genome.fa.s20.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  45  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13192686--13192894	114	1.8	114	88	0	319	32	10	25	31	1.90
13193703--13193736	17	2.1	17	88	5	52	50	0	17	32	1.47
13194604--13194703	42	2.4	42	93	0	164	35	10	29	26	1.89
13201258--13201304	24	2.0	24	95	0	85	46	38	4	10	1.58
13202432--13202461	3	10.0	3	100	0	60	33	0	0	66	0.92
13204667--13204710	19	2.3	20	84	7	56	27	20	11	40	1.86
13206757--13206822	10	6.9	10	86	10	102	89	10	0	0	0.49
13206759--13206820	18	3.4	18	95	4	115	88	11	0	0	0.51
13206758--13206821	19	3.4	19	91	4	112	89	10	0	0	0.50
13206757--13206823	1	67.0	1	78	0	71	89	10	0	0	0.48
13206834--13206875	18	2.3	19	87	4	59	83	0	14	2	0.75
13207705--13207735	9	3.6	9	91	8	55	83	0	6	9	0.79
13208960--13210154	44	27.8	44	67	15	384	30	19	21	28	1.97
13208911--13209984	175	6.2	174	92	1	1680	30	19	21	28	1.97
13209820--13210261	129	3.5	129	90	3	687	29	19	21	29	1.97
13218528--13218617	44	2.0	44	86	0	126	46	2	10	41	1.49
13218863--13218921	26	2.2	27	84	3	84	67	0	1	30	1.00
13218870--13218920	27	1.9	26	92	4	84	68	0	1	29	1.00
13220670--13220719	26	1.9	26	91	0	82	28	8	22	42	1.81
13236217--13236253	18	2.0	20	89	10	60	43	0	5	51	1.24
13236727--13236759	17	1.9	17	88	11	50	57	6	6	30	1.47
13239569--13239751	88	2.1	88	90	4	289	27	24	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13239611--13239795	44	4.2	44	75	5	167	26	24	21	27	1.99
13239585--13239792	88	2.4	86	84	8	249	26	25	20	27	1.99
13239848--13240559	89	8.0	89	88	0	1034	27	22	17	32	1.97
13241458--13241498	8	5.5	8	88	11	61	14	14	0	70	1.16
13241462--13241494	7	4.7	7	85	14	50	12	12	0	75	1.04
13244304--13244348	19	2.4	19	85	7	56	44	8	20	26	1.80
13244374--13244400	13	2.1	13	100	0	54	44	25	7	22	1.79
13252403--13252447	11	4.1	11	80	11	56	73	0	2	24	0.95
13254462--13254491	5	6.0	5	100	0	60	0	80	0	20	0.72
13254464--13254497	15	2.3	15	89	0	50	5	79	0	14	0.91
13267778--13267935	82	1.9	82	82	7	196	42	10	12	34	1.77
13272825--13272868	24	1.9	24	90	9	74	36	0	2	61	1.09
13272970--13272995	9	2.9	9	100	0	52	57	7	0	34	1.27
13272938--13273147	68	3.1	68	95	1	370	46	8	4	40	1.54
13273036--13273063	9	3.1	9	100	0	56	57	10	0	32	1.33
13273136--13273177	16	2.6	16	92	0	66	42	7	2	47	1.43
13273151--13273212	23	2.7	23	82	2	72	48	1	1	48	1.21
13274242--13274287	22	2.1	22	83	0	56	10	15	0	73	1.08
13274234--13274303	28	2.5	28	75	15	72	8	18	0	72	1.09
13280919--13281029	21	5.3	21	68	4	80	14	25	15	45	1.84
13280891--13281044	84	1.8	84	85	0	218	16	23	15	44	1.85
13281012--13281071	21	2.9	21	76	0	66	20	25	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13280891--13281043	42	3.6	42	83	0	180	16	22	15	45	1.85
13288096--13288283	42	4.5	42	76	9	150	17	20	15	46	1.84
13290480--13290531	27	1.9	27	88	0	77	13	25	21	40	1.89
13290481--13290543	27	2.3	27	83	0	72	14	25	23	36	1.93
13290641--13290727	45	1.9	45	85	0	120	25	21	12	40	1.89
13293128--13293157	14	2.1	14	93	0	51	53	0	0	46	1.00
13294665--13294722	28	2.1	28	100	0	116	20	10	12	56	1.64
13300037--13300078	21	2.0	21	85	0	57	35	0	26	38	1.57
13301223--13301257	15	2.4	15	90	4	54	48	0	8	42	1.33
13302793--13302827	18	1.9	18	94	0	61	54	2	5	37	1.39
13303042--13303123	36	2.2	37	81	12	98	53	2	8	35	1.45
13303256--13303308	3	17.3	3	76	3	52	58	1	9	30	1.40
13309877--13309941	4	15.5	4	77	17	62	21	4	0	73	1.00
13310956--13311022	23	2.8	23	74	20	66	73	4	2	19	1.14
13310973--13311019	19	2.5	20	82	6	53	76	4	2	17	1.04
13310973--13311019	20	2.5	20	82	6	53	76	4	2	17	1.04
