genome.fa.s20.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  52  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14942621--14942673	20	2.7	20	91	2	81	64	0	5	30	1.17
14942649--14942747	21	4.7	22	67	21	61	65	2	5	27	1.24
14942937--14942992	20	2.8	20	78	10	53	26	7	5	60	1.44
14942973--14943043	30	2.4	30	78	7	81	33	4	4	57	1.37
14942976--14943041	29	2.3	28	82	10	80	31	4	4	59	1.38
14942999--14943098	41	2.5	41	75	16	100	38	2	2	58	1.21
14943058--14943123	17	3.7	17	76	11	53	27	4	0	68	1.09
14944787--14944834	18	2.5	19	83	13	62	4	20	12	62	1.46
14948585--14948804	75	3.0	73	92	3	350	46	15	3	34	1.63
14948585--14948804	74	2.9	75	93	0	361	46	15	3	34	1.63
14949972--14950030	30	1.9	30	86	3	82	47	3	20	28	1.66
14952582--14952723	49	2.9	50	90	2	214	26	20	30	23	1.98
14955578--14955619	18	2.3	19	79	4	50	35	2	2	59	1.23
14955598--14955648	17	2.9	17	80	8	59	31	1	5	60	1.31
14958898--14958945	19	2.3	21	82	13	64	47	2	4	45	1.33
14969217--14969257	17	2.4	17	87	0	64	60	0	2	36	1.10
14973493--14973552	30	2.0	29	84	9	77	46	0	13	40	1.43
14973922--14973975	26	2.1	25	83	13	65	55	1	0	42	1.10
14973951--14974066	33	3.5	33	77	12	123	53	3	3	39	1.35
14984698--14984762	32	2.0	32	100	0	130	32	18	12	36	1.88
14995956--14995980	11	2.3	11	100	0	50	92	0	0	8	0.40
14996814--14996860	6	7.8	6	100	0	94	0	0	34	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15007720--15007745	7	3.7	7	100	0	52	42	0	0	57	0.98
15013795--15013853	29	2.0	30	83	3	75	49	16	6	27	1.71
15021106--15021143	17	2.2	18	90	4	60	7	13	2	76	1.11
15024891--15024939	19	2.4	20	76	13	55	51	2	2	44	1.24
15025923--15025980	15	3.4	16	76	19	55	44	3	1	50	1.29
15034779--15034822	22	2.0	22	86	4	61	36	2	4	56	1.32
15045309--15045479	86	2.0	86	91	0	279	36	9	18	35	1.84
15048586--15048634	26	1.9	25	91	4	80	30	14	12	42	1.82
15050596--15050802	106	2.0	106	100	0	414	26	14	16	42	1.86
15052170--15052247	26	3.0	26	86	1	102	38	11	23	26	1.89
15053258--15053284	13	2.1	13	100	0	54	29	7	7	55	1.55
15054391--15054587	45	4.4	45	90	0	295	23	19	16	40	1.91
15057116--15057265	41	3.6	41	97	0	273	27	20	28	23	1.99
15060221--15060268	18	2.6	17	83	9	51	16	8	2	72	1.18
15064175--15064214	20	2.0	20	100	0	80	30	25	15	30	1.95
15071226--15071279	19	2.8	19	80	8	56	24	11	0	64	1.25
15071247--15071298	19	2.8	18	85	8	61	19	9	1	69	1.26
15071268--15071312	19	2.4	19	80	0	54	28	6	4	60	1.42
15072865--15072906	3	14.0	3	100	0	84	33	0	0	66	0.92
15077036--15077098	30	2.1	30	96	0	117	57	15	3	23	1.53
15078357--15078412	24	2.3	24	84	6	69	37	1	0	60	1.07
15079438--15079463	11	2.4	11	100	0	52	30	26	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15080830--15080878	24	2.0	24	85	14	66	51	0	6	42	1.27
15080827--15080875	16	3.1	16	77	14	57	48	0	8	42	1.32
15086357--15086400	22	2.0	22	86	0	61	52	0	0	47	1.00
15086400--15086438	18	2.2	18	86	9	53	41	2	2	53	1.28
15086424--15086460	16	2.3	16	86	13	58	59	0	0	40	0.97
15086493--15086550	15	3.6	15	74	17	62	50	1	0	48	1.11
15088085--15088114	6	5.0	6	95	0	51	36	0	13	50	1.42
15088559--15088608	3	17.3	3	75	8	50	58	0	4	38	1.17
15089784--15089861	27	2.9	27	90	3	122	30	21	30	16	1.96
15089936--15090005	19	3.7	19	82	3	97	37	10	0	52	1.35
15089941--15090011	37	1.9	37	100	0	142	39	11	0	49	1.39
15090209--15090264	18	3.0	19	78	5	78	37	12	0	50	1.41
15090204--15090266	18	3.4	18	72	12	65	39	11	1	47	1.49
15090209--15090287	37	2.1	37	81	4	88	43	10	1	45	1.45
15090284--15090354	37	1.9	37	100	0	142	49	0	11	39	1.39
15090290--15090358	19	3.7	19	82	5	97	52	0	10	37	1.36
