genome.fa.s20.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  109  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30539506--30539538	17	2.0	17	88	5	50	75	0	21	3	0.93
30545248--30545306	22	2.7	22	76	10	66	37	18	6	37	1.78
30545286--30545324	5	7.4	5	83	11	51	35	17	0	46	1.49
30545280--30545398	22	5.4	22	69	13	66	31	19	5	43	1.74
30545248--30545357	49	2.2	49	80	6	116	31	18	8	41	1.79
30545294--30545398	44	2.4	44	77	3	104	29	20	6	43	1.77
30545348--30545393	12	4.0	12	75	11	51	32	21	4	41	1.73
30548351--30548395	19	2.3	20	88	3	65	28	6	17	46	1.73
30556270--30556918	179	3.6	179	89	0	974	28	17	21	32	1.96
30556573--30556918	44	7.8	43	66	16	136	27	17	22	32	1.97
30556923--30557396	143	3.3	143	88	0	662	28	21	18	30	1.97
30562942--30562984	20	2.0	20	86	8	59	25	11	44	18	1.84
30563526--30563566	20	2.0	20	85	4	55	65	4	0	29	1.13
30563545--30563621	40	1.9	40	84	10	104	64	0	1	33	1.01
30565702--30566023	109	3.0	108	89	1	477	35	16	16	31	1.92
30566078--30566108	15	2.1	15	93	0	53	64	6	9	19	1.45
30566151--30566182	4	7.8	4	96	3	55	75	3	0	21	0.95
30566385--30566472	39	2.3	38	80	7	106	51	7	6	34	1.58
30568173--30568829	132	5.0	130	83	5	562	27	22	18	30	1.97
30568490--30568674	44	4.2	44	63	10	117	28	21	20	30	1.98
30568330--30568875	132	4.1	131	89	1	781	27	23	19	29	1.98
30568974--30569735	46	16.7	46	85	3	864	30	25	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30568853--30569735	92	9.7	92	80	5	848	28	25	18	26	1.98
30569082--30569735	272	2.4	277	82	6	833	31	25	16	26	1.97
30570974--30571028	6	9.0	6	84	4	74	0	23	0	76	0.79
30573917--30574456	109	5.0	109	92	0	852	35	17	15	31	1.91
30574511--30574541	15	2.1	15	93	0	53	64	6	9	19	1.45
30574584--30574615	4	7.8	4	96	3	55	75	3	0	21	0.95
30578835--30578871	12	3.1	12	88	0	56	24	0	43	32	1.55
30578834--30578869	18	2.0	18	88	0	54	22	0	44	33	1.53
30585659--30585725	33	2.0	33	100	0	134	11	55	5	26	1.59
30590851--30590877	11	2.5	11	100	0	54	22	7	18	51	1.70
30592276--30592469	92	2.1	92	88	5	286	44	4	4	46	1.41
30592447--30592545	52	2.0	52	80	11	118	45	6	2	46	1.39
30592502--30592535	17	2.0	17	94	0	59	44	5	0	50	1.26
30592507--30592554	17	3.0	16	79	17	55	45	6	2	45	1.40
30592595--30592629	18	2.0	17	88	5	52	40	0	0	60	0.97
30592542--30592775	129	1.8	130	95	0	425	42	2	5	49	1.39
30592724--30592758	18	2.0	17	88	5	52	45	0	0	54	0.99
30592712--30592983	144	1.9	147	94	3	487	47	2	3	46	1.34
30592868--30592902	18	2.0	17	88	5	52	45	0	0	54	0.99
30593064--30593158	45	2.1	45	88	1	138	32	27	5	34	1.79
30593139--30593206	16	4.2	16	96	0	118	35	36	0	27	1.58
30593278--30593322	17	2.6	18	79	10	58	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30599555--30599632	20	4.0	19	80	9	86	34	8	11	44	1.72
30599555--30599635	40	2.0	40	86	6	112	34	8	11	45	1.70
30599975--30599999	11	2.3	11	100	0	50	56	16	0	28	1.41
30602735--30602774	20	2.0	21	85	14	57	32	10	17	40	1.83
30605818--30605894	20	3.9	21	74	8	63	29	5	15	49	1.66
30607314--30607627	157	2.0	157	99	0	619	26	11	26	35	1.90
30608795--30609778	493	2.0	493	94	0	1725	27	17	23	30	1.97
30613393--30613431	17	2.2	18	86	4	53	61	0	12	25	1.31
30614048--30614109	29	2.2	28	85	2	79	24	11	17	46	1.81
30614335--30614449	51	2.3	51	95	0	203	26	30	0	42	1.56
30616240--30616274	18	1.9	18	88	0	52	25	34	8	31	1.86
30616688--30616746	26	2.3	26	88	2	84	50	1	8	38	1.43
30616749--30616831	29	2.9	28	82	7	103	39	26	1	32	1.64
30616742--30617029	76	3.8	75	81	9	359	44	25	0	29	1.57
30616778--30617107	47	6.8	47	89	7	507	44	26	0	28	1.57
30616807--30617094	18	18.3	18	61	26	102	45	25	0	28	1.56
