genome.fa.s20.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  32  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9991574--9991647	37	2.0	38	86	7	107	36	43	1	18	1.59
9991898--9991931	15	2.3	15	89	0	50	44	35	0	20	1.52
9992413--9992571	41	3.8	42	74	4	117	33	24	23	17	1.96
9992473--9992572	42	2.4	41	78	3	101	37	24	24	15	1.93
9992545--9992589	18	2.6	18	89	3	65	40	28	17	13	1.88
9992512--9992630	59	2.0	60	90	1	186	36	27	21	13	1.91
9992562--9992662	41	2.4	41	96	1	184	34	29	21	13	1.92
9992717--9992843	40	3.2	39	76	5	112	18	25	21	35	1.95
9993629--9993736	49	2.2	49	85	11	143	8	21	7	62	1.47
9993690--9993788	43	2.3	43	84	6	130	9	24	6	60	1.49
9995116--9995151	18	1.9	19	88	5	56	36	0	2	61	1.11
9995157--9995198	15	2.9	14	79	13	50	28	4	4	61	1.36
9995930--9995954	3	8.3	3	100	0	50	0	32	0	68	0.90
9996493--9996517	12	2.1	12	100	0	50	16	8	32	44	1.76
9999801--9999851	24	2.1	24	96	0	93	39	23	15	21	1.92
10004068--10004201	58	2.3	58	84	1	178	23	20	17	38	1.94
10009832--10010074	90	2.7	90	93	0	396	35	15	23	25	1.94
10023967--10023997	9	3.4	9	90	0	53	25	12	22	38	1.90
10024051--10024078	9	3.1	9	100	0	56	46	10	10	32	1.73
10028334--10028368	18	2.0	17	88	5	52	77	0	20	2	0.90
10031429--10031675	129	1.9	129	87	0	359	26	33	17	22	1.96
10031429--10031677	43	5.8	43	84	0	309	26	32	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10034365--10034395	10	3.1	10	95	0	53	51	12	19	16	1.76
10036847--10036893	24	1.9	24	83	12	60	40	8	4	46	1.54
10037852--10037928	14	5.5	14	78	3	84	32	40	0	27	1.57
10037853--10037933	42	1.9	43	87	2	119	35	37	0	27	1.57
10037874--10037953	35	2.3	36	81	12	87	38	36	0	25	1.56
10038296--10038617	41	7.8	41	87	2	374	28	24	22	24	1.99
10038296--10038590	83	3.6	82	85	1	383	28	25	22	23	1.99
10042126--10042184	31	1.9	31	82	6	75	57	0	3	38	1.15
10042310--10042402	47	2.0	47	100	0	186	32	23	12	31	1.92
10044333--10045310	438	2.3	428	86	7	1363	30	15	13	40	1.85
10058911--10058950	19	2.2	18	86	4	53	50	10	5	35	1.58
10059652--10059750	33	3.0	33	78	0	90	15	28	10	46	1.78
10064288--10064329	11	3.6	11	81	12	57	59	4	0	35	1.19
10065624--10065675	19	2.7	19	87	3	68	67	1	3	26	1.18
10076641--10077437	108	7.5	107	87	6	1079	38	14	16	30	1.88
10076596--10077437	215	4.0	212	86	6	1119	38	14	16	30	1.89
10077548--10077892	110	3.1	108	88	7	507	27	14	14	42	1.85
10082903--10082935	2	16.5	2	100	0	66	51	48	0	0	1.00
10087644--10087712	31	2.3	31	92	2	113	30	7	15	46	1.73
10094535--10094665	50	2.6	50	90	4	194	26	19	34	19	1.96
10098528--10098682	45	3.5	44	78	9	152	26	15	21	36	1.93
10098521--10098720	45	4.5	45	76	9	149	25	14	26	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10101407--10101463	28	2.0	28	96	0	105	19	24	3	52	1.61
10103714--10103743	4	7.5	4	92	0	51	70	3	26	0	1.03
10106613--10106657	23	2.0	21	83	8	54	24	11	6	57	1.57
10107443--10107502	30	2.0	30	93	0	102	26	3	13	56	1.52
10109497--10109539	11	4.0	11	81	6	52	30	0	0	69	0.88
10112295--10112359	30	2.2	31	88	5	98	61	1	0	36	1.05
10112292--10112333	23	1.9	21	90	9	66	59	0	0	40	0.97
10112291--10112341	22	2.4	21	80	6	59	60	0	0	39	0.97
10122927--10123391	237	2.0	237	91	0	750	32	27	12	27	1.93
10123581--10123648	17	4.0	17	74	12	68	48	20	4	26	1.68
10123571--10123641	34	2.1	34	84	5	90	46	19	7	26	1.75
10125804--10125842	20	2.0	20	89	0	60	56	15	12	15	1.68
10126429--10126463	17	2.0	18	94	5	63	14	45	28	11	1.79
10127294--10127324	7	4.4	7	100	0	62	58	0	41	0	0.98
10127321--10127350	6	4.8	6	92	8	51	83	0	16	0	0.65
10127321--10127350	13	2.4	13	94	5	53	83	0	16	0	0.65
