genome.fa.s20.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  164  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49252901--49252958	15	3.7	15	75	8	62	50	0	3	46	1.18
49252908--49252960	16	3.3	16	74	10	63	52	0	3	43	1.19
49252891--49252964	32	2.3	32	90	9	109	56	0	4	39	1.18
49252918--49252964	15	2.9	17	75	6	53	53	0	4	42	1.20
49252987--49253031	20	2.3	19	81	7	54	64	2	0	33	1.06
49252979--49253023	21	2.1	22	83	4	56	62	0	0	37	0.96
49253173--49253223	25	2.0	25	85	7	68	58	5	7	27	1.49
49253327--49253371	20	2.2	20	100	0	90	26	11	4	57	1.52
49256980--49257038	23	2.6	23	83	0	73	15	16	15	52	1.75
49259310--49259446	72	1.9	72	83	5	179	31	12	13	43	1.81
49259382--49259960	84	6.7	89	83	4	539	32	13	10	42	1.79
49259382--49259877	178	2.8	175	81	6	558	33	13	10	41	1.80
49259908--49260020	59	1.9	59	83	3	147	29	12	11	46	1.76
49259922--49260040	59	2.0	59	80	6	134	26	10	13	49	1.75
49272093--49272151	18	3.4	18	78	15	63	61	1	28	8	1.35
49273167--49273232	28	2.3	30	80	15	77	37	1	0	60	1.06
49275960--49276236	27	10.3	27	85	3	301	44	18	17	19	1.88
49276412--49276483	26	2.8	26	91	0	108	15	19	23	41	1.89
49276594--49276659	28	2.4	28	82	2	80	25	21	21	31	1.98
49277848--49277896	25	1.9	26	84	12	66	28	6	10	55	1.57
49281531--49281729	48	4.1	48	88	2	274	30	9	10	49	1.69
49281531--49281714	97	1.9	96	89	3	289	29	9	11	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49283803--49283827	12	2.1	12	100	0	50	48	8	0	44	1.32
49284392--49284463	31	2.3	31	79	13	85	36	30	0	33	1.58
49284460--49284506	14	3.3	14	79	11	51	2	36	0	61	1.08
49290421--49290450	15	2.0	15	93	0	51	36	0	6	56	1.26
49291283--49291365	31	2.6	31	85	9	107	37	2	6	54	1.38
49293336--49293408	27	2.6	28	85	6	96	42	8	1	47	1.41
49293481--49293547	27	2.5	27	92	0	107	26	29	28	14	1.96
49293588--49293705	29	4.3	26	71	26	84	69	0	30	0	0.89
49293606--49293742	39	3.5	40	82	12	164	67	0	32	0	0.91
49293588--49293730	44	3.3	44	76	21	149	68	0	31	0	0.90
49293625--49293738	18	5.7	18	71	22	68	67	0	32	0	0.91
49293770--49293807	19	2.0	19	85	10	51	31	0	7	60	1.25
49300081--49300133	26	2.0	26	85	7	72	47	7	1	43	1.42
49300053--49300165	62	1.9	61	85	7	151	50	11	0	37	1.45
49300312--49300337	3	8.7	3	100	0	52	69	30	0	0	0.89
49300410--49300448	19	2.0	21	85	10	55	69	7	0	23	1.14
49307448--49307952	262	1.9	262	97	0	947	34	18	12	35	1.88
49309191--49309277	28	3.1	28	83	3	113	39	17	10	33	1.83
49319381--49319596	94	2.3	93	83	4	261	43	3	16	37	1.66
49319643--49320069	126	3.4	126	90	0	660	32	19	21	26	1.97
49320018--49320099	43	1.9	44	87	5	123	28	30	20	20	1.98
49323498--49323542	21	2.1	21	83	0	54	8	26	35	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49325417--49325464	24	2.0	25	91	4	80	56	2	0	41	1.11
49326070--49326104	17	2.1	16	89	5	52	45	5	0	48	1.26
49326486--49326525	20	2.0	20	95	0	71	30	7	25	37	1.83
49328991--49329025	17	2.0	18	88	5	54	31	0	25	42	1.55
49329924--49329949	12	2.2	12	100	0	52	30	7	0	61	1.24
49333781--49333841	32	1.9	33	87	9	92	49	0	1	49	1.10
49333781--49333841	30	1.9	32	87	9	90	49	0	1	49	1.10
49333810--49333868	25	2.4	24	83	13	75	47	1	0	50	1.11
49342875--49342946	27	2.7	27	78	2	83	61	2	0	36	1.11
49346414--49346460	12	4.2	12	76	15	55	31	2	19	46	1.61
49346407--49346476	9	7.1	9	73	17	50	30	2	20	47	1.64
49346407--49346462	21	2.7	21	91	0	85	32	1	19	46	1.61
49346371--49346563	91	2.1	88	77	9	192	35	3	17	44	1.64
49346580--49346616	9	4.1	9	96	0	65	35	2	21	40	1.68
49346608--49346683	39	1.9	40	91	2	127	39	9	14	36	1.78
