genome.fa.s20.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  172  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51117926--51117969	21	2.0	22	83	12	56	38	0	2	59	1.10
51128375--51128408	10	3.4	10	87	0	50	79	2	11	5	1.02
51128433--51128458	11	2.4	11	100	0	52	50	7	42	0	1.31
51129118--51129166	18	2.7	18	93	0	80	36	0	8	55	1.30
51129120--51129167	3	16.0	3	82	0	60	35	0	6	58	1.23
51129120--51129167	12	4.0	12	91	0	69	35	0	6	58	1.23
51129308--51129379	24	2.9	24	78	15	67	44	0	22	33	1.53
51129523--51129618	39	2.5	39	80	6	108	20	23	28	27	1.99
51130658--51130696	15	2.6	14	84	11	51	38	0	15	46	1.46
51131673--51131833	70	2.3	70	93	0	277	29	14	18	37	1.90
51134831--51134905	27	2.9	25	76	9	78	38	6	21	33	1.79
51137246--51137361	60	1.9	60	91	0	187	34	14	10	40	1.80
51155599--51155635	19	2.0	19	89	5	58	35	5	2	56	1.36
51160596--51160639	19	2.2	21	84	11	58	56	4	0	38	1.20
51160789--51160818	3	10.3	3	92	7	53	33	0	0	66	0.92
51160787--51160818	11	2.8	11	95	4	55	34	0	0	65	0.93
51167569--51167618	22	2.3	22	82	6	57	50	4	12	34	1.58
51184006--51184087	32	2.5	33	84	5	105	28	2	17	52	1.57
51185735--51185761	6	4.5	6	100	0	54	0	37	14	48	1.45
51187639--51187669	16	1.9	16	93	0	53	48	9	6	35	1.62
51187840--51187901	18	3.4	18	78	10	65	35	0	9	54	1.33
51187972--51188009	18	2.1	18	85	9	51	23	5	15	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51188894--51188918	4	6.2	4	100	0	50	24	0	24	52	1.48
51195018--51195107	42	2.2	42	80	7	105	25	26	30	17	1.98
51195289--51195359	22	3.2	22	88	7	101	33	26	1	38	1.65
51195330--51195389	30	2.0	30	93	0	102	33	33	0	33	1.58
51195331--51195396	11	6.2	12	70	25	51	30	33	0	36	1.58
51195360--51195401	22	1.9	22	95	0	75	35	33	0	30	1.58
51195447--51195507	29	2.1	29	84	6	79	37	0	1	60	1.07
51195598--51195631	15	2.3	15	90	5	52	26	0	5	67	1.13
51197776--51198495	51	13.6	51	82	11	796	46	20	0	33	1.56
51198022--51198068	23	2.3	19	82	17	51	46	21	0	31	1.51
51198417--51198501	23	3.8	21	95	3	98	51	16	0	31	1.45
51197776--51198541	28	28.7	28	82	12	820	46	20	0	32	1.56
51203004--51203089	19	4.4	19	81	13	88	24	8	1	66	1.26
51206942--51207003	26	2.4	26	88	0	106	41	6	0	51	1.27
51207148--51207218	37	1.9	37	97	0	133	35	7	14	43	1.72
51207688--51207783	19	5.2	19	78	5	115	38	11	0	50	1.39
51207696--51207783	18	4.8	18	79	6	97	37	11	0	51	1.38
51207688--51207783	37	2.6	37	98	0	183	38	11	0	50	1.39
51207820--51207949	37	3.5	37	95	3	228	49	0	12	38	1.41
51207820--51207949	19	7.1	19	72	10	126	49	0	12	38	1.41
51208490--51208541	27	1.9	27	96	0	95	13	32	23	30	1.93
51208492--51208550	27	2.2	27	87	0	82	13	28	27	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51208600--51208665	28	2.4	27	94	5	114	43	0	9	46	1.35
51208906--51208956	20	2.6	20	70	14	52	49	0	0	50	1.00
51217980--51218056	39	1.9	41	94	5	140	23	7	15	53	1.68
51217980--51218056	40	1.9	40	92	5	129	23	7	15	53	1.68
51219076--51219115	20	2.1	18	86	13	53	25	15	2	57	1.50
51221061--51221181	50	2.4	51	92	1	208	28	26	13	32	1.93
51221157--51221188	7	4.6	7	96	0	55	18	31	9	40	1.83
51221157--51221193	14	2.6	14	86	0	56	21	29	10	37	1.88
51221174--51221230	28	2.0	28	100	0	114	24	17	21	36	1.94
51221120--51221281	86	2.0	83	89	8	251	27	21	16	33	1.95
51221069--51221318	137	1.8	136	92	0	428	27	24	15	33	1.95
51221202--51221362	51	3.2	51	90	0	268	27	22	16	34	1.95
51231734--51231871	73	1.9	71	91	2	222	47	13	8	30	1.72
51232977--51233038	18	3.6	17	71	16	56	29	6	1	62	1.29
51245643--51245705	32	2.0	32	96	0	117	25	28	12	33	1.92
51245675--51246141	47	9.9	46	90	4	609	28	29	9	32	1.89