10132783--10132817	18	2.0	17	94	5	61	40	2	28	28	1.71
10133967--10134120	51	3.0	51	99	0	299	44	17	7	29	1.77
10134071--10134176	33	3.2	34	83	10	105	42	16	8	33	1.78
10134965--10135131	81	2.1	81	100	0	334	33	16	21	28	1.95
10137311--10137376	27	2.6	24	76	11	62	48	1	1	48	1.20
10137556--10137590	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10137556--10137610	15	3.4	16	80	16	53	47	0	1	50	1.11
10137350--10137607	119	2.2	116	90	4	403	45	0	5	48	1.31
10137544--10137859	156	2.0	157	95	0	562	48	5	2	43	1.40
10137712--10137746	18	2.0	17	88	5	52	45	0	0	54	0.99
10137911--10138001	45	2.0	45	85	2	121	37	28	6	27	1.82
10137982--10138033	16	3.2	16	97	0	95	38	34	0	26	1.57
10140654--10140726	35	2.1	35	94	0	128	36	19	15	28	1.92
10154166--10154198	17	1.9	17	100	0	66	24	27	6	42	1.78
10157731--10157780	17	2.9	17	90	0	82	26	26	6	42	1.78
10158722--10158749	3	9.3	3	100	0	56	32	0	0	67	0.91
10163200--10163247	24	2.1	23	85	11	64	54	0	14	31	1.41
10163730--10163885	41	3.8	41	89	6	235	28	20	22	28	1.98
10164100--10164197	33	2.9	33	84	7	108	30	10	22	36	1.87
10170821--10170873	24	2.3	23	84	12	65	52	0	15	32	1.42
10171351--10171506	41	3.8	41	89	6	235	28	20	22	28	1.98
10171721--10171818	33	2.9	33	84	7	108	30	10	22	36	1.87
10180337--10180705	42	8.7	43	70	15	182	26	23	20	29	1.99
10180414--10180788	163	2.2	168	87	7	534	26	23	18	30	1.98
10180645--10181016	115	3.2	116	90	7	548	27	19	19	32	1.97
10193777--10193812	3	12.0	3	87	0	54	63	2	2	30	1.22
10201402--10201442	21	1.9	22	90	5	66	39	12	9	39	1.76
10211403--10211470	31	2.2	31	83	0	91	42	19	8	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10213973--10214009	14	2.6	14	100	0	74	59	5	8	27	1.48
10216591--10216618	14	2.0	14	100	0	56	42	28	7	21	1.79
10228169--10228251	41	2.0	41	95	0	148	48	9	9	32	1.69
10230511--10230558	23	2.0	23	88	4	69	66	0	2	31	1.03
10230523--10230584	23	2.8	22	83	9	65	62	0	1	35	1.05
10232610--10232668	22	2.9	19	69	13	55	5	25	3	66	1.28
10245828--10245870	22	2.0	22	85	0	59	18	0	16	65	1.28
10246342--10246390	25	2.0	25	84	8	64	32	14	20	32	1.92
10256007--10256031	12	2.1	12	100	0	50	32	28	0	40	1.57
10256201--10256225	12	2.1	12	100	0	50	32	28	0	40	1.57
10255997--10256380	194	2.0	195	98	0	752	34	20	10	34	1.87
10260104--10260201	35	2.8	36	87	3	144	41	15	13	29	1.85
10262362--10262625	42	6.2	42	83	6	295	31	22	20	25	1.98
10262383--10262625	126	1.9	125	85	5	330	30	22	20	26	1.98
10263042--10263081	21	1.9	21	100	0	80	0	45	20	35	1.51
10263045--10263113	33	2.1	33	97	0	129	1	40	21	36	1.63
10263045--10263093	12	4.3	12	75	15	59	0	42	20	36	1.52
10263078--10263146	21	3.3	21	89	0	93	5	39	18	36	1.75
10263600--10263893	146	2.0	146	97	0	561	32	15	14	36	1.89
10267972--10268328	9	39.7	9	77	7	287	35	2	14	47	1.58
10267972--10268330	54	6.3	54	79	13	339	35	2	14	47	1.57
10271423--10271461	21	1.9	20	89	5	60	43	35	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10271528--10271739	115	1.8	115	83	4	284	27	23	18	30	1.98
10276347--10276372	4	6.5	4	100	0	52	26	0	23	50	1.50
10285579--10285636	25	2.4	24	79	2	62	58	6	1	32	1.35
10286720--10286753	16	2.1	16	88	0	50	38	0	5	55	1.24
10288292--10288334	11	3.8	11	82	17	61	32	2	2	62	1.20
10288295--10288338	23	1.9	23	95	0	79	34	2	4	59	1.30
10291113--10291160	23	2.1	25	85	14	68	18	2	12	66	1.33
10292229--10292271	18	2.4	19	78	21	56	25	4	6	62	1.40
10300392--10300425	4	8.5	4	100	0	68	50	23	0	26	1.50
10300595--10300632	20	1.9	20	94	0	67	52	15	10	21	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189