genome.fa.s20.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  53  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15209372--15209403	12	2.6	13	85	14	50	0	50	3	46	1.17
15214513--15214563	18	2.8	20	71	17	56	31	7	0	60	1.25
15216823--15216860	6	6.3	6	88	11	60	0	50	2	47	1.15
15220581--15220606	3	8.7	3	100	0	52	69	0	0	30	0.89
15224100--15224275	87	2.0	87	85	0	235	33	14	25	26	1.95
15229991--15230040	26	2.0	24	84	7	64	36	8	0	56	1.29
15230025--15230073	18	2.7	18	81	6	55	34	4	0	61	1.15
15230371--15230582	107	2.0	107	93	0	361	29	19	19	32	1.96
15233322--15233366	20	2.4	19	85	10	58	44	4	6	44	1.50
15233278--15233406	69	1.9	69	86	1	188	40	3	6	48	1.48
15234350--15234394	23	2.0	22	95	4	81	40	28	13	17	1.88
15237868--15238449	290	2.0	290	96	0	1065	30	13	17	38	1.88
15238991--15239021	15	2.1	15	93	0	53	29	3	6	61	1.37
15245448--15245517	29	2.3	30	87	4	97	32	7	15	44	1.74
15245469--15245528	29	2.1	29	87	0	84	30	5	15	50	1.65
15245672--15245760	31	3.0	29	77	9	81	41	11	7	39	1.70
15247196--15247268	36	2.0	36	100	0	146	24	34	5	35	1.79
15247636--15247695	31	1.9	31	89	0	93	33	10	21	35	1.87
15250957--15251065	49	2.2	49	85	3	139	26	26	13	33	1.94
15250981--15251090	49	2.3	49	78	7	109	27	24	14	33	1.94
15252689--15252714	3	8.7	3	100	0	52	34	0	0	65	0.93
15257026--15257076	25	2.1	24	79	20	61	43	5	11	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15260035--15260660	81	7.7	79	77	8	523	34	15	23	26	1.95
15260042--15260792	162	4.8	157	78	9	667	34	16	22	26	1.95
15260035--15260580	243	2.2	243	93	0	923	34	15	22	26	1.95
15260035--15260792	243	3.2	240	84	7	881	34	16	22	26	1.95
15260597--15260726	66	2.0	66	87	3	190	33	16	21	29	1.95
15260516--15260792	147	1.9	147	86	3	396	35	16	22	25	1.95
15261987--15262049	6	10.5	6	100	0	126	66	0	0	33	0.92
15267565--15267597	17	1.9	18	88	11	52	48	0	9	42	1.35
15279034--15279239	101	2.0	102	99	0	405	35	5	30	28	1.81
15279915--15279960	20	2.3	20	85	7	58	26	0	2	71	0.97
15280289--15280321	17	1.9	17	93	0	57	57	3	3	36	1.29
15282243--15282457	50	4.2	51	81	9	192	26	21	30	21	1.99
15282266--15282510	50	4.8	50	85	6	309	26	22	29	21	1.99
15282270--15282510	98	2.4	101	85	7	312	26	23	29	21	1.99
15289717--15289965	50	4.8	50	88	3	318	26	22	29	21	1.99
15292777--15292833	11	5.4	11	72	8	55	45	8	10	35	1.70
15294023--15294123	44	2.3	44	85	0	148	58	4	7	28	1.47
15294030--15294142	44	2.6	44	84	2	111	57	5	7	30	1.48
15295909--15295937	12	2.4	12	100	0	58	17	20	13	48	1.81
15302138--15302244	50	2.1	50	100	0	214	24	3	27	44	1.70
15306989--15307046	20	2.8	21	75	12	66	55	5	1	37	1.33
15308384--15308451	22	3.3	22	67	23	65	30	4	13	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15309689--15310008	41	7.8	40	76	5	216	15	24	23	35	1.94
15309689--15310008	82	3.9	82	83	5	353	15	24	23	35	1.94
15309688--15309909	123	1.8	123	84	0	309	14	25	24	36	1.93
15309688--15309966	123	2.3	123	79	3	285	16	24	23	35	1.95
15310482--15310519	15	2.5	15	86	0	58	21	0	42	36	1.53
15310455--15310522	15	4.9	14	74	13	52	23	0	35	41	1.55
15311939--15311979	18	2.3	18	87	4	57	24	0	43	31	1.54
15312372--15312423	27	1.9	27	84	0	68	42	0	9	48	1.36
15315237--15315289	21	2.5	21	84	9	72	39	1	1	56	1.21
15315374--15315414	13	2.8	15	85	14	59	46	19	0	34	1.50
15315466--15315782	25	12.4	25	73	14	188	46	19	2	31	1.63
15315486--15315839	9	41.3	9	72	15	261	44	19	2	33	1.65
15315486--15315596	43	2.6	41	84	8	141	48	20	0	30	1.50
15315486--15315584	52	1.9	52	91	0	162	47	22	0	30	1.51
15315566--15315780	59	3.6	59	94	1	367	45	18	3	33	1.65
15315748--15315812	25	2.6	25	85	4	78	43	20	4	32	1.72