13312605--13312666	22	2.7	22	87	5	79	46	1	1	50	1.20
13312640--13312692	16	3.3	16	91	0	88	45	3	5	45	1.45
13312742--13313018	93	3.0	93	98	0	536	40	4	7	48	1.51
13312820--13312960	33	4.5	33	66	16	109	39	4	7	48	1.50
13313060--13313085	10	2.6	10	100	0	52	50	11	0	38	1.39
13315419--13315624	43	4.8	43	82	4	245	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13315419--13315624	86	2.4	86	89	0	295	25	28	17	28	1.98
13317731--13317923	9	22.8	9	74	12	176	31	1	21	45	1.59
13317736--13317766	16	1.9	16	93	0	53	29	3	16	51	1.59
13317722--13317923	25	8.0	25	83	3	178	32	0	21	45	1.58
13317691--13317919	34	6.7	35	71	14	126	32	1	20	45	1.60
13317731--13317923	34	5.5	34	71	17	151	31	1	21	45	1.59
13318163--13318239	21	3.5	21	73	16	75	33	2	12	50	1.55
13318025--13318218	64	3.1	63	81	7	245	36	2	12	48	1.54
13318138--13318259	45	2.7	45	87	7	158	31	2	16	49	1.59
13318184--13318261	16	5.1	16	72	17	67	32	1	16	50	1.54
13318286--13318561	9	30.6	9	67	15	115	34	3	16	45	1.66
13318319--13318479	64	2.5	64	84	4	200	34	3	15	46	1.64
13318267--13318567	146	2.1	146	91	1	487	34	4	15	45	1.66
13318404--13318561	82	1.9	82	90	2	255	34	3	17	44	1.64
13318286--13318566	18	17.1	18	66	24	142	34	3	16	45	1.65
13318510--13318566	16	3.3	18	83	11	66	36	3	15	43	1.64
13322829--13323087	110	2.5	102	91	5	401	42	15	5	37	1.69
13325098--13325143	14	3.2	14	77	17	58	15	8	54	21	1.68
13325266--13325309	22	2.0	22	86	8	63	54	4	0	40	1.21
13327366--13327545	67	2.7	67	78	10	181	25	22	17	34	1.96
13336609--13336794	90	2.1	91	97	2	358	18	20	23	38	1.94
13340807--13340894	39	2.2	39	86	6	115	11	2	21	64	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13342811--13342938	61	2.1	60	85	4	168	34	16	17	32	1.92
13343631--13343656	3	8.7	3	100	0	52	34	0	0	65	0.93
13346420--13346457	20	2.0	20	89	5	60	52	7	0	39	1.31
13346456--13346498	20	2.2	20	86	0	59	53	2	0	44	1.13
13347026--13347074	25	2.0	25	83	0	62	26	22	14	36	1.92
13352434--13352472	18	2.0	20	85	9	55	56	5	0	38	1.22
13356792--13356842	24	2.2	24	77	22	56	33	0	5	60	1.21
13358374--13358437	33	2.0	30	82	8	74	48	3	4	43	1.39
13360018--13360055	15	2.5	15	83	16	51	42	0	0	57	0.98
13365515--13365566	18	3.1	17	81	10	70	50	13	9	26	1.72
13366423--13366499	41	1.9	40	89	7	120	23	18	31	27	1.97
13368619--13368881	134	2.0	131	96	2	481	35	19	17	28	1.94
13373178--13373224	21	2.2	22	92	3	78	21	38	19	21	1.94
13378481--13378520	20	2.0	21	90	5	64	30	17	12	40	1.86
13379321--13379384	23	2.8	23	73	13	60	37	10	4	46	1.60
13380140--13380233	46	2.0	46	100	0	188	35	8	8	47	1.64
13382951--13382996	20	2.3	21	81	11	60	65	2	2	30	1.16
13383481--13383532	18	2.9	17	75	13	52	40	0	1	57	1.10
13384077--13384115	19	2.1	19	85	0	51	33	20	2	43	1.65
13385021--13385051	9	3.4	9	90	0	53	38	22	12	25	1.90
13390472--13390518	24	2.0	24	91	0	76	38	4	14	42	1.66
13390531--13390640	55	2.0	55	90	0	175	34	10	11	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13390811--13390886	30	2.5	30	79	12	84	26	9	6	57	1.54
13394428--13394492	30	2.2	30	94	0	112	24	3	13	58	1.50
13398353--13398397	23	2.0	23	86	4	65	24	8	2	64	1.34
13399138--13399281	73	2.0	73	94	0	252	34	17	20	28	1.95
13399994--13400060	21	3.3	21	75	12	86	53	4	5	35	1.46
13400015--13400097	18	4.3	19	77	13	80	57	4	3	33	1.37
13399994--13400078	39	2.2	39	100	0	170	55	4	4	35	1.42
13400015--13400097	21	4.1	21	71	20	70	57	4	3	33	1.37
13402479--13402510	16	1.9	17	93	6	57	37	21	0	40	1.54
13402671--13402841	43	4.0	42	77	13	170	33	28	16	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189