genome.fa.s20.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  167  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919940--49919995	28	2.0	29	82	3	69	53	1	1	42	1.21
49919930--49920016	17	5.1	17	71	19	56	50	1	1	47	1.16
49921733--49921828	39	2.5	39	80	6	108	20	23	28	27	1.99
49923240--49923300	29	2.1	30	81	3	70	40	0	40	18	1.50
49923342--49923378	18	2.1	18	89	0	56	32	5	13	48	1.65
49937317--49937527	43	5.0	41	86	4	287	33	20	20	24	1.97
49937317--49937527	42	5.0	42	87	1	296	33	20	20	24	1.97
49937525--49937557	16	2.1	16	94	0	57	24	30	12	33	1.91
49943482--49943788	25	12.1	25	73	17	179	32	2	19	45	1.63
49943493--49943759	9	30.8	9	72	14	213	32	1	20	45	1.60
49943483--49943788	34	8.7	36	71	17	175	32	2	19	45	1.63
49943520--49943759	34	6.9	34	75	11	177	32	1	20	46	1.59
49943636--49943789	79	1.9	77	82	12	188	29	2	20	46	1.64
49943866--49943915	16	3.4	16	73	21	63	34	2	18	46	1.60
49943864--49943932	28	2.4	28	90	2	111	34	2	15	46	1.61
49944119--49944283	13	12.5	13	73	10	129	46	3	10	40	1.56
49944145--49944232	27	3.3	26	72	15	81	47	4	10	37	1.58
49944117--49944259	53	2.7	53	95	0	250	45	3	11	39	1.57
49944172--49944300	66	2.0	66	84	0	168	46	3	9	41	1.52
49944434--49944485	18	2.8	19	83	11	63	57	1	1	38	1.21
49945248--49945279	15	2.1	15	94	0	55	53	15	3	28	1.57
49946727--49947031	147	2.1	145	81	6	339	37	23	13	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49947750--49947793	13	3.1	14	87	9	63	50	43	0	6	1.29
49947757--49947802	7	6.7	7	80	5	58	47	47	0	4	1.21
49947750--49947802	27	1.9	28	88	3	81	47	45	0	7	1.31
49947757--49947802	14	3.4	13	88	8	65	47	47	0	4	1.21
49948165--49948204	14	2.9	14	80	0	53	40	45	0	15	1.46
49948239--49948279	20	2.0	20	85	0	55	39	46	0	14	1.45
49948183--49948339	81	1.9	81	87	5	228	44	27	0	28	1.55
49948412--49948444	14	2.3	15	94	5	59	36	33	0	30	1.58
49948807--49949403	114	5.3	115	81	6	610	27	24	21	26	1.99
49948948--49949413	227	2.1	227	85	1	630	27	25	21	26	1.99
49953678--49953728	5	10.2	5	83	8	68	41	17	0	41	1.50
49958485--49958529	16	2.8	16	77	9	56	55	0	0	44	0.99
49964871--49965440	44	12.6	44	71	16	219	31	16	22	30	1.96
49964879--49965165	89	3.2	88	73	14	287	29	15	25	30	1.96
49964914--49965257	45	7.6	47	72	18	180	30	16	22	31	1.95
49965009--49965291	41	6.5	41	70	15	174	30	18	20	31	1.96
49964857--49965258	181	2.2	181	93	0	669	30	16	22	30	1.96
49964914--49965212	96	3.2	94	75	12	341	29	15	23	31	1.95
49965274--49965448	49	3.8	48	79	5	182	34	17	21	27	1.95
49965317--49965470	44	3.4	44	81	9	141	32	18	20	29	1.96
49965552--49965647	44	2.2	45	86	1	131	34	21	13	30	1.92
49967163--49967274	60	1.9	60	81	5	138	33	8	2	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49967382--49967416	10	3.9	9	85	14	54	22	0	0	77	0.78
49967303--49967498	93	2.1	94	98	0	376	19	14	3	62	1.46
49968897--49969187	121	2.4	117	90	5	456	45	3	11	39	1.56
49969070--49969593	156	3.4	156	85	3	675	45	3	10	41	1.54
49972253--49972292	20	2.0	20	85	5	53	27	30	0	42	1.56
49972673--49972757	42	2.0	42	100	0	170	25	11	25	36	1.90
49979172--49979223	23	2.3	22	75	21	54	9	21	1	67	1.29
49979217--49979254	17	2.2	18	85	4	51	10	23	2	63	1.39
49987614--49987653	20	2.0	21	85	14	57	45	2	2	50	1.28
49990141--49990461	36	8.9	36	73	15	177	42	10	12	35	1.76
49990119--49990455	17	18.8	18	67	17	175	43	10	12	33	1.77
49990169--49990463	18	16.5	17	68	16	143	41	9	12	36	1.77
49991155--49991225	6	11.3	6	78	14	63	0	22	0	77	0.77
49991165--49991228	3	21.7	3	76	12	53	0	25	0	75	0.81
49991155--49991222	19	3.6	19	79	13	68	0	22	0	77	0.76
