genome.fa.s20.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  40  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12052600--12052654	21	2.5	23	79	8	69	41	1	0	56	1.10
12052625--12052665	19	2.2	19	86	8	57	46	0	2	51	1.14
12052744--12052811	23	2.9	23	78	8	75	50	10	1	38	1.46
12052758--12052940	82	2.2	83	93	1	305	49	15	1	33	1.52
12052699--12052928	49	5.0	47	69	23	179	49	16	0	33	1.49
12052887--12053009	9	13.7	9	68	24	57	44	18	0	35	1.56
12052899--12052960	11	5.9	11	73	19	53	43	17	1	37	1.59
12052899--12052979	31	2.5	32	78	10	92	44	17	1	37	1.57
12052758--12053010	82	3.1	82	85	6	275	47	15	0	35	1.52
12052936--12053009	26	3.0	25	86	11	109	43	16	0	40	1.48
12052820--12053015	26	8.3	24	68	21	105	46	15	0	36	1.50
12053383--12053453	21	3.4	21	90	0	106	32	19	45	2	1.65
12053770--12053979	42	4.8	42	81	12	228	35	20	21	22	1.96
12053864--12053961	49	2.0	49	92	4	162	37	19	20	22	1.94
12054101--12054144	22	2.0	22	90	0	70	50	27	13	9	1.72
12055332--12055369	15	2.5	15	100	0	76	26	18	21	34	1.96
12056267--12056409	72	2.0	72	86	1	198	44	10	9	35	1.71
12059349--12059420	32	2.3	32	92	2	119	41	0	20	37	1.53
12063741--12063793	21	2.5	21	93	0	88	30	37	9	22	1.86
12064313--12064576	130	2.0	130	94	0	465	33	14	17	34	1.90
12066629--12066750	30	3.9	30	73	16	93	28	14	24	31	1.95
12082098--12082157	29	2.1	29	84	6	77	61	10	3	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12098830--12099180	125	2.8	124	91	1	560	29	15	21	33	1.95
12102640--12102879	116	2.1	116	95	0	426	43	10	7	39	1.66
12102909--12102988	21	3.7	21	71	15	72	27	0	30	42	1.56
12102914--12103131	45	5.2	44	69	21	169	30	0	23	45	1.53
12102932--12103517	23	23.6	23	70	24	271	30	0	24	45	1.55
12102979--12103497	29	17.3	29	71	22	335	30	0	24	45	1.55
12102983--12103066	28	2.9	29	83	3	107	29	0	23	46	1.53
12103059--12103113	20	2.6	22	80	11	69	30	0	21	47	1.51
12103429--12103497	28	2.4	29	87	7	104	26	1	28	43	1.63
12103513--12103625	25	4.7	25	73	18	114	44	13	0	41	1.49
12103513--12103669	70	2.3	69	95	1	278	45	12	0	40	1.47
12103593--12103679	44	2.0	45	88	6	133	49	11	0	39	1.39
12104096--12104130	18	1.9	18	94	0	61	34	8	31	25	1.86
12104780--12104804	7	3.6	7	100	0	50	60	12	0	28	1.32
12105979--12106053	22	3.4	22	87	10	100	44	0	32	24	1.54
12105995--12106052	11	5.2	11	74	17	57	46	0	32	20	1.51
12107734--12107758	6	4.2	6	100	0	50	48	0	0	52	1.00
12107758--12107822	30	2.1	31	83	8	80	40	0	1	58	1.07
12107776--12107833	20	2.9	20	75	10	64	36	0	1	62	1.06
12107804--12107845	19	2.2	19	83	8	50	33	0	2	64	1.07
12115034--12115059	11	2.4	11	100	0	52	26	0	0	73	0.84
12116411--12116913	109	4.6	110	91	1	753	34	20	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12116957--12116996	20	2.1	18	86	13	53	57	2	15	25	1.50
12117374--12117441	24	2.8	24	76	14	68	52	1	10	35	1.44
12117408--12117453	22	2.1	22	87	0	65	58	2	4	34	1.30
12117463--12117495	3	11.0	3	93	0	57	63	0	3	33	1.10
12128637--12128778	72	2.0	72	90	0	221	28	16	18	37	1.92
12130234--12130320	43	2.0	43	97	0	165	54	9	12	24	1.67
12134488--12134518	15	2.1	15	100	0	62	32	0	29	38	1.57
12135151--12135191	21	2.1	19	86	13	57	36	4	0	58	1.20
12145911--12145940	16	1.9	16	93	6	53	33	0	3	63	1.11
12151882--12151906	13	1.9	13	100	0	50	8	0	16	76	1.02
12152535--12152602	31	2.2	31	82	12	86	39	1	7	51	1.39
12153700--12153738	20	2.0	20	85	10	53	5	15	5	74	1.17
12157200--12157251	24	2.2	24	89	0	77	55	9	1	32	1.43
12159169--12159220	24	2.2	24	89	0	77	55	9	1	32	1.43
12163490--12163555	31	2.2	31	84	13	84	25	1	6	66	1.23
12163752--12163796	23	1.9	23	90	4	72	60	8	4	26	1.46