49346681--49346778	9	10.7	9	70	22	53	32	0	17	50	1.47
49346675--49346787	27	4.4	27	76	17	125	31	0	19	48	1.49
49346676--49346766	47	1.9	47	100	0	182	32	0	17	49	1.47
49346690--49346787	18	5.3	18	73	18	85	31	0	19	48	1.49
49346746--49346793	9	5.3	9	82	9	62	27	0	25	47	1.52
49347550--49347584	18	2.1	18	89	10	56	65	5	0	28	1.15
49349372--49349432	32	2.1	29	85	14	81	52	3	1	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49349795--49349828	13	2.4	14	90	9	52	32	47	0	20	1.51
49349788--49349886	35	2.8	35	83	3	119	38	40	0	21	1.53
49349795--49349904	7	15.6	7	68	11	55	38	40	0	21	1.54
49350034--49350060	8	3.4	8	100	0	54	40	44	0	14	1.46
49350052--49350086	13	2.7	13	90	0	52	34	48	0	17	1.47
49350078--49350127	22	2.3	22	86	6	66	38	38	0	24	1.56
49350473--49350625	74	2.1	75	82	6	186	35	20	15	28	1.93
49350783--49351109	114	2.9	113	73	5	266	30	21	16	31	1.95
49352250--49352296	24	2.0	24	82	0	58	61	2	2	34	1.20
49352423--49352469	24	1.9	24	86	4	67	40	2	0	57	1.11
49352950--49352993	21	2.0	21	86	4	61	65	13	2	18	1.36
49353472--49353510	9	4.3	9	80	0	51	53	10	2	33	1.48
49353596--49353662	20	3.4	19	80	15	75	52	5	0	41	1.26
49353644--49353695	26	2.0	26	84	3	68	53	1	0	44	1.11
49354906--49354953	20	2.3	20	82	3	60	27	14	6	52	1.66
49357183--49357229	18	2.5	19	89	3	78	40	0	2	57	1.11
49364195--49364243	20	2.4	21	82	3	55	53	6	0	40	1.26
49364234--49364297	21	2.9	22	74	21	62	54	3	1	40	1.25
49364195--49364317	65	1.9	64	80	8	142	56	5	0	37	1.29
49364866--49364971	10	11.6	9	68	20	60	33	0	3	62	1.20
49364874--49364910	19	1.9	19	89	10	58	27	0	8	64	1.21
49364847--49364924	27	2.9	26	78	16	79	32	1	6	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49364897--49364937	19	2.1	19	86	4	55	41	2	4	51	1.36
49370485--49370518	4	8.0	4	90	9	50	23	0	2	73	0.97
49372862--49372899	17	2.2	18	85	4	51	63	2	23	10	1.39
49372881--49372935	12	4.6	12	73	15	51	63	0	23	12	1.29
49374292--49374324	4	8.0	4	96	3	57	24	0	3	72	0.98
49378350--49378398	9	5.4	9	76	9	55	32	2	12	53	1.50
49378349--49378419	36	2.0	36	83	10	92	35	5	11	47	1.63
49384315--49384385	7	10.1	7	100	0	142	57	14	0	28	1.37
49384387--49384430	7	6.3	7	83	0	52	40	0	27	31	1.56
49384320--49384426	21	5.1	21	88	0	70	52	8	10	28	1.64
49389360--49389384	10	2.5	10	100	0	50	48	0	8	44	1.32
49389368--49389548	55	3.3	55	96	0	344	44	6	12	37	1.66
49389543--49389794	30	8.6	29	89	7	375	27	0	27	44	1.60
49389543--49389795	89	2.9	87	88	5	393	27	0	27	44	1.60
49389729--49389809	23	3.2	23	86	13	99	29	0	24	45	1.53
49389764--49389816	23	2.7	18	85	14	61	28	0	20	50	1.48
49389815--49389999	71	2.6	71	93	0	316	44	12	3	39	1.59
49389819--49389940	36	3.4	35	64	15	88	45	13	2	39	1.56
49390401--49390435	18	1.9	18	88	0	52	31	8	34	25	1.86
49391087--49391111	7	3.6	7	100	0	50	60	12	0	28	1.32
49392179--49392226	21	2.3	21	96	3	89	64	0	0	35	0.94
49392251--49392339	29	3.3	29	62	20	75	40	0	29	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49392228--49392349	51	2.4	51	93	4	201	41	0	29	28	1.56
49392322--49392347	12	2.2	12	100	0	52	38	0	30	30	1.58
49392898--49392950	18	3.0	17	84	13	63	58	0	0	41	0.98
49392924--49392958	18	1.9	18	94	0	61	65	0	0	34	0.93
49392924--49392959	19	1.9	18	88	5	54	66	0	0	33	0.92
49397000--49397024	5	5.0	5	100	0	50	0	20	0	80	0.72
49399721--49399749	2	14.5	2	100	0	58	48	0	0	51	1.00
49400387--49400413	14	1.9	14	100	0	54	81	0	18	0	0.69
49401240--49401265	3	8.7	3	100	0	52	0	30	0	69	0.89
49403307--49403353	25	1.9	24	86	4	67	51	10	19	19	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189