genome.fa.s20.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  184  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54889687--54889711	5	5.0	5	100	0	50	80	0	0	20	0.72
54890908--54891000	34	2.6	35	81	8	91	37	4	25	32	1.76
54890977--54891069	34	2.7	34	88	1	123	35	0	31	33	1.58
54891114--54891208	41	2.4	39	81	10	111	15	24	20	40	1.91
54891129--54891249	41	3.0	41	83	0	143	19	25	17	38	1.93
54894773--54894801	14	2.0	15	93	6	51	27	27	10	34	1.89
54897080--54897123	15	2.8	16	82	6	54	63	0	2	34	1.07
54897079--54897130	23	2.3	22	90	3	77	61	0	1	36	1.07
54897285--54897320	12	2.9	12	95	4	63	38	0	0	61	0.96
54897506--54897557	19	2.7	19	85	8	70	23	3	1	71	1.13
54910213--54910254	18	2.3	18	84	8	50	21	4	0	73	1.01
54912280--54912321	21	2.0	21	90	0	66	23	21	40	14	1.90
54913465--54913499	18	1.9	18	88	11	54	54	34	2	8	1.46
54916565--54916623	25	2.5	24	88	5	84	35	1	1	61	1.16
54917185--54917244	29	2.1	29	83	0	75	26	31	6	35	1.82
54921368--54921420	24	2.2	24	93	0	88	22	7	5	64	1.41
54923540--54923567	14	2.0	14	100	0	56	50	0	0	50	1.00
54930268--54930411	68	2.1	68	80	5	157	50	2	4	42	1.38
54932191--54932228	18	2.1	19	85	14	53	68	0	10	21	1.19
54936120--54936153	17	1.9	18	94	5	61	29	5	0	64	1.17
54938845--54938899	24	2.3	24	83	0	65	34	23	25	16	1.95
54939450--54939478	10	2.7	11	89	10	51	34	20	0	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54944052--54944181	51	2.5	52	90	3	192	26	14	30	28	1.95
54944515--54944542	14	2.0	14	100	0	56	35	7	42	14	1.73
54955382--54955430	19	2.5	19	93	3	80	16	18	4	61	1.50
54957833--54957888	27	2.1	27	100	0	112	46	3	16	33	1.64
54969043--54969102	31	1.9	31	86	6	86	36	13	8	41	1.74
54969043--54969111	31	2.2	32	82	10	81	36	14	8	40	1.77
54973703--54974293	200	3.0	196	86	4	786	28	10	12	48	1.74
54983128--54983167	19	2.1	19	90	9	64	57	0	0	42	0.98
54994818--54994848	7	4.3	7	95	4	53	70	0	0	29	0.87
54995595--54995639	20	2.2	20	85	14	58	28	4	13	53	1.59
54998118--54998305	41	4.6	41	86	4	238	27	26	20	26	1.99
54998155--54998305	41	3.8	40	92	5	243	24	26	21	27	2.00
55003202--55003250	24	2.0	24	96	0	89	24	16	18	40	1.90
55004441--55004468	2	14.0	2	100	0	56	0	50	0	50	1.00
55016619--55017247	312	2.0	312	90	0	988	18	25	15	40	1.90
55027708--55027752	6	7.5	6	89	0	72	20	33	15	31	1.93
55027708--55027752	18	2.5	18	100	0	90	20	33	15	31	1.93
55036819--55036848	12	2.6	11	90	10	51	10	20	16	53	1.71
55052558--55052584	2	13.5	2	100	0	54	51	0	48	0	1.00
55057766--55057815	26	1.9	26	84	8	66	32	6	4	58	1.41
55062282--55062493	18	11.7	18	66	22	97	39	0	3	56	1.22
55061952--55062381	233	1.8	237	93	4	751	41	1	4	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55062168--55062493	100	3.3	98	75	16	291	39	1	3	54	1.27
55061952--55062381	113	3.6	120	93	4	730	41	1	4	51	1.34
55062346--55062509	81	2.0	81	98	0	319	40	1	3	53	1.29
55062729--55062781	16	3.3	16	89	0	79	26	26	3	43	1.72
55065529--55065732	98	2.1	97	83	4	252	28	7	9	54	1.60
55065699--55065757	28	2.0	29	81	12	68	38	1	0	59	1.08
55066072--55066248	97	1.8	97	86	0	255	52	13	7	26	1.66
55072262--55072293	12	2.6	13	85	14	50	62	6	0	31	1.20
55077950--55077983	17	2.0	17	88	0	50	64	0	2	32	1.08
55079383--55079428	19	2.4	19	88	0	65	26	21	8	43	1.81
55081594--55081654	13	4.7	13	79	0	68	34	22	6	36	1.81
55085616--55085680	27	2.4	27	78	0	76	26	29	33	10	1.90
55085723--55085772	17	3.0	16	76	23	50	76	4	20	0	0.95
55085739--55085773	10	3.4	10	92	4	52	74	2	22	0	0.95
55085733--55085781	20	2.4	21	75	3	55	69	4	26	0	1.06
55085760--55085859	43	2.2	46	79	15	120	59	2	39	0	1.09
