genome.fa.s20.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  174  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51737153--51737283	54	2.4	55	87	6	178	22	25	24	27	2.00
51739734--51739880	25	5.9	25	75	9	131	17	24	21	36	1.95
51739728--51739803	24	3.1	23	75	9	71	14	19	22	43	1.87
51741193--51741292	39	2.6	39	88	0	146	27	12	26	35	1.91
51745108--51745140	11	3.1	11	91	8	59	18	0	0	81	0.68
51745111--51745140	5	5.8	5	92	7	51	16	0	0	83	0.65
51749512--51749541	14	2.1	14	100	0	60	30	6	6	56	1.51
51753339--51753366	5	5.6	5	100	0	56	60	0	0	39	0.97
51753618--51753662	23	2.0	23	95	0	81	37	8	26	26	1.86
51759768--51759837	9	7.7	9	75	15	63	37	0	1	61	1.05
51759750--51759842	29	3.3	27	77	14	91	40	0	2	56	1.11
51759814--51759846	16	2.1	16	88	5	50	48	0	0	51	1.00
51771284--51771372	41	2.2	42	80	10	103	52	3	1	42	1.25
51772014--51772055	15	2.9	14	86	10	57	26	0	19	54	1.44
51772160--51772233	29	2.4	32	80	13	84	25	4	20	50	1.66
51774931--51774993	25	2.6	23	81	16	74	15	6	3	74	1.15
51774930--51774993	24	2.6	24	77	22	71	15	6	3	75	1.14
51774930--51775002	25	2.8	24	75	19	67	16	8	2	72	1.20
51775045--51775090	22	2.0	22	84	12	58	39	0	0	60	0.97
51775056--51775124	34	2.0	34	88	5	104	40	0	0	59	0.97
51775082--51775139	21	2.7	23	87	10	79	41	0	0	58	0.98
51775379--51775432	18	3.0	18	83	0	63	51	0	5	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51778076--51778208	30	4.4	30	79	6	135	24	21	23	30	1.99
51778076--51778208	60	2.2	60	86	2	178	24	21	23	30	1.99
51781439--51781498	32	1.9	31	86	3	84	46	3	3	46	1.35
51781617--51781651	7	4.7	7	89	10	52	71	0	0	28	0.86
51781708--51781769	22	2.8	22	78	9	72	56	0	1	41	1.09
51781708--51781769	21	2.8	23	80	9	74	56	0	1	41	1.09
51781746--51781775	15	2.0	15	93	0	51	43	0	0	56	0.99
51781731--51781802	34	2.1	34	87	5	101	56	0	0	43	0.99
51787676--51787708	3	11.0	3	100	0	66	66	0	0	33	0.92
51795160--51795204	3	15.3	3	86	4	65	28	2	2	66	1.15
51807638--51808050	44	9.5	43	72	10	218	31	20	21	27	1.98
51807901--51808062	87	1.9	87	84	2	218	29	20	24	25	1.99
51807637--51808166	214	2.5	214	84	4	559	31	20	22	26	1.98
51809531--51809573	20	2.2	20	86	0	59	30	9	2	58	1.42
51812878--51812973	27	3.5	27	95	4	167	39	13	0	46	1.43
51813012--51813097	27	3.2	27	83	4	104	30	23	26	19	1.98
51813171--51813240	19	3.7	19	82	3	88	37	7	0	55	1.27
51813176--51813246	37	1.9	37	94	0	124	39	8	0	52	1.32
51813804--51813874	37	1.9	37	97	0	133	49	0	9	40	1.36
51813804--51813878	18	4.1	18	76	6	71	52	0	9	38	1.34
51813810--51813878	19	3.7	19	78	5	88	52	0	8	39	1.33
51813953--51814038	27	3.2	26	85	4	102	19	26	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51814064--51814145	28	2.9	28	94	3	139	51	0	9	39	1.35
51814069--51814164	28	3.5	27	91	5	133	50	0	10	39	1.37
51814154--51814188	17	2.0	18	88	5	54	28	0	2	68	1.04
51814967--51815017	21	2.5	21	77	3	59	25	1	5	66	1.24
51816783--51816851	34	2.1	33	84	13	88	31	7	4	56	1.46
51830844--51830897	25	2.2	25	86	3	74	20	25	18	35	1.95
51833176--51833231	25	2.2	25	78	6	60	32	17	30	19	1.95
51833262--51833314	27	2.0	26	81	3	61	35	15	24	24	1.94
51835412--51835488	39	1.9	40	92	5	129	16	23	9	50	1.74
51837202--51837429	53	4.3	55	78	8	215	28	21	15	33	1.95
51839189--51839254	20	3.3	20	72	16	64	21	4	7	66	1.35
51839396--51839703	109	2.9	109	92	1	505	31	17	16	34	1.93
51841267--51841325	21	2.8	20	80	7	64	8	6	8	76	1.16
51841375--51841409	19	1.9	17	88	11	52	25	2	5	65	1.28
51841375--51841415	18	2.2	19	83	12	50	26	4	4	63	1.35
51844475--51844527	14	3.6	14	75	7	52	33	1	1	62	1.17
