genome.fa.s20.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  30  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9453877--9454529	135	4.9	134	78	5	474	28	23	17	31	1.97
9455512--9455537	13	2.0	13	100	0	52	38	15	15	30	1.88
9470799--9470840	9	4.7	9	87	0	66	35	26	14	23	1.93
9470799--9470848	18	2.8	18	87	0	73	36	24	14	26	1.93
9470951--9470994	18	2.4	18	92	0	70	15	2	40	40	1.60
9478912--9478999	39	2.2	39	81	2	104	36	5	20	37	1.76
9479201--9479350	45	3.3	45	88	1	212	20	18	19	41	1.91
9479330--9479371	18	2.3	19	88	12	61	19	21	16	42	1.89
9481415--9481576	40	4.1	40	88	0	229	39	25	17	17	1.91
9481415--9481568	79	1.9	79	88	2	229	38	25	16	18	1.92
9489724--9489776	21	2.7	19	75	13	54	26	0	3	69	1.05
9501189--9501248	30	2.0	31	83	3	77	40	0	41	18	1.50
9510439--9510471	16	2.0	17	94	5	59	66	0	15	18	1.25
9511712--9512582	128	6.8	128	91	0	1350	33	19	21	24	1.97
9512574--9512914	44	7.8	44	68	9	135	28	17	24	29	1.97
9512556--9513350	217	3.7	215	88	3	1154	28	18	25	27	1.98
9512999--9513337	44	7.8	44	69	12	189	28	18	25	27	1.98
9514913--9514947	17	2.0	18	88	5	54	40	8	0	51	1.33
9517100--9517133	17	1.9	18	88	5	52	44	0	0	55	0.99
9524318--9524343	5	5.2	5	100	0	52	38	42	0	19	1.51
9525290--9525360	29	2.4	29	88	4	99	47	15	11	25	1.78
9525804--9525840	18	2.1	18	89	0	56	40	2	2	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9526134--9526253	40	3.0	40	83	2	150	29	26	22	21	1.99
9526380--9526670	98	3.0	97	86	6	394	41	2	16	40	1.60
9527468--9527552	40	2.1	41	88	2	127	21	21	24	32	1.97
9532704--9532761	10	5.6	11	74	13	52	31	0	3	65	1.09
9535390--9535428	20	2.0	20	89	0	60	28	12	25	33	1.93
9547296--9547346	22	2.3	21	83	10	57	68	1	5	23	1.22
9549182--9549429	89	2.8	88	84	2	295	30	19	17	32	1.95
9549094--9549428	44	7.5	45	76	9	249	30	19	17	33	1.95
9555716--9555782	34	1.9	35	87	3	100	31	8	14	44	1.76
9556771--9556818	20	2.4	20	89	0	78	8	25	33	33	1.86
9560785--9560818	12	2.8	12	100	0	68	41	17	5	35	1.74
9560799--9560856	29	2.0	29	100	0	116	27	24	6	41	1.80
9561260--9561375	48	2.4	48	80	9	128	34	22	25	18	1.96
9561290--9561481	24	7.9	24	68	15	92	34	21	26	17	1.96
9561291--9561469	72	2.4	72	78	3	180	34	21	26	17	1.96
9564153--9564299	33	4.4	32	67	12	98	27	22	16	34	1.95
9564127--9564372	101	2.4	101	91	0	393	27	23	15	32	1.95
9566320--9566372	19	2.7	19	78	18	56	41	5	20	32	1.76
9568132--9568177	21	2.2	21	96	0	83	23	19	23	32	1.97
9572919--9573108	89	2.2	83	80	12	199	39	17	11	31	1.86
9573236--9573327	38	2.4	39	81	5	107	53	0	2	44	1.12
9573236--9573346	19	5.7	19	76	8	89	55	0	1	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9573663--9573697	18	1.9	18	88	0	52	17	2	0	80	0.84
9584544--9584637	47	2.0	47	100	0	188	38	21	12	27	1.90
9598804--9598828	4	6.2	4	100	0	50	52	24	0	24	1.48
9598770--9599217	226	2.0	222	93	4	758	42	18	13	25	1.87
9605712--9605857	26	6.0	24	72	10	91	34	18	26	21	1.96
9606334--9606365	5	6.2	5	92	7	55	40	18	0	40	1.51
9617463--9617504	21	2.0	21	85	0	57	28	7	45	19	1.76
9617440--9617510	27	2.6	27	79	0	79	28	4	47	19	1.68
9617560--9617585	4	6.5	4	100	0	52	26	0	23	50	1.50
9623381--9623415	18	2.0	18	88	5	54	17	5	20	57	1.60
9633186--9633251	21	3.1	21	82	0	87	43	18	22	15	1.87
9633178--9633306	42	3.1	42	83	0	150	44	18	18	18	1.87
9633217--9633337	21	5.8	21	75	1	109	44	19	14	21	1.86
9642358--9642401	21	2.1	21	87	8	63	18	15	0	65	1.27
9651426--9651473	22	2.2	21	82	13	62	27	8	0	64	1.22
