genome.fa.s20.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  159  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47838051--47838117	33	2.0	33	100	0	134	34	14	11	38	1.84
47839434--47839475	9	4.5	10	80	14	54	71	11	9	7	1.31
47844889--47845044	41	3.8	41	89	6	226	28	21	22	27	1.99
47845261--47845358	33	2.9	33	84	7	108	30	10	22	36	1.87
47852527--47852723	41	4.8	41	91	5	308	28	21	22	27	1.99
47852942--47853015	33	2.4	32	81	14	95	31	9	24	35	1.87
47852952--47853035	33	2.4	36	86	7	111	28	13	25	33	1.93
47857787--47857813	13	2.1	13	100	0	54	44	22	0	33	1.53
47871271--47871349	41	1.9	41	89	0	122	25	17	17	39	1.92
47871704--47871738	15	2.3	15	90	0	52	5	14	11	68	1.37
47874319--47874408	19	4.9	18	67	14	58	44	2	3	50	1.31
47876532--47876564	14	2.4	14	95	5	59	18	36	27	18	1.94
47876533--47876573	14	3.1	13	89	10	57	17	36	29	17	1.92
47878272--47878386	43	2.6	44	74	9	119	23	17	28	30	1.97
47880521--47880545	13	1.9	13	100	0	50	24	24	36	16	1.94
47880970--47881065	38	2.5	38	79	1	102	32	15	18	33	1.93
47886893--47887104	41	5.1	41	94	0	343	27	20	27	24	1.99
47890786--47890853	3	23.0	3	80	8	77	63	2	1	32	1.18
47892534--47892876	44	7.8	44	68	13	204	28	25	17	28	1.97
47892474--47893392	132	7.1	132	90	2	1053	30	23	17	28	1.97
47892518--47892876	88	4.1	87	67	13	239	28	25	18	28	1.98
47894645--47894754	6	18.3	6	78	17	97	0	18	0	80	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47894645--47894754	17	6.5	16	79	20	109	0	18	0	80	0.76
47894648--47894755	16	6.9	15	72	8	83	0	17	0	81	0.74
47898336--47898431	38	2.5	38	82	1	102	34	14	16	34	1.90
47899187--47899311	46	2.7	47	81	1	144	28	13	28	30	1.94
47903913--47903947	7	5.0	7	100	0	70	42	0	0	57	0.99
47906847--47906967	58	2.0	60	82	6	149	31	12	9	47	1.72
47907604--47907654	25	2.0	25	84	7	66	64	15	1	17	1.38
47908001--47908034	17	2.0	17	88	11	52	47	8	14	29	1.75
47908674--47908700	14	1.9	14	100	0	54	25	0	7	66	1.17
47909320--47909364	23	2.0	23	87	8	67	37	0	0	62	0.96
47909320--47909359	10	3.9	10	80	6	53	32	0	0	67	0.91
47918967--47919032	31	2.1	31	100	0	132	60	12	0	27	1.32
47921345--47921395	20	2.6	20	81	3	68	54	1	0	43	1.11
47921621--47921684	13	4.9	13	84	0	83	31	9	23	35	1.87
47922547--47922616	34	2.0	35	91	2	115	45	14	4	35	1.64
47928557--47928587	3	10.3	3	100	0	62	32	0	0	67	0.91
47933431--47934301	89	9.8	89	80	1	841	28	23	23	25	2.00
47933431--47934321	267	3.3	266	79	2	942	28	23	23	24	1.99
47934353--47940324	100	59.8	100	82	1	6589	33	21	20	25	1.97
47934353--47940316	399	14.9	398	83	2	6364	33	21	20	25	1.97
47934353--47940317	499	12.0	499	84	1	6606	33	21	20	25	1.97
47939924--47940816	448	2.0	448	81	2	1058	32	21	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47940294--47947351	499	14.1	499	79	2	5562	32	20	21	25	1.97
47940294--47947384	599	11.8	599	77	3	5494	32	20	21	25	1.97
47940294--47947384	299	23.7	299	81	2	5563	32	20	21	25	1.97
47934353--47946609	349	35.1	349	69	4	5120	32	21	20	25	1.97
47934353--47945753	648	17.6	644	69	5	3371	32	21	20	25	1.97
47940294--47947384	399	17.8	397	79	3	5334	32	20	21	25	1.97
47934702--47947308	449	28.1	448	70	3	4810	32	20	20	25	1.97
47940294--47947384	100	71.1	100	82	2	5550	32	20	21	25	1.97
47949133--47949168	3	11.7	3	94	5	63	33	0	0	66	0.92
47949167--47949252	3	28.7	3	100	0	172	33	32	0	33	1.58
47956040--47956083	22	2.0	22	91	4	72	20	6	0	72	1.07
47956037--47956087	18	2.8	18	85	11	68	21	5	0	72	1.05
47956031--47956098	21	3.3	21	82	11	79	23	5	0	70	1.09
47957120--47957164	23	2.0	23	81	0	54	77	2	2	17	0.97
47970657--47971478	44	18.7	44	71	9	385	27	22	20	30	1.98
