genome.fa.s20.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  128  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36704336--36704366	11	2.7	12	90	10	55	25	9	6	58	1.54
36709401--36709501	44	2.3	44	84	3	123	28	17	23	29	1.97
36709737--36710248	44	11.7	42	68	13	157	28	20	24	26	1.99
36709072--36710688	218	7.4	218	88	2	2052	29	19	24	26	1.99
36717151--36717196	20	2.3	21	82	14	62	54	0	2	43	1.12
36717165--36717203	19	2.0	20	90	5	62	53	2	5	38	1.37
36719282--36719352	29	2.4	29	80	15	83	33	1	2	61	1.19
36719294--36719357	28	2.3	29	81	5	78	34	3	3	59	1.29
36719531--36719720	91	2.1	89	83	1	227	35	8	18	37	1.82
36719580--36719768	93	2.1	90	79	10	206	34	8	20	35	1.84
36724443--36724485	18	2.4	18	96	0	77	13	44	2	39	1.57
36727555--36727579	12	2.1	12	100	0	50	40	0	0	60	0.97
36729080--36729113	17	2.0	17	94	0	59	61	0	2	35	1.11
36729341--36729402	28	2.2	29	80	8	74	64	1	3	30	1.19
36730829--36731104	129	2.1	128	88	3	403	23	19	21	35	1.96
36730890--36731088	40	4.7	41	72	14	163	25	21	22	31	1.98
36731100--36732258	100	11.8	100	86	3	1462	25	22	22	29	1.99
36731100--36732258	192	5.9	196	89	3	1525	25	22	22	29	1.99
36731130--36732258	50	22.9	50	67	7	534	25	22	22	29	1.99
36733609--36733664	17	3.1	17	79	18	60	0	3	16	80	0.85
36738207--36738428	40	5.7	40	87	8	296	24	22	27	25	1.99
36738207--36738461	79	3.3	78	83	8	295	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36746187--36746411	40	5.7	40	87	5	305	24	22	27	25	2.00
36746187--36746444	119	2.2	119	81	6	292	25	21	26	25	2.00
36748735--36748768	17	2.0	17	94	0	59	61	0	2	35	1.11
36748978--36749056	26	3.1	25	78	5	61	60	3	5	30	1.36
36752437--36752622	102	1.8	102	87	4	277	30	20	9	39	1.85
36752357--36752651	102	2.9	100	79	8	274	31	19	9	39	1.83
36758598--36758654	29	2.0	29	85	0	78	31	28	15	24	1.96
36759827--36759959	39	3.4	39	80	8	130	42	13	9	33	1.77
36763854--36763892	21	1.9	21	89	5	62	58	0	0	41	0.98
36763853--36763898	20	2.3	20	81	7	58	63	0	0	36	0.95
36771543--36771583	19	2.2	19	86	0	55	19	21	17	41	1.90
36777756--36777955	37	5.5	37	75	9	169	21	12	27	39	1.89
36780055--36780175	56	2.1	58	84	3	156	44	5	23	26	1.75
36780161--36780191	6	5.2	6	92	0	53	70	0	12	16	1.16
36781641--36781672	14	2.4	14	94	5	57	25	0	6	68	1.12
36784210--36784248	12	3.2	12	85	0	51	17	20	5	56	1.60
36784447--36784690	50	4.8	50	82	5	256	25	28	20	26	1.99
36799177--36799466	50	5.9	50	81	5	277	29	21	27	22	1.99
36799178--36799410	98	2.4	99	86	2	299	28	21	28	21	1.99
36804414--36804452	8	5.0	8	81	6	53	12	12	0	74	1.08
36804414--36804452	15	2.5	15	91	4	60	12	12	0	74	1.08
36804482--36804515	6	5.7	6	89	0	50	14	0	11	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36809484--36809532	20	2.5	20	83	3	55	63	6	2	28	1.30
36810403--36810435	7	4.7	7	89	10	50	0	15	0	84	0.61
36810403--36810436	15	2.4	14	85	5	50	0	14	0	85	0.60
36817374--36817405	4	8.5	4	86	13	50	75	0	0	25	0.81
36817374--36817405	11	2.9	11	100	0	64	75	0	0	25	0.81
36821584--36821653	27	2.5	28	88	6	99	30	18	25	25	1.98
36825714--36825970	41	6.3	41	89	0	390	18	21	29	30	1.97
36831198--36831425	43	5.3	43	86	2	278	18	17	33	30	1.94
36834070--36834111	18	2.4	17	84	15	50	71	0	4	23	1.05
36837185--36837243	24	2.5	24	91	0	91	44	11	22	22	1.85
36839523--36839560	20	2.0	20	94	5	69	31	31	5	31	1.80
36841265--36841312	24	2.0	25	84	12	64	25	10	10	54	1.66
36843096--36843285	95	2.0	97	91	2	312	36	14	17	31	1.90
36843754--36843806	24	2.2	24	100	0	106	24	32	7	35	1.84
36847808--36847889	43	1.9	43	85	5	112	36	19	17	26	1.94
36847892--36847996	42	2.5	42	80	1	120	34	20	20	24	1.96
