genome.fa.s20.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  116  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32593420--32593475	20	2.8	19	83	8	67	62	3	0	33	1.12
32598870--32598915	23	2.0	23	91	0	74	34	8	17	39	1.80
32600925--32601320	196	2.0	196	90	0	623	27	20	15	37	1.92
32604341--32604389	17	2.8	18	78	9	57	42	8	2	46	1.45
32606359--32606426	28	2.4	28	85	4	84	30	26	25	17	1.97
32606778--32607028	27	9.3	27	85	3	292	17	19	19	43	1.88
32611557--32611617	25	2.4	25	81	10	72	57	0	3	39	1.15
32612006--32612174	84	2.0	84	100	0	338	43	9	6	40	1.63
32612256--32612297	16	2.7	15	85	7	57	50	0	2	47	1.14
32612405--32613480	536	2.0	536	100	0	2152	39	16	13	30	1.87
32619814--32619850	18	2.0	19	89	5	58	51	0	43	5	1.24
32620233--32620266	17	2.1	16	88	5	50	61	0	2	35	1.11
32623981--32624014	13	2.6	13	95	0	59	23	0	20	55	1.43
32626386--32626584	76	2.6	76	79	7	215	24	19	20	36	1.95
32630276--32630388	36	2.9	40	72	10	108	28	23	15	31	1.96
32630279--32630476	76	2.6	75	86	1	261	25	22	18	33	1.97
32632967--32632999	14	2.4	14	94	0	57	33	12	12	42	1.79
32633312--32633362	14	3.6	14	79	7	59	17	17	7	56	1.63
32633340--32633397	28	2.1	28	83	0	71	24	15	5	55	1.61
32633512--32633609	50	1.9	52	89	4	155	43	0	8	47	1.32
32640831--32640977	49	3.0	49	86	0	204	39	19	20	21	1.93
32646565--32646601	18	2.1	18	89	0	56	40	16	21	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32651204--32651242	16	2.5	15	87	8	51	41	10	0	48	1.37
32653449--32653527	37	2.1	37	81	9	90	29	32	15	22	1.95
32653646--32653986	47	7.1	49	90	3	500	29	30	9	31	1.88
32657669--32657706	20	2.0	20	89	5	60	44	7	5	42	1.56
32657762--32658670	464	2.0	464	94	0	1613	41	13	13	31	1.84
32659846--32659908	27	2.3	28	94	5	112	41	11	0	47	1.39
32667931--32667986	29	1.9	29	85	0	76	17	17	25	39	1.92
32673305--32673346	19	2.2	19	83	8	50	45	9	0	45	1.36
32676846--32677018	75	2.3	76	87	4	242	32	13	10	43	1.78
32687767--32687843	39	2.0	39	97	0	145	41	12	7	37	1.73
32697611--32697650	19	2.0	20	85	4	55	27	7	17	47	1.74
32699080--32699156	39	2.0	39	97	0	145	41	12	7	37	1.73
32706207--32706246	19	2.0	20	85	4	55	27	7	17	47	1.74
32717863--32717896	15	2.3	14	85	14	50	38	0	32	29	1.58
32722381--32722421	20	2.0	20	95	0	73	43	26	4	24	1.74
32727059--32727341	104	2.9	94	75	14	286	27	19	16	35	1.94
32727826--32727873	21	2.3	21	82	3	62	25	20	27	27	1.99
32730748--32730786	20	2.0	20	90	10	62	17	23	2	56	1.53
32731039--32731182	50	2.9	50	81	4	155	21	27	22	29	1.99
32737837--32738895	527	2.0	526	93	1	1811	35	14	20	29	1.92
32740225--32740296	30	2.4	30	84	9	85	25	23	20	30	1.99
32742387--32742499	39	2.9	39	91	1	172	33	3	17	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32745290--32745321	10	3.4	10	87	12	50	25	0	0	75	0.81
32749154--32749196	22	2.0	22	95	0	77	39	4	11	44	1.62
32763972--32764031	26	2.3	26	82	2	75	20	10	3	66	1.35
32765097--32765889	264	3.0	264	96	1	1418	36	12	17	33	1.87
32768054--32768078	3	8.3	3	100	0	50	32	0	0	68	0.90
32768337--32769111	100	7.7	100	89	1	1149	24	20	22	32	1.98
32768337--32769096	50	15.2	50	69	7	441	25	19	22	32	1.97
32768432--32769107	50	13.5	49	71	5	487	24	19	22	32	1.98
32770270--32770353	42	2.0	42	80	0	96	27	28	13	30	1.94
32770423--32770477	7	7.9	7	93	6	94	14	14	0	70	1.16
32778534--32778558	9	2.8	9	100	0	50	20	0	8	72	1.10
32779180--32779205	5	5.2	5	100	0	52	42	19	19	19	1.90
32779269--32779315	21	2.3	21	78	10	53	31	14	29	23	1.95
32779957--32780016	30	2.0	31	86	3	86	40	0	38	21	1.54
32784484--32784523	8	5.1	8	87	3	55	82	0	17	0	0.67
32785416--32785507	6	15.5	6	75	13	66	69	11	5	13	1.34
