genome.fa.s20.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  151  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45586336--45586403	29	2.4	29	92	2	111	45	0	11	42	1.40
45586329--45586468	33	4.5	31	75	15	112	42	0	13	44	1.44
45586523--45587042	126	4.1	125	89	1	754	37	17	16	28	1.92
45586525--45587042	251	2.1	253	88	1	774	37	17	16	28	1.92
45590586--45590628	18	2.4	18	92	0	68	41	9	27	20	1.83
45592156--45592206	24	2.1	24	85	7	68	68	1	0	29	1.00
45592379--45592439	32	1.9	32	86	6	88	40	1	26	31	1.66
45606057--45606093	18	2.1	18	89	0	56	32	0	0	67	0.91
45606062--45606108	22	2.1	22	88	7	69	34	0	0	65	0.93
45606337--45606378	11	3.7	11	76	17	50	54	0	11	33	1.37
45610046--45610084	16	2.4	16	95	0	69	38	5	25	30	1.78
45613176--45613228	13	4.1	13	76	9	54	37	24	5	32	1.79
45613924--45613977	26	2.2	25	90	6	83	31	1	0	66	1.02
45613913--45613979	26	2.6	25	81	13	82	35	1	0	62	1.04
45619730--45619769	21	1.9	21	89	0	62	30	0	7	62	1.23
45619730--45619770	10	4.0	10	84	6	55	29	0	9	60	1.28
45620244--45620310	34	1.9	35	90	3	109	31	7	14	46	1.73
45622420--45622449	16	1.9	15	93	6	51	20	0	10	70	1.16
45625131--45625206	26	2.8	27	90	6	109	68	2	10	18	1.30
45627278--45627355	39	2.0	39	82	9	97	67	5	21	5	1.30
45636074--45636133	25	2.4	25	94	0	102	38	6	0	55	1.27
45638791--45638873	34	2.5	32	86	9	121	31	16	4	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45639142--45639207	23	2.7	23	76	9	69	39	1	1	57	1.17
45639460--45639578	60	2.0	60	96	0	220	31	0	13	53	1.45
45640536--45640565	15	2.0	15	100	0	60	40	6	13	40	1.71
45644561--45644601	19	2.2	19	100	0	82	43	14	4	36	1.67
45646817--45647033	105	2.1	105	98	0	416	37	8	19	34	1.82
45647716--45647765	24	2.1	24	96	0	91	24	34	14	28	1.93
45648527--45648563	19	1.9	19	94	0	65	37	18	8	35	1.81
45649627--45649667	13	3.2	13	85	0	64	19	0	0	80	0.71
45650216--45650241	7	3.7	7	100	0	52	76	0	11	11	1.01
45651572--45651613	21	2.0	20	86	4	57	33	11	2	52	1.51
45653926--45653993	34	2.0	34	88	5	102	23	22	19	35	1.96
45653933--45654011	34	2.3	33	79	14	81	24	24	21	30	1.99
45656643--45656673	16	1.9	16	93	0	53	35	9	9	45	1.70
45656882--45657064	101	1.8	102	88	5	282	24	16	28	30	1.97
45656879--45657068	51	3.8	49	81	4	202	23	16	29	30	1.96
45657292--45657323	16	2.0	16	93	0	55	59	0	15	25	1.36
45665133--45665237	42	2.5	43	82	1	131	30	29	16	23	1.96
45666989--45667056	34	2.0	34	91	0	109	23	22	19	35	1.96
45666996--45667074	34	2.3	34	80	10	90	24	24	21	30	1.99
45668549--45668628	38	2.0	40	92	4	137	31	38	1	28	1.65
45671975--45672053	12	7.5	11	69	17	53	55	1	2	40	1.21
45671975--45672066	31	3.0	32	88	6	136	58	1	2	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45672023--45672106	39	2.1	40	88	2	125	61	0	3	34	1.13
45673559--45673620	30	2.2	28	83	11	81	50	22	11	16	1.76
45674096--45674138	22	2.0	22	86	4	61	46	16	0	37	1.47
45674096--45674138	7	6.0	7	86	5	59	46	16	0	37	1.47
45677154--45677185	10	3.1	10	95	4	55	37	18	9	34	1.83
45682025--45682053	10	2.9	10	100	0	58	58	20	0	20	1.39
45693212--45693265	21	2.6	21	85	5	65	16	7	3	72	1.22
45706354--45706388	5	7.0	5	100	0	70	20	0	0	80	0.72
45710274--45710308	18	1.9	18	100	0	70	22	17	31	28	1.96
45712237--45712324	42	2.1	42	91	0	140	25	23	14	36	1.93
45716668--45716692	13	1.9	13	100	0	50	48	8	4	40	1.51
45717233--45717298	19	3.3	20	80	16	59	37	1	3	57	1.23
45717241--45717330	18	4.8	18	74	17	60	41	1	3	54	1.24
45718013--45718158	61	2.5	58	81	8	181	50	2	1	45	1.24
45722049--45722150	20	5.3	20	65	13	70	50	1	2	44	1.28
45724143--45724213	35	2.0	35	100	0	142	25	16	23	33	1.96