51247591--51247710	56	2.1	56	98	0	231	22	23	9	45	1.81
51257697--51257759	23	2.6	25	73	14	60	11	6	17	65	1.45
51258795--51258825	16	1.9	16	100	0	62	25	12	0	61	1.32
51258796--51258830	16	2.2	16	90	5	54	28	17	0	54	1.43
51260439--51260480	18	2.3	18	87	0	57	71	4	2	21	1.16
51260438--51260505	18	3.7	18	70	5	55	69	2	1	26	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51260460--51260511	24	2.1	24	82	10	61	67	3	1	26	1.18
51261214--51261242	11	2.6	11	100	0	58	34	17	0	48	1.47
51261310--51261352	22	2.0	22	86	9	61	25	4	2	67	1.22
51261372--51261427	20	2.9	19	78	10	60	28	3	1	66	1.19
51261372--51261453	19	4.3	19	76	10	62	26	3	3	65	1.26
51277638--51277689	24	2.0	25	85	10	70	36	1	3	57	1.28
51279918--51280044	50	2.5	52	78	7	136	37	13	14	34	1.85
51280088--51280129	20	2.2	19	83	12	50	59	4	2	33	1.31
51280088--51280130	21	2.2	19	83	8	50	60	4	2	32	1.30
51282779--51282830	26	2.1	24	82	7	59	34	0	0	65	0.93
51285591--51285646	26	2.2	26	86	0	76	46	1	0	51	1.11
51285599--51285647	14	3.6	14	79	20	68	44	0	0	55	0.99
51289946--51289970	12	2.1	12	100	0	50	52	16	16	16	1.76
51295115--51295150	18	2.1	17	89	5	54	22	2	0	75	0.94
51300991--51301162	45	3.8	44	83	3	166	40	16	20	22	1.91
51301085--51301197	45	2.5	45	91	0	181	36	17	22	23	1.95
51301134--51301252	45	2.6	45	78	0	112	38	18	21	21	1.93
51301221--51301343	45	2.7	45	82	1	138	45	14	21	17	1.85
51305772--51305808	19	1.9	19	88	0	56	24	8	35	32	1.85
51317208--51317275	29	2.3	29	90	5	111	52	1	13	32	1.49
51317820--51317859	14	2.9	14	84	0	53	32	7	17	42	1.77
51317843--51317880	20	1.9	20	88	0	58	28	7	13	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51317828--51317894	34	1.9	35	87	3	100	31	7	13	47	1.70
51317981--51318008	14	2.0	14	100	0	56	42	0	0	57	0.99
51319282--51319350	35	1.9	36	91	2	113	53	17	1	27	1.52
51319318--51319393	27	2.8	27	80	7	82	53	19	2	23	1.57
51322837--51322888	25	2.1	25	85	7	70	40	11	25	23	1.88
51333271--51333314	23	1.9	22	82	17	54	38	22	0	38	1.55
51333359--51333452	45	2.1	45	89	0	143	31	22	19	26	1.97
51333454--51333644	51	3.8	50	72	9	172	31	26	16	24	1.96
51337284--51337321	18	2.1	19	95	5	69	10	7	10	71	1.32
51337624--51337677	22	2.5	21	84	3	72	74	7	3	14	1.18
51340760--51340852	48	1.9	48	91	0	150	33	6	10	49	1.63
51348062--51348137	23	3.3	23	83	5	100	28	25	22	23	1.99
51348363--51348401	18	2.2	17	86	13	53	46	20	0	33	1.51
51360612--51362038	709	2.0	709	99	0	2845	30	22	18	29	1.97
51369969--51369999	15	2.1	15	100	0	62	32	16	19	32	1.94
51371456--51371496	15	2.5	17	80	11	50	41	0	0	58	0.98
51375316--51375362	17	2.6	18	80	13	51	27	2	6	63	1.30
51380119--51380149	9	3.4	9	90	0	53	25	12	22	38	1.90
51380266--51380308	21	2.0	21	82	8	52	23	34	0	41	1.55
51380444--51380503	30	2.0	31	86	3	86	20	40	0	40	1.52
51382430--51382465	17	2.1	17	89	0	54	25	0	5	69	1.10
51388442--51388485	21	2.1	21	100	0	88	40	9	18	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51388868--51389058	105	1.9	101	85	4	265	32	15	23	29	1.95
51388868--51389080	105	2.1	101	83	5	257	33	15	22	28	1.95
51389854--51390008	72	2.2	73	91	2	251	22	27	23	27	1.99
51390431--51390483	24	2.2	25	89	3	81	43	22	1	32	1.64
51394345--51394451	51	2.1	51	89	0	169	34	26	9	29	1.88
51395297--51395507	117	1.8	117	93	0	368	42	24	10	22	1.85
51395695--51395738	16	2.7	16	85	3	52	34	0	22	43	1.54
51396672--51396720	20	2.5	19	80	9	62	69	2	20	8	1.24
51396969--51396997	6	5.0	6	95	4	51	48	0	0	51	1.00
51396972--51397005	12	2.8	13	86	13	54	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189