36849543--36849595	24	2.2	24	96	0	97	33	3	24	37	1.74
36851363--36851406	22	2.0	23	86	4	63	34	9	2	54	1.44
36853417--36853466	25	2.0	25	88	7	75	42	4	0	54	1.19
36867179--36867314	41	3.2	41	78	9	123	26	17	25	30	1.97
36885737--36885789	27	2.0	27	84	0	70	32	16	28	22	1.96
36894484--36894516	16	2.1	16	94	0	57	69	3	3	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36904139--36904189	23	2.2	24	82	10	61	35	5	1	56	1.35
36905040--36905085	24	1.9	24	86	8	67	39	6	15	39	1.73
36906151--36906301	41	3.7	41	86	1	214	32	20	23	23	1.98
36906275--36906324	26	1.9	26	91	0	82	18	24	34	24	1.96
36921788--36921841	26	2.2	24	80	9	63	48	12	16	22	1.80
36922735--36922797	15	3.9	16	75	20	69	42	0	1	55	1.09
36922719--36922804	32	2.7	33	80	18	94	41	0	1	56	1.06
36924788--36924909	34	3.6	36	79	8	139	44	14	7	33	1.73
36931646--36931724	41	1.9	42	86	2	115	31	25	16	26	1.96
36931846--36931945	34	2.8	36	87	6	150	44	15	7	34	1.73
36931867--36931980	34	3.6	30	77	10	93	45	13	7	34	1.70
36934267--36934505	41	5.8	41	81	0	280	37	24	20	18	1.94
36936190--36936224	17	2.1	17	100	0	70	57	5	5	31	1.46
36948894--36949008	45	2.5	46	80	5	128	44	15	18	21	1.87
36954731--36954818	23	3.8	23	80	4	88	29	10	19	40	1.84
36954784--36954829	23	2.0	23	83	8	58	39	10	17	32	1.84
36956913--36957173	43	6.1	43	80	0	297	29	26	17	25	1.97
36957577--36957667	43	2.1	43	89	2	139	46	9	9	34	1.70
36961841--36962041	7	27.7	7	71	12	75	41	35	1	20	1.62
36961842--36961962	50	2.4	50	95	0	224	42	36	0	20	1.58
36961947--36961993	24	1.9	25	91	4	78	34	44	2	19	1.62
36962007--36962035	15	1.9	15	100	0	58	44	34	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36961988--36962041	22	2.5	21	78	3	54	46	29	1	22	1.62
36962527--36962684	41	3.9	41	90	0	235	28	31	18	21	1.97
36968573--36968719	39	3.7	39	83	10	192	31	2	0	65	1.07
36968663--36968744	11	8.1	11	71	22	63	36	1	0	62	1.03
36968695--36968738	21	2.2	21	88	11	67	29	0	0	70	0.88
36968657--36968738	20	4.2	19	70	13	67	31	1	0	67	0.99
36972192--36972326	71	1.9	71	93	0	234	32	20	18	28	1.96
36972763--36972825	26	2.4	26	81	0	72	50	1	6	41	1.37
36972783--36972836	26	2.1	26	82	6	65	46	3	9	40	1.54
36972867--36972983	56	2.0	59	83	4	150	49	4	11	34	1.59
36974739--36974860	44	2.8	44	83	2	165	27	26	20	26	1.99
36975202--36975320	51	2.4	51	81	4	134	27	22	15	34	1.94
36975294--36978621	50	66.6	50	75	2	2692	27	19	20	32	1.97
36975234--36978621	100	33.9	100	85	1	3091	27	19	20	32	1.97
36980028--36980066	5	7.8	5	83	11	53	0	17	0	82	0.68
36980025--36980082	13	4.4	13	83	16	66	1	13	0	84	0.70
36980035--36980078	9	4.9	9	86	10	54	2	15	0	81	0.78
36980028--36980081	25	2.2	25	90	6	83	1	14	0	83	0.73
36985239--36985380	71	2.0	71	92	0	239	35	19	18	27	1.95
36985815--36985877	26	2.4	26	81	0	72	50	1	6	41	1.37
36986147--36986199	6	8.3	6	86	10	63	79	1	0	18	0.83
36986147--36986209	12	5.5	11	75	19	58	77	3	0	19	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36986151--36986206	6	8.1	7	84	7	55	78	3	0	17	0.89
36986148--36986210	15	4.2	15	86	6	83	76	3	0	20	0.93
37001658--37001691	17	2.1	17	88	5	52	50	0	17	32	1.47
37002090--37002187	42	2.3	42	91	0	151	36	10	26	26	1.88
37005393--37005436	22	2.1	20	87	8	61	54	4	2	38	1.33
37009169--37009207	14	2.6	15	88	8	53	48	2	0	48	1.15
37009758--37009805	20	2.4	20	100	0	96	52	8	4	35	1.51
37010364--37010390	4	6.8	4	100	0	54	48	0	0	51	1.00
37011846--37011912	32	2.1	32	97	0	125	35	11	11	40	1.79
37013844--37013895	21	2.4	22	80	9	61	26	1	7	63	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189