47970657--47971478	90	9.3	88	75	8	685	27	22	20	30	1.98
47970586--47971481	175	5.1	174	86	3	1192	27	21	20	30	1.98
47970586--47971481	349	2.5	348	88	3	1255	27	21	20	30	1.98
47973692--47973754	6	10.7	6	78	14	51	15	4	9	69	1.32
47973646--47973729	22	3.7	22	70	14	64	9	9	4	76	1.15
47981323--47981349	3	9.0	3	100	0	54	33	0	0	66	0.92
47986330--47986383	19	2.8	19	77	8	56	16	11	5	66	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47989347--47989415	26	2.6	26	88	6	95	26	23	18	31	1.97
47992409--47992491	24	3.4	25	77	9	82	19	27	21	31	1.97
47992531--47992608	25	3.1	26	76	9	72	19	26	20	33	1.96
47992538--47992608	26	2.8	25	80	6	72	19	26	22	30	1.98
47992989--47993035	23	2.0	23	91	0	76	38	21	4	36	1.73
47996323--47997186	129	6.7	129	91	0	1329	25	23	19	32	1.97
47997149--47997444	44	6.7	44	89	0	414	23	25	21	29	1.99
47998706--47998746	21	1.9	22	85	5	57	14	12	0	73	1.11
47998707--47998738	14	2.2	15	94	5	57	12	9	0	78	0.97
47999592--47999634	21	2.1	21	83	8	54	2	18	2	76	1.00
48005247--48005285	15	2.8	14	88	7	53	82	2	10	5	0.93
48005255--48005302	21	2.2	22	81	3	62	72	6	10	10	1.26
48005253--48005297	21	2.0	22	87	12	65	75	6	11	6	1.18
48013591--48013639	20	2.7	18	77	22	57	51	4	2	42	1.32
48013591--48013687	37	2.6	38	77	18	98	51	4	3	41	1.36
48016079--48016195	61	1.9	61	84	5	155	41	9	12	35	1.76
48016157--48016208	25	2.1	25	85	7	70	53	9	5	30	1.57
48022684--48022871	96	2.0	96	83	0	241	32	17	14	36	1.89
48027482--48027558	33	2.3	33	80	14	79	44	1	7	46	1.40
48032640--48032670	12	2.6	12	89	0	53	32	32	0	35	1.58
48035960--48036286	109	3.0	107	89	3	478	35	16	15	32	1.91
48036335--48036365	15	2.1	15	93	0	53	64	6	9	19	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48036746--48036810	18	3.6	18	77	6	60	60	1	3	35	1.22
48036776--48036810	17	2.0	18	88	5	54	68	0	0	31	0.90
48036890--48036919	12	2.5	12	94	0	51	63	6	0	30	1.20
48037861--48037911	26	2.0	26	84	7	68	13	13	54	17	1.70
48038337--48039039	263	2.7	264	88	0	1025	28	23	17	31	1.97
48038339--48039040	132	5.3	131	89	1	983	28	23	17	30	1.97
48039035--48039505	46	10.2	46	93	0	789	31	26	16	25	1.96
48040728--48040763	6	6.2	6	87	6	56	0	22	0	77	0.76
48040728--48040761	11	3.0	11	91	4	50	0	20	0	79	0.73
48040730--48040763	17	2.0	17	94	0	59	0	20	0	79	0.73
48041120--48041198	1	79.0	1	69	0	50	1	2	11	84	0.77
48041131--48041196	7	8.9	7	83	9	78	1	3	12	83	0.83
48041121--48041197	8	9.9	8	84	9	81	1	2	11	84	0.79
48041122--48041196	30	2.4	30	84	8	89	1	2	12	84	0.80
48044422--48044740	109	3.0	108	86	2	435	34	18	16	30	1.93
48044790--48044820	15	2.1	15	93	0	53	64	6	9	19	1.45
48045354--48045383	12	2.5	12	94	0	51	63	6	0	30	1.20
48047296--48047331	17	2.1	17	89	0	54	41	8	0	50	1.33
48050287--48050327	3	13.7	3	89	0	55	34	7	34	24	1.83
48050287--48050327	12	3.4	12	89	0	64	34	7	34	24	1.83
48055430--48055501	33	2.2	33	82	7	85	51	15	6	26	1.68
48055699--48055727	13	2.2	13	100	0	58	34	13	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48056058--48056118	4	14.2	4	80	13	50	63	0	6	29	1.19
48056130--48056182	17	2.9	17	71	15	52	73	0	9	16	1.08
48057707--48058136	44	9.6	44	75	8	357	29	18	16	34	1.93
48057707--48058132	96	4.8	86	80	5	278	30	18	16	34	1.93
48057967--48058177	96	2.2	96	99	0	413	32	16	15	35	1.91
48058226--48058421	44	4.3	44	70	17	112	29	20	17	33	1.95
48058297--48058454	51	3.2	51	75	10	184	29	17	19	33	1.95
48064230--48064274	19	2.3	21	75	17	53	44	6	20	28	1.76
48066575--48066635	29	2.1	29	84	0	77	72	0	9	18	1.11
48066615--48066691	38	2.1	36	82	4	91	68	0	7	23	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189