49991326--49991372	15	3.3	15	82	5	62	0	14	4	80	0.85
49991340--49991395	20	2.7	22	81	10	73	0	10	10	78	0.96
49991324--49991393	23	3.2	22	78	15	74	0	12	7	80	0.91
49991340--49991395	21	2.7	21	83	10	80	0	10	10	78	0.96
49991492--49991534	12	3.7	11	82	14	52	2	6	18	72	1.19
49991915--49992021	30	3.6	30	77	7	103	36	6	23	33	1.81
49992350--49992399	25	2.0	25	100	0	100	44	0	16	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49992379--49992640	75	3.4	75	89	2	380	35	20	15	29	1.93
49992901--49993239	75	4.5	76	86	5	474	36	18	16	28	1.93
50005204--50005255	6	8.3	6	80	16	52	75	1	3	19	1.06
50011384--50011501	37	3.1	38	86	6	150	43	10	11	35	1.74
50011443--50011681	17	13.5	18	71	15	151	42	10	11	34	1.76
50011395--50011562	36	4.5	37	80	9	164	42	10	11	35	1.74
50011480--50011553	16	4.3	16	75	13	58	41	10	12	35	1.77
50011441--50011694	35	7.2	35	74	11	171	41	10	11	36	1.76
50011443--50011694	70	3.6	66	76	10	227	41	10	11	36	1.76
50012423--50012480	19	3.1	18	78	7	62	0	18	0	81	0.70
50012417--50012480	11	6.3	10	83	13	60	1	17	0	81	0.77
50012574--50012635	22	2.8	24	78	11	69	3	11	9	75	1.14
50013131--50013240	30	3.7	30	79	4	125	38	4	21	35	1.74
50020669--50020749	17	4.6	17	75	20	78	56	2	2	38	1.26
50020695--50020748	19	2.9	19	79	15	60	57	0	1	40	1.09
50020975--50021031	29	1.9	30	82	3	71	47	0	31	21	1.51
50021677--50021713	9	4.1	9	85	0	56	43	13	10	32	1.79
50022211--50022290	17	4.6	17	70	23	60	36	3	5	55	1.40
50036426--50036459	15	2.3	15	90	10	52	61	17	14	5	1.52
50038797--50038833	19	1.9	19	94	0	65	29	13	10	45	1.77
50042671--50042711	21	2.0	21	90	0	64	29	21	29	19	1.98
50053321--50053492	86	2.0	85	90	3	274	43	8	12	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50054782--50055086	113	2.7	113	87	2	407	25	21	23	29	1.99
50055298--50055342	21	2.1	21	87	0	63	20	0	37	42	1.52
50055317--50055379	31	2.0	32	87	3	92	19	1	41	38	1.61
50055553--50055592	15	2.7	15	88	7	55	20	0	27	52	1.46
50057346--50057424	25	3.1	25	63	13	61	46	6	17	29	1.73
50057346--50057444	52	1.9	52	95	0	180	45	6	17	31	1.72
50058643--50058847	52	4.1	52	72	21	186	46	14	4	34	1.65
50058715--50058772	21	2.8	20	76	7	62	41	15	5	37	1.70
50058777--50058813	15	2.7	14	84	15	51	56	13	0	29	1.37
50058690--50058867	96	1.9	96	92	1	304	46	15	2	35	1.60
50058777--50058814	7	5.6	7	82	17	53	57	13	0	28	1.36
50058777--50058865	22	4.1	21	78	13	85	48	15	1	34	1.53
50058833--50058857	12	2.1	12	100	0	50	52	16	0	32	1.44
50058896--50059131	41	5.3	41	66	22	145	41	5	3	49	1.45
50058912--50059150	42	5.1	50	63	25	162	40	6	3	49	1.47
50058860--50059151	92	3.2	92	99	0	577	40	7	4	48	1.50
50059148--50059523	9	43.9	9	65	16	111	45	19	4	30	1.70
50059267--50059366	37	2.7	37	96	0	182	49	19	3	29	1.63
50059351--50059472	16	8.0	16	68	20	82	45	18	5	29	1.73
50059367--50059523	25	6.2	25	69	5	93	43	20	4	31	1.71
50065021--50065078	30	1.9	30	92	0	98	20	20	18	39	1.92
50066286--50066340	21	2.6	21	88	0	83	21	7	40	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50066602--50066653	22	2.3	22	77	9	52	50	5	1	42	1.37
50075337--50075387	21	2.4	22	77	9	61	41	0	3	54	1.19
50075710--50075790	24	3.3	24	94	1	135	40	2	0	56	1.12
50075712--50075794	25	3.3	25	89	5	132	38	2	0	59	1.11
50076982--50077007	4	6.5	4	100	0	52	0	23	0	76	0.78
50084930--50084982	25	2.1	25	85	3	70	37	1	3	56	1.28
50085544--50085664	25	5.3	21	66	29	54	49	4	2	43	1.35
50086091--50086160	29	2.3	29	85	4	86	22	12	15	48	1.79
50086438--50086474	19	1.9	20	88	5	58	2	27	0	70	1.01
50087588--50087620	15	2.1	16	94	5	59	48	12	9	30	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189