51846252--51846291	15	2.6	15	92	4	62	50	0	5	45	1.23
51847457--51847542	43	2.0	43	86	0	118	52	2	20	24	1.58
51847484--51847547	18	3.9	17	73	15	55	51	0	23	25	1.48
51848773--51848866	49	1.9	49	88	0	143	43	5	24	26	1.75
51849422--51849497	23	3.3	23	98	0	143	44	18	11	25	1.83
51849396--51849501	23	4.1	29	80	14	101	43	17	11	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51851796--51851840	23	2.0	23	82	8	56	33	4	11	51	1.58
51852422--51852648	42	5.5	42	83	4	248	29	20	22	27	1.98
51854854--51854878	13	1.9	13	100	0	50	40	24	4	32	1.73
51865507--51866013	144	3.4	155	82	8	652	25	17	21	35	1.95
51865507--51866013	76	6.7	77	84	6	646	25	17	21	35	1.95
51866547--51866649	30	3.5	29	81	7	127	28	17	5	48	1.70
51867237--51867290	22	2.7	19	81	15	65	79	0	14	5	0.90
51867223--51867290	21	3.2	22	87	4	86	82	0	11	5	0.83
51867495--51867639	78	1.8	79	82	4	186	30	37	23	8	1.86
51871606--51871827	10	22.7	9	67	23	87	35	1	3	60	1.21
51871703--51871772	22	3.3	21	79	16	74	37	1	0	61	1.05
51871691--51871827	41	3.5	38	75	18	113	35	0	2	62	1.13
51871606--51871828	19	11.9	18	66	24	74	35	1	3	60	1.21
51871724--51871832	11	9.8	11	67	23	50	36	0	1	61	1.07
51880973--51881000	14	2.0	14	100	0	56	21	0	0	78	0.75
51883294--51883362	35	2.0	34	82	2	84	42	26	7	24	1.80
51883585--51883610	7	3.7	7	100	0	52	46	0	23	30	1.53
51884797--51884855	20	3.0	20	80	11	61	62	1	6	28	1.30
51884844--51884874	13	2.3	14	94	5	55	83	6	3	6	0.88
51885015--51885050	18	2.0	18	88	0	54	69	2	0	27	1.02
51885633--51885666	5	6.6	5	86	6	50	79	0	5	14	0.91
51885633--51885666	16	2.2	15	89	5	50	79	0	5	14	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51885637--51885669	10	3.2	10	95	4	57	78	0	9	12	0.95
51885633--51885682	26	1.9	26	87	0	73	74	0	10	16	1.08
51886416--51887124	132	5.4	132	90	1	1055	28	23	18	28	1.98
51887110--51887570	89	5.2	89	87	3	678	26	22	18	32	1.97
51887110--51887570	178	2.6	178	93	0	771	26	22	18	32	1.97
51891716--51891755	20	2.0	20	95	0	71	32	15	22	30	1.94
51895491--51895551	20	3.0	20	83	7	70	62	1	6	29	1.30
51895540--51895570	13	2.3	14	94	5	55	83	6	3	6	0.88
51895703--51895771	3	22.3	3	72	16	52	63	2	0	33	1.09
51895703--51895771	21	3.2	21	78	12	77	63	2	0	33	1.09
51895705--51895771	34	2.0	34	82	5	82	64	2	0	32	1.09
51896331--51896364	5	6.6	5	86	6	50	79	0	5	14	0.91
51896331--51896365	16	2.2	16	89	0	52	80	0	5	14	0.89
51896331--51896380	26	1.9	26	88	8	75	76	0	8	16	1.02
51897136--51897171	12	2.9	12	88	8	54	19	0	5	75	1.00
51897329--51897359	15	2.1	15	93	0	53	41	19	19	19	1.90
51902687--51902722	16	2.2	16	95	0	63	52	5	2	38	1.39
51906096--51906154	31	1.9	31	86	6	84	40	8	13	37	1.75
51906414--51906485	30	2.3	32	77	13	80	37	11	18	33	1.86
51908879--51908928	17	2.7	20	78	18	70	10	0	44	46	1.37
51913518--51913567	17	2.7	20	78	18	70	10	0	44	46	1.37
51915515--51915556	16	2.5	17	80	3	50	66	2	14	16	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51916877--51916915	16	2.4	16	87	8	53	48	2	25	23	1.63
51917260--51917339	21	3.8	21	85	5	99	17	22	25	35	1.95
51930679--51930739	28	2.2	28	85	5	79	42	19	22	14	1.88
51934818--51934878	28	2.2	27	85	5	77	14	22	19	42	1.88
51940648--51940708	28	2.2	27	82	11	70	16	22	18	42	1.89
51946808--51946994	92	2.0	92	97	0	356	41	14	16	27	1.87
51955090--51955172	41	2.0	41	97	0	157	44	19	18	18	1.87
51970144--51970183	21	1.9	21	85	10	55	45	2	5	47	1.38
51971259--51971304	24	1.9	24	86	0	65	47	0	4	47	1.21
51975494--51975551	19	3.0	20	77	7	57	31	27	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189