30616872--30616982	29	3.8	29	93	0	186	44	27	0	27	1.55
30616762--30617077	152	2.1	152	94	3	564	45	26	0	28	1.57
30616825--30617076	76	3.3	76	80	10	343	45	26	0	28	1.54
30617102--30617338	55	4.3	55	88	5	361	37	10	5	46	1.62
30617208--30617294	18	4.7	18	69	10	68	35	5	4	54	1.45
30617102--30617338	111	2.1	110	89	3	361	37	10	5	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30617322--30617346	10	2.5	10	100	0	50	44	8	0	48	1.32
30620397--30620747	124	2.8	125	91	1	571	32	21	15	30	1.95
30624390--30624477	23	3.8	23	80	7	81	40	20	9	29	1.83
30628136--30628162	6	4.5	6	100	0	54	14	0	0	85	0.61
30635200--30635251	18	2.9	18	79	0	68	38	17	1	42	1.60
30653315--30653359	21	2.1	21	91	0	72	8	20	2	68	1.27
30653321--30653362	21	2.0	22	95	4	77	9	19	0	71	1.13
30653321--30653380	21	3.0	20	83	14	61	8	20	0	71	1.11
30655677--30655723	25	1.9	24	86	4	67	51	10	19	19	1.75
30672821--30672886	3	21.3	3	76	17	64	27	3	3	66	1.21
30672826--30672884	31	1.9	31	86	6	84	27	3	3	66	1.24
30673213--30673256	24	1.9	22	86	9	61	20	6	4	68	1.31
30673414--30673720	110	2.8	108	89	3	458	29	17	18	34	1.94
30676388--30676413	10	2.6	10	100	0	52	80	0	7	11	0.89
30677129--30677158	8	3.6	8	91	8	51	33	0	0	66	0.92
30677128--30677157	9	3.4	9	90	9	53	30	0	0	70	0.88
30677241--30677349	10	11.0	10	71	17	59	30	2	1	65	1.17
30677268--30677351	19	4.4	19	70	14	64	27	1	1	70	1.02
30677241--30677350	29	3.8	28	70	12	78	30	2	1	64	1.18
30677533--30677573	21	2.0	21	85	9	57	24	4	7	63	1.40
30681809--30681862	24	2.2	24	87	9	83	40	0	0	59	0.98
30681824--30681879	24	2.3	24	84	6	69	39	1	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30684669--30684712	22	2.0	22	100	0	88	36	4	4	54	1.41
30685346--30685412	31	2.2	31	91	2	109	41	7	14	35	1.75
30691625--30691671	5	9.4	5	81	9	60	61	0	2	36	1.08
30692000--30692049	25	2.0	26	92	4	84	74	2	24	0	0.93
30692409--30692608	109	1.8	109	96	0	373	36	9	6	48	1.60
30697300--30697375	33	2.3	32	75	2	80	35	21	23	19	1.96
30697790--30697842	27	2.0	27	81	7	63	33	18	22	24	1.97
30697930--30697986	24	2.4	24	90	0	87	42	22	7	28	1.80
30698003--30698118	27	4.4	27	75	2	110	20	18	22	37	1.94
30713429--30713498	30	2.3	30	100	0	140	20	25	41	12	1.88
30714347--30714421	27	2.9	27	78	4	73	40	18	2	38	1.65
30714348--30714421	13	5.6	13	79	3	67	39	18	2	39	1.65
30714385--30714430	13	3.5	13	87	3	65	34	23	4	36	1.75
30722170--30722214	15	3.0	15	100	0	90	20	26	13	40	1.89
30725828--30725866	12	3.2	12	85	0	51	20	23	5	51	1.67
30726115--30726307	50	3.7	50	83	6	226	23	29	21	25	1.99
30726115--30726301	100	1.8	103	83	6	254	22	30	20	25	1.99
30730394--30730535	20	7.1	20	60	9	56	31	17	30	20	1.96
30730379--30730535	40	3.9	40	88	0	224	32	17	29	20	1.96
30741037--30741066	15	2.0	15	100	0	60	40	26	0	33	1.57
30744828--30745109	40	7.1	38	77	8	120	31	18	27	21	1.97
30744843--30745109	79	3.4	79	79	7	265	31	18	28	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30744876--30745107	119	1.9	118	82	5	288	30	18	28	21	1.97
30749727--30749767	21	1.9	22	90	5	66	70	2	4	21	1.18
30751907--30751982	35	2.2	35	82	15	97	30	9	19	40	1.83
30755742--30755766	11	2.3	11	100	0	50	44	0	16	40	1.47
30758590--30758767	23	7.7	22	71	14	83	21	3	32	42	1.71
30758620--30758777	23	6.9	22	73	7	84	21	5	33	39	1.75
30765681--30765706	7	3.7	7	100	0	52	11	0	0	88	0.52
30766381--30766438	21	2.8	21	81	0	80	15	29	29	25	1.96
30770163--30770322	71	2.2	71	89	1	239	36	31	9	23	1.86
30773496--30773593	42	2.3	42	91	3	153	24	26	11	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189