12167178--12167549	46	8.6	45	82	12	444	34	14	22	28	1.94
12167261--12167413	36	4.0	36	75	15	153	37	15	18	28	1.91
12167215--12167548	82	4.0	81	85	6	438	34	15	21	28	1.94
12167178--12167548	128	2.9	126	79	13	438	34	14	22	28	1.94
12172354--12172400	17	2.8	17	87	6	60	46	4	0	48	1.21
12172314--12172523	92	2.3	92	85	5	273	46	3	3	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12172451--12172498	26	1.9	25	84	16	64	45	0	2	52	1.12
12172576--12172787	66	3.4	63	70	21	203	41	3	5	49	1.44
12172539--12172831	120	2.4	120	93	3	493	42	3	4	49	1.38
12172673--12172825	15	10.1	15	66	21	54	43	1	3	50	1.31
12172793--12172834	15	2.7	16	82	14	52	45	0	2	52	1.13
12172539--12172823	59	4.8	57	69	20	199	43	3	4	49	1.38
12172960--12173069	45	2.6	43	78	8	111	32	28	6	32	1.82
12173050--12173085	16	2.2	16	95	0	63	36	36	2	25	1.70
12174739--12174854	36	3.2	35	82	4	135	31	49	5	14	1.65
12174837--12174874	3	12.7	3	100	0	76	31	68	0	0	0.90
12174756--12174852	36	2.7	37	87	6	137	29	49	6	14	1.67
12181234--12181272	14	2.8	14	84	0	51	33	7	15	43	1.75
12181256--12181294	20	2.0	20	89	0	60	28	10	15	46	1.78
12181242--12181307	34	1.9	35	90	3	107	31	9	15	43	1.77
12184013--12184090	39	1.9	39	82	10	95	51	23	11	14	1.74
12187315--12187356	22	2.0	22	90	4	68	45	7	9	38	1.64
12187344--12187444	33	3.1	30	71	18	78	50	1	0	46	1.19
12191697--12191752	15	3.7	15	77	11	53	67	5	1	25	1.21
12191722--12191761	21	1.9	21	84	0	53	75	2	0	22	0.93
12195897--12195981	42	2.0	42	93	0	143	25	16	16	41	1.89
12199822--12199893	8	8.6	8	78	17	67	84	0	12	2	0.72
12199820--12199893	10	7.5	10	77	13	82	85	0	12	2	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199829--12199893	19	3.4	19	82	6	78	84	0	13	1	0.69
12199831--12199893	24	2.6	24	82	5	83	85	0	12	1	0.66
12199820--12199893	29	2.6	27	87	12	103	85	0	12	2	0.71
12201271--12201405	45	3.0	45	65	8	105	32	18	22	25	1.97
12201416--12201577	43	3.7	43	70	8	121	30	24	23	21	1.99
12201413--12201622	87	2.4	87	91	0	348	30	22	23	23	1.99
12201459--12201621	44	3.7	44	68	8	116	30	21	24	23	1.99
12201675--12201852	43	4.1	44	62	17	95	33	19	20	26	1.96
12201620--12201911	129	2.3	129	90	0	467	32	20	20	26	1.97
12201884--12201933	22	2.2	22	96	3	91	20	26	20	34	1.96
12203891--12203956	26	2.4	28	78	12	75	39	7	4	48	1.52
12210453--12210587	40	3.4	41	77	9	118	37	22	22	17	1.94
12210627--12210905	41	6.8	41	84	4	303	16	24	25	34	1.95
12211348--12211379	16	1.9	17	93	6	57	37	0	21	40	1.54
12212760--12212805	23	2.0	23	87	12	67	19	0	52	28	1.47
12215736--12215782	23	2.0	23	95	0	85	44	21	2	31	1.64
12215733--12215785	16	3.3	16	76	15	56	43	22	1	32	1.64
12215771--12216364	34	18.2	33	67	17	187	45	11	2	41	1.52
12215849--12216045	98	2.0	98	98	0	385	45	9	1	44	1.43
12215950--12216177	65	3.7	59	89	6	273	45	9	3	41	1.54
12215871--12216016	25	5.9	25	65	16	63	43	10	1	45	1.46
12215989--12216156	22	7.9	22	65	25	76	46	11	2	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12216016--12216158	9	15.8	9	68	20	50	47	11	3	37	1.56
12216182--12216219	7	5.1	7	87	12	58	44	26	0	28	1.54
12216177--12216237	16	3.8	16	83	16	90	44	24	0	31	1.54
12216177--12216568	9	46.3	9	67	19	118	44	16	1	37	1.58
12216177--12216237	23	2.5	24	89	10	97	44	24	0	31	1.54
12215896--12216396	175	3.0	170	81	11	497	45	12	1	39	1.53
12216352--12216498	16	8.8	16	71	14	93	42	19	2	36	1.63
12216352--12216478	25	5.1	25	66	17	59	41	18	1	38	1.60
12216536--12216568	16	2.1	16	94	0	57	51	18	0	30	1.46
12219788--12219953	66	2.5	65	84	6	210	40	19	27	12	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189