genome.fa.s20.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  124  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35271167--35271205	21	2.0	20	90	10	62	20	7	15	56	1.63
35271718--35271788	32	2.2	33	82	7	83	52	16	4	26	1.63
35271779--35271828	19	2.7	18	80	17	57	46	14	10	30	1.77
35273067--35273105	19	2.1	19	90	0	60	0	48	10	41	1.37
35276229--35276283	24	2.2	26	81	12	71	45	0	1	52	1.11
35276495--35276546	16	3.2	16	94	0	86	34	36	0	28	1.58
35277854--35277903	16	3.1	16	79	0	55	16	10	6	68	1.38
35290889--35290965	36	2.1	36	92	4	129	61	2	24	11	1.43
35292434--35292558	66	1.9	66	83	3	162	26	24	20	29	1.99
35312934--35313014	40	2.0	40	100	0	162	29	27	12	30	1.93
35316545--35316571	5	5.4	5	100	0	54	0	0	18	81	0.69
35323303--35323439	68	2.0	68	94	2	240	42	13	21	22	1.88
35325213--35325245	17	2.0	17	88	5	50	15	0	21	63	1.30
35327696--35327774	39	2.0	39	92	0	131	48	12	11	27	1.76
35331015--35331093	39	2.0	39	92	0	131	45	13	11	29	1.79
35338644--35338683	21	2.0	21	90	9	66	67	0	0	32	0.91
35338867--35338937	9	7.7	9	74	12	63	35	2	39	22	1.69
35339464--35339524	20	3.1	19	83	9	61	68	4	1	24	1.18
35345501--35345529	13	2.1	14	93	6	51	58	27	0	13	1.36
35350069--35350157	27	3.3	26	78	10	90	34	10	24	30	1.88
35350079--35350170	27	3.4	27	80	8	89	28	11	26	33	1.92
35350265--35350315	26	2.0	26	84	7	68	37	5	23	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35361697--35361970	29	9.4	29	76	3	217	36	20	15	27	1.93
35373003--35373060	29	2.0	30	93	3	100	36	17	22	24	1.95
35373002--35373072	30	2.4	30	85	4	99	38	15	23	22	1.93
35377063--35377201	75	1.9	75	84	0	188	25	27	21	25	1.99
35378011--35378062	21	2.5	21	87	0	77	26	7	34	30	1.85
35391374--35391465	29	3.2	29	72	7	80	21	14	25	39	1.91
35396423--35396460	19	2.0	19	94	0	67	31	28	5	34	1.80
35396444--35396468	13	1.9	13	100	0	50	32	24	8	36	1.84
35401852--35401896	3	15.0	3	100	0	90	33	0	0	66	0.92
35403183--35403239	10	5.2	11	75	14	55	22	31	0	45	1.53
35403200--35403255	22	2.5	22	91	2	85	30	28	0	41	1.57
35403211--35403324	51	2.2	52	89	4	178	32	23	0	43	1.54
35403227--35403330	51	2.0	51	96	0	190	29	25	0	44	1.55
35403482--35403537	26	2.2	26	78	12	62	33	0	5	60	1.19
35404475--35404499	7	3.6	7	100	0	50	28	0	12	60	1.32
35405151--35405185	18	1.9	18	94	0	61	25	31	8	34	1.86
35405608--35405694	44	2.0	45	88	6	133	39	0	11	49	1.39
35405720--35405787	30	2.3	30	86	0	100	52	23	0	23	1.47
35405700--35406900	146	8.4	141	75	18	801	46	24	1	28	1.60
35405780--35406938	95	12.1	96	80	14	702	45	24	1	28	1.62
35406274--35406384	56	2.0	57	92	1	188	45	28	0	24	1.59
35405755--35406901	362	3.2	354	82	11	1309	45	24	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35405755--35406906	23	48.5	23	76	17	958	45	24	1	28	1.61
35406891--35406933	23	2.0	21	90	9	68	41	30	2	25	1.68
35406929--35407152	116	1.9	116	91	0	367	38	8	9	43	1.67
35407128--35407169	17	2.4	18	80	4	50	42	9	2	45	1.49
35410127--35410480	126	2.8	126	88	2	550	33	21	15	29	1.94
35411956--35411981	6	4.3	6	100	0	52	0	15	34	50	1.45
35418081--35418156	32	2.4	32	84	0	89	25	23	5	46	1.73
35422593--35422668	32	2.4	32	84	0	89	25	23	5	46	1.73
35424776--35424813	20	1.9	20	89	10	60	44	15	5	34	1.69
35425495--35425547	20	2.7	20	77	8	63	33	15	32	18	1.92
35433242--35433313	38	1.9	37	97	2	135	70	1	18	9	1.21
35433230--35433284	26	2.0	28	86	6	78	69	1	18	10	1.27
35433256--35433350	43	2.2	43	83	1	111	69	2	20	8	1.25
35437100--35437163	21	3.2	21	70	14	55	23	31	7	37	1.83
35437093--35437171	39	2.0	39	81	13	92	26	30	10	32	1.89
35449254--35449856	47	12.6	47	94	2	972	29	28	8	33	1.86