9656096--9656205	3	34.7	3	77	15	89	30	5	2	60	1.33
9673090--9673114	7	3.6	7	100	0	50	88	0	12	0	0.53
9673097--9673173	30	2.6	28	80	11	91	71	7	10	10	1.31
9674804--9674940	43	3.2	43	62	17	102	28	25	21	24	1.99
9674750--9675012	87	3.0	87	92	0	427	29	22	23	23	1.99
9675292--9675328	9	4.1	9	92	0	65	45	13	10	29	1.77
9676846--9676870	12	2.1	12	100	0	50	92	8	0	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9679208--9679233	2	13.0	2	100	0	52	50	0	0	50	1.00
9688732--9688756	2	12.5	2	100	0	50	52	0	48	0	1.00
9692739--9692779	20	2.0	20	85	4	55	39	4	2	53	1.35
9694544--9694574	16	2.0	16	93	6	55	58	9	0	32	1.31
9695402--9695445	10	4.1	10	85	11	52	84	4	9	2	0.85
9696094--9696641	50	11.0	50	68	4	361	25	22	20	31	1.98
9696105--9696641	100	5.4	100	93	0	869	25	22	20	31	1.98
9700286--9700329	10	4.1	10	85	11	52	84	4	9	2	0.85
9708327--9708369	21	2.0	21	82	8	52	37	11	4	46	1.61
9709523--9709555	16	2.0	17	88	5	50	42	0	9	48	1.35
9713110--9713145	17	2.1	17	90	10	56	52	2	0	44	1.15
9715288--9715352	25	2.6	25	88	7	89	24	27	15	32	1.95
9723520--9723603	5	16.8	5	75	4	62	53	16	23	5	1.65
9723571--9723623	15	3.5	15	76	0	52	56	16	20	5	1.60
9736799--9736830	6	5.3	6	100	0	64	34	0	50	15	1.45
9736799--9736837	18	2.2	18	85	0	51	33	2	46	17	1.62
9738855--9738943	25	3.1	30	82	12	107	42	6	23	26	1.79
9743516--9743601	30	3.0	29	85	12	117	43	6	24	25	1.79
9743514--9743602	25	3.1	30	85	12	125	41	6	25	25	1.80
9747856--9748324	229	2.0	229	97	0	886	29	16	16	37	1.91
9752448--9752555	56	1.9	56	94	0	189	22	36	3	37	1.72
9757105--9757131	9	3.0	9	100	0	54	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9757105--9757146	20	2.2	18	84	16	50	33	30	2	33	1.71
9762204--9762327	66	1.9	65	81	6	151	12	26	16	43	1.85
9766057--9766124	21	3.3	21	62	4	57	42	16	4	36	1.68
9766059--9766143	41	2.1	41	100	0	170	40	17	4	37	1.71
9772237--9772399	43	3.8	43	80	4	177	21	18	26	33	1.96
9782221--9782384	43	3.8	43	81	10	201	23	18	27	30	1.98
9786568--9786600	15	2.1	16	94	5	59	63	0	0	36	0.95
9787165--9787202	6	6.5	6	84	3	51	0	47	34	18	1.49
9788008--9788859	44	19.9	43	68	10	165	25	20	21	31	1.98
9788051--9789080	128	8.0	128	91	0	1603	25	20	21	32	1.98
9788051--9789080	257	4.0	256	90	0	1603	25	20	21	32	1.98
9788055--9789080	385	2.7	384	92	0	1678	25	20	22	32	1.98
9789328--9789385	24	2.4	24	91	0	98	27	24	13	34	1.93
9790335--9790384	20	2.5	20	84	12	68	6	14	0	80	0.90
9790326--9790375	25	2.0	25	92	3	84	4	20	0	76	0.95
9792054--9792097	23	1.9	22	82	17	54	38	25	0	36	1.56
9792197--9792310	23	5.0	23	86	0	156	35	21	21	21	1.96
9792197--9792314	46	2.6	46	93	0	191	34	22	21	21	1.97
9794952--9795077	49	2.6	47	83	5	155	30	25	15	27	1.96
9796863--9796927	32	2.1	32	97	2	123	30	9	12	47	1.72
9800685--9800749	32	2.1	32	97	2	123	30	9	12	47	1.72
9801289--9801364	16	4.9	16	74	6	77	84	7	7	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9801289--9801364	25	3.2	24	80	10	93	84	7	7	0	0.79
9801290--9801379	31	3.0	31	79	10	55	81	8	10	0	0.89
9804494--9804557	32	2.0	32	96	3	121	31	9	12	46	1.73
9805098--9805198	9	11.2	9	73	7	55	80	9	8	0	0.96
9805098--9805182	19	4.8	18	72	19	65	82	9	7	1	0.90
9805125--9805198	34	2.1	34	87	7	105	78	10	9	1	1.03
9805114--9805193	20	4.4	18	71	27	62	77	12	8	1	1.05
9808314--9808378	32	2.1	32	94	2	114	29	9	12	49	1.71
9808681--9808711	4	8.0	4	92	7	55	25	0	0	74	0.82
9809291--9809362	37	1.9	37	86	10	103	31	19	1	47	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189