15090434--15090511	27	2.9	27	92	0	129	16	32	21	29	1.96
15090583--15090648	28	2.4	28	87	5	89	48	3	9	39	1.50
15092379--15092495	41	2.8	42	79	3	128	24	17	28	29	1.98
15098793--15098877	42	2.0	41	88	2	125	37	3	9	49	1.52
15104441--15104504	32	2.0	32	96	0	119	26	43	10	18	1.83
15106110--15106199	41	2.2	41	89	0	135	16	23	34	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15114308--15114429	23	5.3	23	89	0	190	21	20	27	31	1.98
15114310--15114429	46	2.6	46	95	0	213	20	20	27	30	1.98
15116778--15116869	17	5.5	17	71	19	59	41	3	2	53	1.29
15116824--15116857	14	2.3	14	90	10	50	41	0	2	55	1.15
15125354--15125418	31	2.1	31	97	0	121	38	0	1	60	1.07
15125388--15125509	42	3.0	39	74	19	133	39	4	1	54	1.32
15125392--15125451	19	3.1	19	72	13	59	38	3	0	58	1.15
15125392--15125453	20	3.1	20	73	13	65	38	3	0	58	1.15
15128889--15128939	16	3.3	15	88	5	66	66	1	1	29	1.13
15128894--15128939	8	5.8	8	84	7	58	65	2	2	30	1.16
15129054--15129106	23	2.5	22	74	14	58	56	5	5	32	1.46
15129069--15129154	25	3.7	24	79	10	81	55	5	6	31	1.50
15129177--15129310	25	5.6	25	71	11	93	58	2	3	35	1.28
15129829--15129972	30	4.8	30	88	5	123	22	4	47	26	1.69
15129821--15129997	60	3.0	60	85	7	227	21	3	47	27	1.68
15129867--15129997	30	4.4	30	93	1	219	19	3	48	27	1.66
15130852--15131023	93	1.8	93	83	4	231	31	19	21	26	1.97
15130955--15131848	74	11.9	75	80	10	477	32	19	17	31	1.94
15130812--15131848	149	6.7	154	82	9	933	32	19	17	31	1.95
15131032--15131206	92	1.9	90	86	6	248	34	20	17	28	1.95
15131798--15132090	114	2.6	114	86	10	435	36	23	13	26	1.92
15144756--15144809	23	2.4	23	84	6	67	57	7	3	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15144759--15144829	3	23.3	3	71	8	54	60	5	2	30	1.34
15145418--15145447	10	3.1	10	90	9	53	20	0	0	80	0.72
15149381--15149485	52	2.0	52	98	0	201	42	9	20	27	1.82
15152851--15152875	11	2.3	11	100	0	50	28	0	16	56	1.41
15174373--15174540	38	4.3	38	63	18	103	45	1	5	47	1.36
15174404--15174437	17	2.0	17	88	0	50	47	0	0	52	1.00
15174527--15174578	15	3.6	15	80	12	56	44	0	1	53	1.11
15174283--15174699	120	3.5	120	94	1	730	43	1	5	49	1.35
15174643--15174677	18	2.0	17	88	5	52	45	0	0	54	0.99
15174819--15174923	44	2.5	40	76	15	113	31	29	4	34	1.78
15174817--15174926	45	2.6	44	81	8	131	31	29	5	33	1.80
15174907--15174958	16	3.2	16	88	0	77	34	34	0	30	1.58
15175833--15175877	3	16.0	3	77	13	51	64	2	0	33	1.06
15180722--15180795	39	2.0	37	89	7	114	56	10	5	27	1.55
15181135--15181193	22	2.7	21	84	10	73	22	38	0	38	1.54
15181135--15181185	11	4.6	11	88	7	68	25	37	0	37	1.56
15181135--15181193	11	5.4	10	84	13	64	22	38	0	38	1.54
15182733--15183026	126	2.3	126	92	0	473	28	21	17	32	1.96
15183827--15183895	20	3.4	20	76	9	68	52	1	0	46	1.09
15183839--15183895	21	2.7	22	81	15	75	54	0	0	45	0.99
15183837--15183908	21	3.5	20	76	12	65	52	1	1	44	1.18
15184580--15184620	18	2.2	19	91	4	66	73	2	0	24	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15185351--15185566	23	9.5	23	66	17	67	31	19	16	32	1.94
15185282--15185566	91	3.1	91	91	0	444	31	19	15	33	1.92
15185375--15185544	45	3.8	45	67	12	132	28	20	15	35	1.93
15185605--15185674	30	2.3	30	85	0	95	25	27	22	24	2.00
15185608--15185658	15	3.4	15	81	10	68	25	25	23	25	2.00
15189578--15189628	24	2.2	23	79	6	59	39	1	1	56	1.22
15190824--15190870	24	2.0	23	84	8	60	65	8	4	21	1.37
15198057--15198099	22	1.9	22	85	4	59	27	11	39	20	1.88
15196890--15199010	707	3.0	706	95	1	3851	29	16	24	30	1.96
15207279--15207332	20	2.7	19	80	16	56	35	1	7	55	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189