genome.fa.s20.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  73  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20315088--20315188	31	3.3	30	74	10	98	61	3	2	31	1.29
20315218--20315250	10	3.2	11	87	12	52	66	0	6	27	1.15
20315085--20315188	10	10.3	10	68	12	61	62	3	2	30	1.28
20315664--20315709	20	2.2	21	85	11	60	41	4	0	54	1.20
20316203--20316267	4	16.2	4	100	0	130	24	0	26	49	1.51
20325765--20325797	15	2.2	15	94	0	57	27	15	15	42	1.86
20325881--20325923	16	2.7	16	78	10	52	37	13	11	37	1.82
20325881--20325958	32	2.5	30	81	10	84	38	16	8	35	1.80
20334561--20334603	22	1.9	22	81	13	52	53	6	9	30	1.59
20344696--20344802	25	4.3	25	82	11	130	27	24	17	30	1.97
20353238--20353275	18	2.1	18	100	0	76	39	26	23	10	1.87
20361797--20361842	24	1.9	24	90	0	74	34	10	13	41	1.79
20363254--20363298	21	2.1	21	84	8	56	42	6	4	46	1.50
20363888--20363926	18	2.1	19	85	4	53	41	0	0	58	0.98
20364267--20364306	9	4.4	9	87	0	62	42	20	10	27	1.83
20364326--20364374	6	7.7	6	84	8	62	20	4	16	59	1.53
20364415--20364458	18	2.4	18	88	0	61	13	0	43	43	1.44
20375297--20375339	16	2.9	15	80	10	52	37	6	0	55	1.27
20399317--20399430	44	2.6	44	80	2	131	23	26	22	27	2.00
20399596--20399827	87	2.7	87	88	1	322	25	22	20	31	1.98
20401059--20401097	7	5.6	7	82	11	53	17	12	0	69	1.19
20401061--20401108	21	2.2	21	88	3	69	14	14	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20401654--20401688	17	2.1	17	100	0	70	22	5	17	54	1.64
20410784--20410888	17	6.2	17	70	17	58	40	2	2	54	1.30
20410929--20410962	18	1.9	17	94	5	59	50	0	2	47	1.16
20417522--20417553	7	4.6	7	96	0	55	21	0	0	78	0.76
20420996--20421070	37	2.1	36	82	12	91	34	16	22	26	1.95
20421303--20421404	37	2.8	37	80	5	100	35	9	23	31	1.87
20421332--20421469	71	1.9	71	82	0	168	34	10	23	31	1.88
20424351--20424381	7	4.4	7	100	0	62	12	0	70	16	1.16
20427093--20427356	101	2.5	103	79	12	288	31	7	8	51	1.61
20436473--20436518	23	2.0	23	100	0	92	47	4	17	30	1.67
20440517--20440566	12	4.1	12	80	19	59	26	36	2	36	1.68
20442259--20442309	15	3.5	15	71	15	52	49	13	13	23	1.78
20444898--20445014	9	12.6	9	83	7	135	37	32	6	23	1.81
20444959--20445014	29	1.9	29	92	0	94	42	30	5	21	1.75
20445010--20445118	17	6.1	17	69	16	69	49	15	2	32	1.59
20445012--20445123	37	3.0	36	92	5	179	46	16	3	33	1.64
20445012--20445064	20	2.9	18	75	8	54	49	16	1	32	1.57
20447933--20447971	16	2.5	16	95	4	71	53	0	10	35	1.35
20448189--20448236	25	1.9	25	95	0	87	33	6	25	35	1.81
20450872--20450986	32	3.6	32	80	10	137	36	9	10	43	1.72
20455509--20455547	18	2.2	18	86	9	53	61	0	0	38	0.96
20455509--20455549	19	2.2	19	86	4	57	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20457324--20457415	45	2.0	47	93	4	161	34	20	11	32	1.89
20468959--20468984	5	5.2	5	100	0	52	80	0	0	19	0.71
20474491--20474520	3	10.0	3	92	0	51	63	0	0	36	0.95
20475227--20475266	20	2.0	20	85	9	55	2	15	5	77	1.04
20475397--20475464	31	2.3	28	78	9	73	41	2	1	54	1.24
20475443--20475481	21	1.9	20	84	5	51	46	2	0	51	1.14
20475870--20475894	12	2.1	12	100	0	50	16	24	8	52	1.70
20475951--20476000	23	2.2	23	81	0	55	36	12	16	36	1.85
20476123--20476163	9	4.6	9	84	0	55	43	2	0	53	1.13
20478500--20478543	17	2.6	16	82	13	52	38	2	0	59	1.10
20478500--20478554	18	3.1	18	77	15	60	43	1	0	54	1.10
20478500--20478555	9	6.3	9	76	10	53	42	1	0	55	1.10
20479540--20479594	21	2.7	21	83	5	60	29	5	0	65	1.15
20501432--20501489	25	2.3	24	82	5	71	41	1	1	55	1.20
20501488--20501524	19	1.9	19	88	0	56	35	2	0	62	1.10
20504188--20504247	28	2.1	28	90	0	93	25	20	13	41	1.88
