genome.fa.s20.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  144  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43907023--43907066	12	3.7	12	84	0	52	18	2	6	72	1.17
43907023--43907066	18	2.4	18	88	0	61	18	2	6	72	1.17
43907464--43907513	20	2.4	21	90	10	84	12	0	28	60	1.32
43920492--43920675	38	4.7	37	70	17	131	43	1	4	51	1.29
43920501--43920692	56	3.3	55	73	19	199	42	1	3	52	1.25
43920474--43920721	120	2.1	120	97	0	469	43	0	4	51	1.27
43920637--43920666	15	1.9	16	93	6	53	43	0	6	50	1.28
43920925--43920957	16	2.1	16	94	0	57	21	33	6	39	1.78
43924632--43924665	16	2.1	16	88	5	50	8	0	14	76	1.01
43931995--43932112	30	4.0	29	76	6	103	24	27	11	35	1.91
43932000--43932208	59	3.6	58	85	4	226	23	25	13	37	1.91
43932029--43932208	55	3.1	57	84	5	229	23	25	13	37	1.91
43932000--43932208	29	7.2	29	74	6	183	23	25	13	37	1.91
43940409--43940697	29	9.9	29	75	4	215	23	23	13	39	1.90
43940409--43940679	59	4.6	59	80	4	264	22	23	14	39	1.91
43940526--43940697	86	2.0	88	83	2	222	22	25	13	38	1.91
43944626--43944820	43	4.6	43	83	3	198	34	24	17	23	1.96
43944627--43944855	85	2.7	86	80	4	230	34	24	16	24	1.95
43944715--43944878	43	3.8	43	82	5	174	29	22	18	29	1.97
43946249--43946807	278	2.0	278	100	0	1118	38	18	14	27	1.90
43949552--43949591	20	2.0	20	90	4	64	27	7	7	57	1.53
43949511--43949604	23	4.2	23	71	8	77	36	8	6	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43949905--43950044	7	19.7	7	74	8	59	38	40	0	21	1.54
43949974--43950036	21	3.0	21	81	11	83	33	46	0	20	1.51
43949974--43950039	14	4.6	14	82	1	69	33	46	0	19	1.50
43949970--43950044	21	3.5	21	80	8	80	38	41	0	20	1.52
43956681--43956718	15	2.4	17	78	17	53	36	26	23	13	1.91
43956686--43956718	15	2.2	15	94	0	57	39	27	21	12	1.88
43958087--43958224	25	5.6	24	77	6	82	29	23	23	23	1.99
43958128--43958189	25	2.5	25	91	0	97	30	24	22	22	1.99
43958131--43958226	50	1.9	50	82	4	122	32	21	25	20	1.98
43971759--43971797	20	1.9	20	84	5	51	46	5	0	48	1.24
43973635--43973679	13	3.5	13	93	0	81	20	8	15	55	1.66
43974884--43974919	17	2.1	18	89	5	56	22	13	22	41	1.89
43982192--43982259	23	3.0	23	95	0	118	30	26	22	20	1.98
43985774--43985847	37	2.0	37	94	0	130	40	8	18	32	1.80
43992822--43992855	13	2.6	13	100	0	68	29	0	0	70	0.87
43993043--43993096	20	2.7	19	80	8	72	24	3	5	66	1.29
43993355--43993398	18	2.4	18	92	0	70	52	11	2	34	1.50
43993709--43993771	33	1.9	33	84	12	85	46	0	1	52	1.10
43995634--43995680	24	1.9	25	87	12	71	59	6	0	34	1.23
43996310--43996442	61	2.2	60	85	4	180	51	3	6	39	1.42
43999845--43999898	26	2.0	26	85	3	72	59	16	7	16	1.59
44001496--44001537	21	2.0	21	85	0	57	14	21	2	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44008913--44009017	11	9.4	11	70	14	63	57	0	2	40	1.14
44008962--44009027	31	2.2	30	89	5	105	57	0	1	40	1.08
44009000--44009033	18	2.0	16	88	11	50	58	0	0	41	0.98
44009000--44009047	17	2.8	18	81	9	55	58	0	0	41	0.98
44008946--44009035	42	2.2	43	86	8	123	58	0	2	38	1.10
44013718--44013755	13	2.9	13	88	7	51	60	0	2	36	1.11
44015969--44016016	22	2.1	23	85	11	64	66	6	0	27	1.15
44019588--44019743	79	2.0	79	100	0	312	17	3	23	54	1.60
44019947--44020047	52	1.9	52	93	0	175	32	20	18	27	1.96
44023144--44023302	79	2.0	79	100	0	318	17	3	23	54	1.59
44026187--44026498	87	3.7	86	84	5	357	47	11	10	30	1.73
44026188--44026498	174	1.8	169	82	6	401	47	11	10	30	1.73
44026881--44026911	14	2.2	14	94	0	53	32	29	12	25	1.93
44027996--44028034	20	2.0	20	94	0	69	30	7	10	51	1.64
44028048--44028074	12	2.2	12	100	0	54	22	14	7	55	1.64
44030192--44030227	14	2.6	14	100	0	72	22	30	33	13	1.93