35456784--35456903	56	2.1	56	96	0	222	44	9	24	22	1.82
35462440--35462664	40	5.7	40	85	5	287	24	21	28	25	1.99
35462440--35462697	119	2.2	119	81	6	283	25	21	27	25	1.99
35465721--35465763	20	2.2	20	91	8	70	2	25	0	72	0.97
35473717--35473755	18	2.1	19	90	4	62	41	0	10	48	1.37
35475693--35475784	48	1.9	48	93	0	157	41	19	17	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35475991--35476054	17	3.6	17	74	15	67	46	14	12	26	1.79
35476009--35476062	17	2.9	19	71	20	60	46	16	12	24	1.82
35475992--35476062	36	2.0	36	97	0	133	46	15	12	25	1.81
35481112--35481175	17	3.6	17	74	15	67	46	14	12	26	1.79
35481130--35481183	17	2.9	19	71	20	60	46	16	12	24	1.82
35481113--35481183	36	2.0	36	97	0	133	46	15	12	25	1.81
35501983--35502007	13	1.9	13	100	0	50	52	0	0	48	1.00
35507952--35507976	13	1.9	13	100	0	50	60	0	0	40	0.97
35511791--35511916	37	3.4	37	84	2	173	23	13	25	38	1.91
35516475--35516501	13	2.1	13	100	0	54	25	22	14	37	1.93
35517130--35517211	28	2.9	27	73	10	67	41	1	0	57	1.06
35517019--35517181	61	2.7	58	72	9	159	41	0	3	53	1.23
35517399--35517451	16	3.3	16	97	0	97	22	35	3	37	1.72
35520242--35520279	17	2.2	18	86	9	53	65	7	7	18	1.43
35526375--35526718	171	2.0	171	97	0	652	34	17	15	32	1.91
35533058--35533132	26	2.9	26	90	4	107	18	24	21	36	1.95
35541727--35541833	26	4.1	26	79	0	124	21	21	21	35	1.96
35551666--35552313	47	13.6	47	90	3	1003	33	8	29	29	1.86
35551666--35552313	96	6.8	96	92	2	1074	33	8	29	29	1.86
35559503--35559561	31	1.9	31	89	6	93	30	28	0	40	1.57
35574357--35574399	21	2.2	20	88	12	63	0	11	0	88	0.52
35574357--35574401	17	2.9	15	84	12	56	0	11	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35574357--35574401	20	2.2	21	88	4	65	0	11	0	88	0.50
35576321--35576500	94	1.9	94	90	0	288	33	16	17	32	1.93
35585143--35585182	14	2.9	14	84	0	53	17	0	30	52	1.45
35585348--35585532	7	26.6	7	69	5	97	20	1	31	46	1.60
35585416--35585482	34	1.9	35	85	8	93	17	1	31	49	1.56
35585382--35585499	62	1.9	62	83	0	155	20	1	29	48	1.59
35586568--35586612	18	2.5	18	92	7	74	22	40	11	26	1.87
35590996--35591301	161	1.9	161	95	0	549	32	5	31	30	1.81
35599359--35599431	30	2.4	31	86	4	94	32	1	47	17	1.56
35602134--35602325	53	3.6	51	82	9	217	22	29	22	26	1.99
35606010--35606042	17	1.9	17	93	0	57	39	18	15	27	1.90
35609718--35609958	50	4.7	50	81	5	232	22	27	22	27	1.99
35609718--35609910	100	1.9	100	84	0	260	20	28	22	27	1.99
35623047--35623293	33	7.4	32	72	8	138	31	16	25	26	1.96
35623086--35623261	33	5.3	33	73	6	142	30	18	25	25	1.98
35623050--35623291	133	1.8	133	84	1	333	31	16	25	26	1.97
35628806--35628850	20	2.2	20	88	4	63	24	20	40	15	1.91
35634305--35634499	98	2.0	98	93	0	336	37	23	9	29	1.87
35635954--35636047	19	4.8	19	81	5	116	34	18	10	37	1.85
35635928--35636047	19	5.9	21	73	22	96	36	17	9	36	1.82
35636250--35637564	217	6.1	217	97	0	2423	26	23	20	29	1.99
35637534--35638159	44	14.3	44	63	13	148	25	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35637557--35638172	132	4.7	132	92	0	991	25	24	19	31	1.98
35639381--35639434	12	4.3	12	81	9	56	3	18	0	77	0.91
35639394--35639430	19	1.9	20	94	5	67	0	21	0	78	0.75
35660700--35660726	14	1.9	14	100	0	54	37	22	25	14	1.93
35662644--35662936	50	5.8	50	89	2	444	21	30	23	24	1.99
35663273--35663330	30	1.9	31	82	6	75	27	22	6	43	1.79
35670249--35670483	50	4.7	50	84	0	281	21	28	21	28	1.99
35670827--35670883	30	1.9	30	82	3	71	28	22	5	43	1.75
35677265--35677317	27	2.0	27	84	0	70	69	0	7	22	1.13
35677282--35677338	17	3.3	17	85	2	69	75	3	1	19	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189