15315529--15315812	118	2.4	119	82	8	389	44	19	3	32	1.66
15315553--15315812	59	4.4	59	90	3	335	44	18	3	33	1.67
15322292--15322330	16	2.4	16	91	0	60	48	2	12	35	1.55
15322268--15322332	34	1.9	34	83	0	85	46	4	15	33	1.66
15322453--15322499	14	3.4	14	81	0	58	51	2	6	40	1.39
15322510--15322535	13	2.0	13	100	0	52	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15323420--15323474	22	2.5	22	85	2	67	83	3	7	5	0.89
15324297--15324819	44	12.0	44	72	7	163	27	21	19	30	1.98
15324315--15325042	218	3.3	218	95	0	1287	27	21	20	30	1.98
15324400--15325031	87	7.3	87	71	10	236	27	21	20	31	1.98
15326261--15326307	7	7.0	7	83	9	62	14	14	0	70	1.18
15326261--15326307	13	3.5	14	82	8	62	14	14	0	70	1.18
15326261--15326307	20	2.3	20	92	0	76	14	14	0	70	1.18
15327082--15327214	61	2.2	60	80	9	146	9	14	4	71	1.28
15328311--15328337	12	2.2	12	100	0	54	37	0	40	22	1.54
15331002--15331040	16	2.4	16	82	0	51	48	2	12	35	1.55
15331258--15331283	13	2.0	13	100	0	52	61	7	0	30	1.24
15331394--15331446	20	2.7	19	72	11	54	52	1	5	39	1.36
15333062--15333537	43	11.1	43	84	2	562	23	20	25	30	1.99
15333057--15333560	257	2.0	257	80	3	566	24	20	25	29	1.99
15333205--15333604	129	3.1	129	80	4	290	25	21	24	28	1.99
15336525--15336576	25	2.1	25	100	0	104	21	17	11	50	1.77
15338970--15338999	5	6.0	5	100	0	60	80	0	0	20	0.72
15339543--15339912	125	3.0	124	80	8	382	30	16	22	31	1.95
15341419--15341565	25	6.1	25	79	13	164	45	14	0	40	1.45
15341997--15342036	18	2.2	18	90	0	62	40	5	30	25	1.77
15342687--15342712	7	3.7	7	100	0	52	57	15	0	26	1.38
15342882--15342919	20	1.9	20	84	10	51	55	7	2	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15343944--15344020	11	6.9	11	75	16	54	44	1	27	27	1.62
15343944--15344020	22	3.5	22	78	16	70	44	1	27	27	1.62
15343944--15344019	34	2.3	34	80	17	88	43	1	27	27	1.63
15344549--15344608	23	2.7	22	84	7	68	68	0	15	16	1.22
15345790--15346056	94	2.8	93	84	0	327	30	17	19	32	1.95
15345790--15346094	94	3.3	93	82	2	326	29	16	20	33	1.95
15345979--15346326	140	2.5	138	80	4	387	28	16	19	34	1.94
15346112--15346554	44	9.7	43	66	16	149	28	19	17	34	1.95
15345963--15346380	138	3.0	138	77	4	405	28	18	18	34	1.95
15346250--15346449	94	2.1	94	90	0	310	26	22	16	34	1.95
15346250--15346495	94	2.6	94	85	3	237	27	21	16	34	1.95
15346100--15346597	232	2.2	232	82	6	591	29	20	16	33	1.95
15346344--15346597	138	1.8	138	79	3	296	28	20	16	33	1.95
15350932--15350982	25	2.0	26	88	3	77	25	7	15	50	1.71
15350897--15351008	56	2.0	55	81	5	127	29	7	15	48	1.71
15350987--15351359	61	6.1	61	78	10	325	31	8	17	42	1.79
15351031--15351334	31	9.9	31	76	10	268	31	7	17	43	1.77
15350956--15351334	92	4.1	92	88	3	507	31	7	17	43	1.78
15351001--15351359	31	11.7	30	78	8	217	31	7	18	42	1.78
15355911--15356783	114	7.7	113	87	1	1149	34	20	20	24	1.97
15355911--15356783	342	2.6	340	88	1	1282	34	20	20	24	1.97
15357449--15357492	21	2.1	21	83	8	54	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15358089--15358437	191	1.8	191	90	0	563	19	24	14	41	1.88
15360315--15360347	13	2.5	13	95	0	57	36	9	6	48	1.60
15360343--15360381	16	2.5	15	88	8	60	41	0	5	53	1.23
15360440--15360786	9	37.9	9	75	7	270	48	15	3	32	1.62
15360444--15360735	92	3.3	89	78	12	287	48	15	3	32	1.63
15360444--15360786	147	2.3	147	93	2	582	48	15	3	32	1.62
15363459--15363529	21	3.4	21	86	0	97	30	18	47	2	1.63
15363852--15364021	42	4.0	42	89	2	252	36	21	21	21	1.95
15365119--15365163	14	3.2	15	79	20	53	0	26	11	62	1.29
15375132--15375264	65	2.0	65	81	2	151	6	31	14	47	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189