44030568--44030626	20	2.9	20	80	10	66	33	1	0	64	1.04
44030575--44030621	19	2.4	18	83	13	58	31	0	0	68	0.90
44032556--44032759	59	3.4	59	88	0	309	35	3	8	52	1.50
44032812--44032884	29	2.5	28	78	12	76	38	12	6	42	1.69
44033570--44033610	22	2.0	20	85	9	55	60	0	0	39	0.96
44034333--44034394	31	2.0	31	87	0	88	43	4	8	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44049471--44049790	69	4.7	69	79	8	292	22	23	15	38	1.93
44049471--44049790	138	2.3	137	80	5	351	22	23	15	38	1.93
44052252--44052352	29	3.7	27	70	20	84	52	15	0	31	1.43
44052236--44052362	54	2.4	54	87	9	172	53	14	1	29	1.51
44052289--44052361	9	8.1	9	72	11	60	53	15	1	30	1.50
44052236--44052349	41	2.8	40	76	17	110	52	15	0	30	1.49
44052244--44052368	62	2.0	65	82	9	159	53	15	1	29	1.51
44052236--44052368	13	10.0	13	72	18	105	53	15	1	30	1.51
44052263--44052368	25	4.6	25	71	20	81	51	16	0	31	1.50
44054067--44054092	4	6.5	4	100	0	52	23	0	0	76	0.78
44058469--44058506	20	2.0	20	84	5	51	50	0	2	47	1.15
44061219--44061271	19	2.7	20	77	11	56	28	7	3	60	1.41
44061282--44061368	9	9.3	9	72	16	63	26	2	1	70	1.07
44061282--44061385	19	5.6	18	75	10	84	28	2	0	67	1.11
44061274--44061379	56	1.9	56	90	3	169	31	2	0	65	1.14
44061282--44061368	10	9.2	10	71	18	53	26	2	1	70	1.07
44061274--44061363	29	3.2	28	82	7	128	31	2	1	65	1.12
44061459--44061687	90	2.5	90	85	6	320	32	8	22	35	1.85
44068033--44068070	16	2.3	17	90	4	60	86	7	2	2	0.74
44068509--44068553	19	2.2	21	84	7	58	82	4	13	0	0.82
44068507--44068567	13	4.5	13	77	6	59	78	3	18	0	0.88
44068507--44068569	32	2.1	29	85	8	81	77	3	19	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44069916--44070047	44	3.0	45	70	12	128	26	24	24	25	2.00
44069885--44070025	44	3.2	44	68	11	117	24	23	25	26	2.00
44069538--44070292	87	8.7	87	89	0	1071	29	23	22	24	1.99
44069538--44070331	350	2.3	349	86	3	1098	29	23	22	24	1.99
44070493--44070985	132	3.7	132	89	1	704	30	19	23	26	1.98
44070493--44070980	263	1.9	263	87	2	730	30	19	23	26	1.98
44072473--44072501	12	2.4	12	100	0	58	41	0	6	51	1.28
44074117--44074160	13	3.5	13	78	12	56	36	2	6	54	1.40
44074110--44074161	24	2.2	24	92	0	86	34	1	7	55	1.39
44076431--44076470	20	2.0	21	95	5	73	47	0	17	35	1.48
44077237--44077277	21	2.0	21	85	4	57	26	4	21	46	1.72
44086381--44086451	5	13.2	6	72	24	61	49	0	0	50	1.00
44086381--44086450	16	4.4	16	73	20	65	48	0	0	51	1.00
44086378--44086453	21	3.5	22	83	15	97	47	0	0	52	1.00
44086492--44086540	20	2.7	18	77	22	57	51	4	2	42	1.32
44096547--44096584	14	2.6	15	84	15	53	47	0	0	52	1.00
44096547--44096585	15	2.7	15	88	11	55	46	0	0	53	1.00
44100116--44100249	42	3.2	41	72	16	96	40	14	23	20	1.90
44102545--44102751	102	2.0	102	100	0	414	39	20	12	28	1.88
44112235--44112311	38	2.0	38	100	0	154	18	37	7	36	1.80
44113255--44113415	83	2.0	80	86	3	223	27	13	19	40	1.88
44122324--44122391	24	2.8	24	88	0	109	25	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44122507--44122550	23	1.9	24	86	9	65	38	15	9	36	1.80
44125422--44125468	15	2.9	16	73	20	53	36	2	0	61	1.08
44126553--44126594	20	2.2	20	82	4	50	69	23	4	2	1.20
44128383--44128473	45	2.0	45	100	0	182	35	6	0	58	1.24
44128392--44128489	45	2.4	41	83	11	103	38	8	0	53	1.31
44130236--44130274	21	1.9	21	89	5	62	46	5	5	43	1.48
44130607--44130710	51	2.0	51	92	0	172	19	32	17	30	1.95
44131470--44131521	20	2.6	20	78	0	50	44	11	5	38	1.65
44138256--44138287	15	2.1	15	94	0	55	28	0	6	65	1.16
44138371--44138431	27	2.3	27	91	0	95	32	19	16	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189