	73	22	6	20	50	1.71
37768894--37768947	27	2.0	27	89	7	83	22	24	20	33	1.97
37768993--37769053	32	1.9	32	89	0	95	24	22	18	34	1.96
37770040--37770095	27	2.1	27	96	0	103	39	17	16	26	1.91
37776111--37776164	25	2.1	26	86	10	76	31	3	1	62	1.23
37782077--37782136	18	3.1	18	73	20	50	48	1	3	46	1.28
37782263--37782303	21	2.0	21	95	0	73	43	7	21	26	1.79
37786662--37786702	21	1.9	22	85	5	57	12	21	26	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189