32785426--32785506	30	2.7	31	81	7	105	71	11	6	11	1.30
32786376--32786429	7	8.0	7	87	8	85	68	0	16	14	1.21
32786376--32786429	13	4.0	14	85	9	85	68	0	16	14	1.21
32786376--32786429	20	2.7	20	97	0	99	68	0	16	14	1.21
32787814--32787942	44	3.0	43	78	8	102	34	23	21	20	1.96
32788005--32788089	44	1.9	44	87	0	125	31	21	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787872--32788288	142	2.9	142	91	0	674	33	18	20	27	1.96
32788360--32788613	100	2.5	100	88	1	366	33	23	19	23	1.97
32788360--32788885	50	10.7	50	70	8	263	32	23	20	23	1.98
32788457--32788804	192	1.8	191	86	1	500	31	24	20	23	1.98
32788631--32788888	100	2.6	100	83	2	295	31	22	20	25	1.98
32793910--32793938	11	2.5	12	88	11	51	58	0	0	41	0.98
32800489--32800607	58	2.0	59	84	7	154	42	21	10	25	1.84
32816269--32816386	51	2.3	51	89	0	182	22	8	34	34	1.84
32816467--32816557	27	3.4	27	72	3	67	14	14	36	35	1.86
32818397--32818450	27	2.0	27	85	7	74	27	18	18	35	1.94
32819822--32819867	18	2.6	18	85	0	65	56	4	15	23	1.57
32819851--32819876	12	2.2	12	100	0	52	61	0	7	30	1.24
32820500--32820543	21	2.1	21	87	4	63	72	2	20	4	1.13
32821009--32821214	27	7.7	27	85	0	270	19	16	22	41	1.90
32822942--32823035	47	2.0	47	97	0	179	35	31	13	19	1.91
32823287--32823420	50	2.7	50	91	0	223	37	23	14	23	1.93
32824990--32825034	13	3.5	13	93	0	72	24	6	15	53	1.66
32825498--32825538	21	2.0	21	100	0	82	34	0	9	56	1.32
32826106--32826139	17	2.0	17	88	0	50	14	29	20	35	1.93
32828134--32828167	15	2.3	15	89	0	50	82	8	5	2	0.93
32828134--32828180	13	3.4	15	83	16	66	78	10	6	4	1.06
32842773--32842797	5	5.0	5	100	0	50	60	20	0	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32846813--32846843	15	2.1	15	100	0	62	38	6	32	22	1.80
32851153--32851183	15	2.1	15	100	0	62	38	6	32	22	1.80
32856513--32856540	14	2.0	14	100	0	56	71	7	0	21	1.09
32856664--32856736	27	2.6	26	79	12	65	57	5	4	32	1.41
32856684--32856740	30	1.9	30	89	7	89	57	3	3	35	1.33
32856905--32856948	17	2.6	17	85	3	63	47	0	11	40	1.39
32856874--32856988	60	1.9	58	82	10	142	51	1	11	35	1.48
32857068--32857150	3	28.0	3	78	11	82	65	2	2	30	1.18
32857412--32857469	22	2.6	22	81	7	64	43	17	5	34	1.71
32857448--32857495	21	2.4	20	83	10	62	39	14	10	35	1.80
32857482--32857507	12	2.2	12	100	0	52	42	15	7	34	1.75
32858291--32858498	44	4.7	44	82	4	251	30	25	16	26	1.97
32858561--32858699	44	3.2	43	67	11	129	15	26	30	26	1.96
32858498--32858729	88	2.6	88	93	0	392	18	22	31	28	1.97
32858498--32858720	44	5.1	43	64	10	119	18	22	31	26	1.97
32858710--32858998	44	6.5	44	76	5	269	29	24	17	28	1.97
32858724--32858998	132	2.1	133	92	0	453	29	25	16	28	1.97
32864019--32864057	14	2.5	16	88	12	55	76	5	0	17	0.96
32864186--32864258	27	2.6	26	79	12	65	57	5	4	32	1.41
32864206--32864262	30	1.9	30	89	7	89	57	3	3	35	1.33
32864425--32864468	17	2.6	17	82	3	54	50	0	11	38	1.39
32864431--32864484	27	2.1	27	86	6	76	50	1	11	37	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32864592--32864630	3	13.0	3	94	0	69	64	0	2	33	1.08
32864930--32864987	22	2.7	21	76	10	53	41	17	3	37	1.66
32864943--32865013	21	3.4	20	78	11	63	40	14	7	38	1.73
32873039--32873404	47	7.7	47	92	1	572	33	9	29	28	1.88
32873526--32873638	37	3.1	37	90	0	163	21	16	33	28	1.95
32892257--32892298	22	1.9	22	95	0	75	23	7	0	69	1.13
32892616--32892640	12	2.1	12	100	0	50	32	8	44	16	1.76
32896952--32896999	20	2.4	20	100	0	96	54	4	14	27	1.59
32896952--32897006	20	2.8	20	91	2	67	58	3	12	25	1.51
32896969--32897012	20	2.2	20	83	0	52	54	2	15	27	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189