genome.fa.s20.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  48  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13881205--13881256	18	2.8	19	85	8	63	40	0	7	51	1.30
13890531--13890594	33	2.0	32	84	6	85	35	12	12	39	1.81
13893613--13893657	24	2.0	24	91	8	76	48	2	4	44	1.35
13895644--13895771	64	2.0	64	93	0	220	38	2	22	36	1.67
13902874--13902900	12	2.2	12	100	0	54	25	33	7	33	1.84
13903780--13903810	15	2.1	15	93	0	53	32	16	6	45	1.72
13904861--13904889	15	1.9	15	100	0	58	27	20	13	37	1.91
13909016--13909093	25	3.0	25	77	15	79	61	0	5	33	1.18
13910155--13910200	9	5.2	9	92	2	76	21	10	28	39	1.87
13911129--13911179	17	3.4	17	67	27	51	27	11	3	56	1.52
13912128--13912416	148	2.0	148	88	4	431	43	3	8	44	1.53
13912913--13912967	25	2.3	23	76	11	58	32	3	7	56	1.44
13913764--13913793	4	7.5	4	100	0	60	50	0	0	50	1.00
13919281--13919329	21	2.3	21	89	3	71	24	2	32	40	1.67
13919302--13919387	35	2.5	35	90	5	131	27	4	31	36	1.78
13921090--13921132	22	2.0	22	100	0	86	51	23	6	18	1.70
13922194--13922240	20	2.3	21	85	7	62	31	0	6	61	1.21
13923427--13923500	3	24.7	3	100	0	148	67	0	32	0	0.91
13928973--13929030	29	2.0	29	100	0	116	17	3	34	44	1.65
13932253--13932301	15	3.1	17	71	14	50	48	0	0	51	1.00
13935947--13936034	31	2.9	28	75	11	86	35	4	12	47	1.62
13936156--13936221	31	2.2	29	83	5	78	40	13	12	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13936156--13936231	29	2.5	30	81	8	84	39	15	11	32	1.84
13939293--13939323	16	1.9	16	100	0	62	45	0	3	51	1.17
13939413--13939479	27	2.5	27	95	0	116	31	19	32	16	1.94
13939527--13939570	11	4.3	11	80	16	58	54	6	2	36	1.40
13939660--13939732	22	2.9	26	84	15	100	53	12	0	34	1.38
13939765--13939821	27	2.1	27	90	0	87	35	1	14	49	1.53
13939985--13940036	19	2.8	19	94	5	90	50	11	0	38	1.39
13940247--13940287	19	2.2	19	95	0	73	51	17	0	31	1.46
13940304--13940406	27	3.8	27	98	0	197	22	39	22	15	1.91
13940448--13941237	394	2.0	393	99	0	1553	38	10	20	31	1.86
13947864--13947902	15	2.6	15	100	0	78	28	23	10	38	1.87
13947742--13948037	157	1.9	157	97	0	565	36	22	5	35	1.77
13951191--13951368	96	1.9	96	95	0	320	26	15	25	32	1.96
13963181--13963265	42	2.0	42	100	0	170	50	16	9	23	1.74
13965043--13965150	57	1.9	56	90	1	171	24	23	21	31	1.98
13966071--13966164	19	4.8	19	90	5	152	37	10	15	36	1.83
13966071--13966171	40	2.7	38	88	8	152	37	9	16	35	1.82
13966103--13966188	21	4.0	22	79	14	83	38	6	16	38	1.75
13966778--13966828	26	1.9	26	84	4	66	33	5	3	56	1.42
13967494--13967688	98	2.0	98	92	0	327	29	8	23	38	1.84
13972987--13973771	132	5.9	132	94	0	1347	27	17	24	30	1.97
13973560--13973751	44	4.4	43	68	8	127	29	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13973070--13973683	44	14.0	44	65	6	204	28	17	24	29	1.97
13974000--13974072	19	3.8	19	94	0	128	36	10	16	35	1.84
13974032--13974095	19	3.0	22	86	8	80	37	6	17	39	1.75
13974061--13974105	23	2.0	23	86	4	65	33	4	15	46	1.66
13974685--13974735	26	1.9	26	84	4	66	33	5	3	56	1.42
13975399--13975593	98	2.0	98	92	0	327	29	9	22	38	1.85
13977442--13977470	8	3.6	8	100	0	58	75	0	0	24	0.80
13980193--13980229	13	2.9	13	96	4	67	16	24	27	32	1.96
13985714--13985912	52	3.9	52	84	5	230	29	29	16	25	1.97
13987497--13987540	19	2.4	19	85	7	56	47	6	0	45	1.29
13988697--13988761	29	2.2	29	80	0	76	36	3	12	47	1.57
13989103--13989150	25	1.9	25	83	8	62	41	4	2	52	1.32
13991937--13991974	16	2.4	16	90	0	58	31	0	34	34	1.58
13991953--13992047	45	2.1	44	86	1	127	33	6	26	33	1.82
13992207--13992241	18	2.0	17	88	5	52	54	0	0	45	0.99
13992334--13992375	15	2.7	16	82	14	52	52	2	0	45	1.13