55087310--55087360	27	1.9	26	88	4	75	50	1	9	37	1.47
55087310--55087373	27	2.4	26	80	12	67	54	1	9	34	1.42
55087449--55087529	36	2.2	37	78	14	87	50	2	8	38	1.46
55087848--55087888	20	2.2	19	86	8	57	63	17	14	4	1.47
55088037--55088094	22	2.7	21	76	10	53	41	17	3	37	1.66
55088457--55088506	13	3.9	12	79	10	55	68	2	4	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55088281--55088742	159	2.9	160	91	2	727	54	7	10	27	1.61
55091028--55091054	8	3.4	8	100	0	54	51	25	0	22	1.48
55093699--55093857	79	2.0	79	100	0	318	40	20	8	30	1.83
55094028--55094054	3	9.0	3	100	0	54	66	0	0	33	0.92
55094062--55094203	76	1.9	76	88	2	214	52	11	5	30	1.61
55094238--55094342	42	2.3	43	76	18	108	58	11	0	29	1.40
55094230--55094320	17	5.2	19	69	27	60	54	13	2	29	1.50
55094273--55094337	22	3.0	22	72	21	66	58	10	1	29	1.41
55094303--55094488	57	3.2	59	76	16	203	52	10	3	33	1.51
55094359--55094434	13	5.5	13	71	20	64	59	11	1	27	1.41
55094414--55094453	19	2.2	18	90	4	62	62	10	0	27	1.27
55097898--55097984	30	2.9	31	75	17	101	32	13	20	33	1.92
55103836--55103868	17	1.9	17	93	0	57	27	3	21	48	1.64
55108363--55108405	11	3.8	11	80	17	52	30	2	2	65	1.18
55108366--55108409	23	1.9	23	90	0	70	31	2	4	61	1.28
55109162--55109258	20	4.8	20	71	8	81	45	20	23	10	1.82
55114530--55114680	56	2.7	56	91	0	239	28	23	10	37	1.88
55120651--55120675	12	2.1	12	100	0	50	0	16	0	84	0.63
55121545--55121593	20	2.4	21	76	10	57	65	0	24	10	1.23
55121679--55121728	21	2.4	21	79	0	64	70	2	26	2	1.09
55131400--55131437	18	2.0	20	90	10	62	28	0	13	57	1.36
55132888--55132951	23	2.8	23	88	4	94	20	21	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55133167--55133196	6	5.0	6	100	0	60	50	0	16	33	1.46
55137287--55137311	13	1.9	13	100	0	50	60	0	0	40	0.97
55142970--55143021	21	2.5	21	78	6	61	32	40	0	26	1.57
55143081--55143127	23	2.0	23	100	0	94	46	6	4	42	1.48
55143086--55143142	23	2.4	23	88	2	78	50	7	3	38	1.46
55143716--55143873	41	3.8	40	83	7	174	30	23	21	24	1.99
55143717--55143873	82	1.9	82	82	2	199	29	23	21	24	1.99
55144929--55145128	107	1.9	107	92	0	337	32	15	25	26	1.95
55145948--55145998	19	2.9	18	82	8	52	41	3	15	39	1.66
55145948--55145996	18	2.8	17	82	11	55	40	4	16	38	1.67
55146737--55146788	24	2.1	25	89	3	79	19	23	19	38	1.93
55154387--55154544	84	1.9	84	84	7	214	22	18	28	30	1.98
55154375--55154544	43	4.0	43	78	13	199	22	18	28	31	1.97
55154705--55154736	16	1.9	17	93	6	57	40	0	21	37	1.54
55157557--55157594	19	2.0	19	100	0	76	42	0	21	36	1.53
55167526--55167582	25	2.3	25	85	8	73	17	24	22	35	1.95
55173017--55173157	44	3.2	44	75	7	135	29	19	14	35	1.92
55173013--55173407	44	8.8	44	71	12	128	28	22	16	32	1.95
55181319--55181795	236	2.0	237	88	3	710	26	23	18	31	1.97
55183834--55183875	12	3.3	12	81	18	50	71	0	2	26	0.98
55191894--55191929	18	2.0	18	88	0	54	27	11	22	38	1.88
55192116--55192142	13	2.1	13	100	0	54	40	44	0	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55192237--55192303	9	7.4	9	81	6	82	25	10	20	43	1.84
55192237--55192303	27	2.5	27	83	9	100	25	10	20	43	1.84
55194418--55194444	13	2.1	13	100	0	54	29	0	22	48	1.51
55195534--55195692	43	3.7	42	77	10	162	25	18	25	30	1.98
55200070--55200111	21	2.0	21	100	0	84	33	9	33	23	1.87
55200158--55200189	12	2.6	13	85	14	50	37	0	6	56	1.25
55212855--55212879	13	1.9	13	100	0	50	8	8	16	68	1.38
55218977--55219013	9	4.1	9	92	0	65	45	13	10	29	1.77
55219062--55219113	27	1.9	27	92	0	86	23	40	0	36	1.55
55220020--55220045	5	5.2	5	100	0	52	19	19	19	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189