45724732--45724771	21	1.9	21	84	0	53	42	15	0	42	1.46
45724989--45725014	13	2.0	13	100	0	52	84	0	0	15	0.62
45732546--45732639	45	2.1	45	91	0	152	29	24	20	25	1.99
45732641--45732781	51	2.8	51	83	4	194	32	29	16	21	1.95
45743061--45743105	20	2.2	20	84	0	54	28	15	13	42	1.85
45746561--45746616	18	3.2	17	75	17	53	71	1	19	7	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45758656--45758825	45	3.8	45	87	6	211	40	18	20	21	1.92
45759000--45759082	13	6.3	13	70	6	69	45	1	18	34	1.57
45758997--45759076	39	2.1	39	82	0	97	46	1	16	36	1.55
45764419--45764506	26	3.5	25	83	14	94	26	25	17	31	1.97
45767043--45767124	33	2.8	28	74	16	74	52	23	1	23	1.54
45767756--45767890	39	3.2	39	79	18	162	35	0	0	62	1.06
45767764--45767877	11	11.4	11	76	17	90	36	0	0	61	1.08
45767764--45767877	49	2.3	50	86	5	160	36	0	0	61	1.08
45774231--45774268	19	2.0	20	89	5	60	65	5	0	28	1.14
45774403--45774449	11	4.4	11	74	15	53	34	4	2	59	1.29
45774405--45774455	21	2.4	21	80	6	59	33	3	1	60	1.26
45774431--45774469	18	2.1	18	85	4	51	38	2	0	58	1.12
45774926--45774988	27	2.4	27	97	2	119	42	9	0	47	1.36
45775617--45775712	19	5.2	18	81	5	111	37	12	0	50	1.41
45775617--45775712	37	2.6	37	94	0	174	37	12	0	50	1.41
45775773--45775937	82	2.0	82	98	0	321	38	6	10	45	1.63
45776019--45776084	19	3.5	19	79	4	89	50	1	10	37	1.47
45776464--45776519	29	2.0	29	85	3	78	37	0	8	53	1.32
45777299--45777328	3	10.0	3	100	0	60	33	0	0	66	0.92
45791677--45791733	28	2.0	29	83	10	73	52	0	3	43	1.18
45791677--45791736	27	2.1	28	84	6	77	53	0	3	43	1.17
45791687--45791752	27	2.5	26	75	7	69	51	0	1	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45792156--45792190	11	3.1	11	84	8	52	62	0	5	31	1.18
45792177--45792219	19	2.3	19	87	0	59	60	2	6	30	1.35
45793036--45793089	28	1.9	28	82	14	67	46	1	1	50	1.23
45799142--45799189	19	2.6	19	77	6	55	47	0	2	50	1.12
45799280--45799309	16	1.9	15	93	6	51	40	0	0	60	0.97
45799284--45799327	22	2.0	22	95	0	79	38	0	0	61	0.96
45802163--45802265	50	2.1	50	83	10	131	21	7	16	54	1.67
45806239--45806291	13	4.1	13	80	9	72	37	28	5	28	1.80
45809337--45809378	14	3.1	13	86	13	50	47	7	0	45	1.30
45811679--45811711	16	2.1	16	100	0	66	33	36	12	18	1.88
45819721--45819853	59	2.2	61	81	6	153	48	12	18	21	1.81
45822112--45822141	12	2.5	12	94	0	51	63	0	20	16	1.31
45826603--45826688	2	42.5	2	78	6	84	45	0	45	9	1.35
45826810--45826842	17	1.9	17	93	0	57	63	21	6	9	1.45
45833126--45833166	21	1.9	21	85	14	57	4	17	4	73	1.19
45833437--45833487	18	3.1	16	76	13	50	35	1	0	62	1.06
45833808--45834047	41	5.8	41	85	2	261	21	20	26	32	1.98
45834803--45834827	9	2.8	9	100	0	50	40	0	0	60	0.97
45834963--45835003	21	2.0	21	85	4	57	19	2	41	36	1.65
45834995--45835032	7	5.4	7	87	0	58	18	2	47	31	1.62
45835541--45835732	83	2.3	83	79	3	199	27	17	19	35	1.94
45835990--45836211	83	2.7	83	78	5	225	28	16	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45837213--45837244	12	2.7	12	95	0	55	6	9	15	68	1.36
45838421--45838512	13	6.9	13	74	18	91	45	9	1	43	1.44
45838404--45838655	40	6.5	38	79	10	208	44	11	1	43	1.47
45838418--45838521	13	7.8	13	73	16	79	44	11	1	42	1.51
45838549--45838639	22	4.6	21	72	20	72	43	13	0	42	1.43
45838553--45838642	18	4.9	18	79	14	103	45	12	0	42	1.41
45838553--45838614	17	3.6	17	84	4	70	46	12	0	40	1.42
45838669--45839108	121	3.6	121	96	0	817	40	8	6	44	1.61
45839155--45839358	9	23.8	9	68	16	121	46	21	1	30	1.62
45839162--45839200	20	2.0	19	95	5	69	53	15	0	30	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189