20507350--20507534	46	4.0	46	90	0	289	35	8	25	30	1.86
20509198--20509290	38	2.4	38	90	0	141	37	16	12	33	1.86
20509450--20509512	22	2.7	23	72	16	58	25	20	15	38	1.92
20511113--20511217	46	2.2	46	78	9	106	36	4	1	57	1.31
20517310--20517354	3	15.0	3	100	0	90	66	0	0	33	0.92
20517632--20517675	11	4.0	11	82	11	54	31	0	6	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20517646--20517684	13	3.2	12	85	14	53	33	0	2	64	1.08
20517633--20517689	11	5.0	11	77	8	51	38	0	3	57	1.16
20518355--20518389	18	1.9	18	88	0	52	42	0	5	51	1.25
20522114--20522197	41	2.0	41	100	0	168	32	9	14	44	1.77
20526576--20526618	14	3.0	14	82	3	59	23	4	0	72	1.04
20527410--20527477	29	2.3	29	85	5	84	48	14	13	23	1.79
20528779--20528821	12	3.3	13	77	9	52	30	2	6	60	1.35
20528776--20528815	13	3.2	13	78	7	55	35	0	7	57	1.27
20528776--20528828	25	2.1	25	85	0	70	37	1	7	52	1.41
20537086--20537264	27	6.6	27	88	0	232	13	15	40	30	1.87
20537073--20537264	81	2.4	81	85	0	276	14	15	40	30	1.87
20537086--20537264	54	3.3	54	88	0	259	13	15	40	30	1.87
20541821--20541943	33	3.8	32	80	9	131	22	44	4	28	1.71
20541922--20541964	21	2.0	21	90	0	68	16	46	6	30	1.73
20541903--20542030	54	2.4	54	81	6	152	23	42	5	28	1.76
20548307--20549003	134	5.2	134	82	2	713	36	13	20	30	1.90
20548307--20548912	268	2.3	268	85	2	788	35	13	21	30	1.91
20548986--20549061	39	1.9	39	86	0	107	36	14	26	22	1.92
20571245--20571353	23	5.0	23	84	8	147	36	23	22	16	1.94
20571708--20571739	16	1.9	17	93	6	57	25	21	0	53	1.46
20575408--20575443	16	2.2	17	90	5	56	47	0	11	41	1.39
20576373--20576439	17	3.6	17	72	18	62	28	11	13	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20576362--20576438	39	2.0	39	94	0	136	28	12	14	44	1.82
20582528--20582586	24	2.4	23	81	10	64	20	10	32	37	1.86
20587017--20587060	24	1.9	24	90	9	74	36	0	2	61	1.09
20587126--20587295	59	2.9	59	98	0	322	44	9	5	40	1.59
20587306--20587347	16	2.6	16	92	0	66	42	7	2	47	1.43
20587321--20587376	23	2.5	23	82	2	69	44	1	1	51	1.22
20587603--20587672	27	2.6	27	86	6	97	41	10	1	47	1.46
20587821--20587951	4	32.0	4	73	19	94	70	0	29	0	0.88
20587829--20587962	18	6.9	18	71	18	85	68	0	31	0	0.90
20587822--20588022	39	5.2	39	79	16	199	70	0	29	0	0.88
20587847--20587983	45	3.2	45	82	12	139	70	0	29	0	0.87
20587821--20588016	79	2.6	78	84	11	246	69	0	30	0	0.89
20593335--20593379	18	2.5	18	85	0	63	17	46	6	28	1.73
20594229--20594278	3	16.7	3	100	0	100	68	32	0	0	0.90
20594394--20594422	10	2.7	11	89	10	51	0	27	0	72	0.85
20594520--20594604	27	3.1	27	89	0	134	15	29	29	25	1.96
20594667--20594735	27	2.5	27	83	6	86	47	1	10	40	1.46
20594671--20594735	28	2.4	27	84	7	87	47	1	10	40	1.48
20596103--20596167	23	2.7	25	90	9	116	58	0	3	38	1.14
20598915--20598957	20	2.1	20	91	4	68	51	0	0	48	1.00
20604706--20604771	34	2.0	34	84	3	89	27	21	24	27	1.99
20605244--20605439	27	7.3	26	84	4	239	18	17	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20605226--20605439	81	2.7	79	85	5	286	19	17	21	42	1.90
20606742--20606894	74	2.1	74	98	0	297	26	31	8	33	1.86
20611715--20611881	37	4.5	37	68	20	107	32	23	17	25	1.97
20611667--20611888	110	2.0	110	92	1	374	33	22	17	25	1.96
20611819--20611924	37	2.7	39	75	10	108	34	21	16	27	1.94
20612838--20612880	16	2.6	16	85	10	52	2	27	0	69	1.00
20621983--20622017	15	2.3	15	100	0	70	22	22	11	42	1.85
20630955--20631000	18	2.5	18	86	10	58	28	2	2	67	1.14
20631301--20631347	20	2.3	22	75	20	57	74	0	25	0	0.82
20636502--20636545	16	2.7	16	85	3	52	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189