13992343--13992384	15	2.9	15	82	10	52	52	0	0	47	1.00
13992128--13992400	147	1.9	147	96	1	512	47	3	2	46	1.32
13992453--13992504	15	3.6	15	80	12	56	53	1	0	44	1.11
13992382--13992567	59	3.1	59	66	16	157	47	7	2	41	1.46
13992337--13992624	118	2.4	120	92	5	464	50	5	2	42	1.38
13992590--13992623	15	2.3	15	90	10	52	55	0	2	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13992640--13992846	91	2.3	90	87	3	281	46	3	4	45	1.39
13992690--13992828	47	3.0	46	68	17	126	48	4	2	43	1.37
13994236--13994262	11	2.5	11	100	0	54	51	18	7	22	1.70
14001553--14001612	29	2.0	30	81	15	72	43	5	21	30	1.74
14007439--14007496	30	1.9	30	86	6	82	44	5	20	29	1.73
14012997--14013029	17	1.9	17	93	0	57	15	6	12	66	1.42
14015907--14015937	14	2.2	14	94	0	53	29	19	12	38	1.89
14018019--14018074	20	2.8	20	83	0	76	44	3	7	44	1.48
14018019--14018081	20	3.2	19	82	8	72	41	3	9	46	1.52
14021016--14021066	23	2.3	23	96	3	95	17	21	15	45	1.86
14027717--14027786	23	3.2	22	88	6	97	54	0	2	42	1.15
14027743--14027797	23	2.3	23	90	3	83	54	0	3	41	1.18
14028207--14028236	14	2.1	14	93	0	51	46	13	0	40	1.43
14031070--14031278	52	4.1	51	84	9	275	34	13	22	28	1.92
14031156--14031189	7	4.7	7	88	3	50	44	2	26	26	1.69
14031174--14031389	37	5.3	44	86	9	190	36	14	21	26	1.93
14031242--14031387	37	4.0	37	92	1	233	36	16	21	25	1.94
14032458--14032498	15	2.8	14	85	7	55	51	7	4	36	1.51
14035288--14035321	15	2.3	15	94	0	59	50	0	14	35	1.44
14036841--14039020	725	3.0	725	98	0	4234	32	13	21	32	1.93
14040979--14041135	42	3.7	42	79	1	163	15	23	16	43	1.86
14040980--14041135	21	7.4	21	70	2	80	16	23	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14041097--14041150	21	2.7	21	80	5	58	11	22	22	44	1.84
14045244--14045295	22	2.4	23	84	12	74	38	0	34	26	1.57
14045523--14045570	17	2.7	17	87	6	60	72	0	2	25	0.95
14059392--14059505	42	2.7	42	78	2	113	16	21	19	42	1.89
14060725--14060774	21	2.4	21	80	3	66	76	2	12	10	1.11
14061010--14061055	23	2.0	23	100	0	92	39	13	8	39	1.75
14062267--14062350	25	3.2	25	67	18	71	52	13	4	29	1.60
14062223--14062360	54	2.5	54	94	1	231	52	13	4	29	1.59
14062337--14062384	24	2.0	24	95	0	87	50	10	6	33	1.62
14063225--14063263	4	9.8	4	100	0	78	51	23	0	25	1.49
14067811--14067856	18	2.8	18	84	15	64	0	30	41	28	1.56
14069629--14069671	13	3.1	14	84	12	54	60	0	0	39	0.97
14072108--14072157	3	16.3	3	83	4	64	60	0	6	34	1.21
14072156--14072181	3	8.7	3	100	0	52	34	0	30	34	1.58
14073988--14074654	151	4.4	153	90	3	979	30	10	8	50	1.66
14073988--14074655	306	2.2	305	89	3	1013	30	10	8	50	1.66
14074681--14074907	116	1.9	120	88	5	347	52	4	11	30	1.59
14074796--14075194	150	2.7	148	88	3	559	54	7	8	29	1.57
14075266--14075343	29	2.9	27	80	16	83	29	0	7	62	1.23
14075266--14075343	27	2.9	26	77	17	88	29	0	7	62	1.23
14079517--14079560	18	2.4	18	81	7	54	20	27	9	43	1.82
14094537--14094609	36	2.0	36	100	0	146	43	19	16	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14097500--14097998	125	4.0	124	79	5	513	31	16	21	31	1.95
14097500--14097998	250	2.0	250	86	2	707	31	16	21	31	1.95
14101197--14102262	22	48.5	22	76	7	785	23	0	30	45	1.57
14101200--14101318	51	2.4	51	84	7	154	25	0	31	42	1.61
14101252--14102262	65	15.8	64	81	7	796	23	0	30	45	1.57
14101252--14102262	87	11.8	87	80	6	931	23	0	30	45	1.57
14101228--14101376	29	5.1	29	66	19	87	21	0	32	44	1.57
14101752--14101826	37	2.0	37	89	0	114	24	0	28	48	1.52
14101756--14101834	37	2.1	37	85	0	104	25	0	27	46	1.53
14104640--14104683	11	3.8	12	80	19	58	43	0	31	25	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189