genome.fa.s20.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  150  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45430599--45430740	64	2.2	64	88	5	207	47	15	2	35	1.58
45430630--45430880	34	7.9	34	75	19	161	46	19	1	32	1.60
45430582--45430755	48	3.6	47	76	13	142	46	15	2	35	1.59
45430630--45430928	41	7.2	41	68	21	151	46	19	1	32	1.60
45430724--45430839	25	4.7	24	80	6	117	46	22	0	30	1.58
45430724--45430839	50	2.3	49	80	10	137	46	22	0	30	1.58
45430824--45430889	25	2.6	25	90	0	105	45	22	1	30	1.62
45430740--45430883	59	2.4	59	81	6	177	45	22	0	31	1.58
45430630--45430862	16	14.6	16	69	20	125	46	19	1	32	1.60
45435466--45435915	23	19.1	25	66	17	148	44	16	11	27	1.82
45435417--45435932	70	7.3	70	90	2	748	43	16	11	28	1.83
45436659--45436759	28	3.6	28	87	1	150	31	21	11	34	1.90
45439722--45439935	43	5.0	43	87	1	322	28	18	28	24	1.98
45439966--45440009	22	2.0	22	90	0	70	50	27	13	9	1.72
45440257--45440326	36	1.9	36	88	11	108	57	28	4	10	1.50
45442249--45442289	21	2.0	21	90	0	64	31	0	4	63	1.15
45449021--45449062	22	1.9	22	90	0	66	42	4	0	52	1.22
45457085--45457153	24	3.2	24	61	26	62	33	5	2	57	1.37
45459137--45459192	22	2.5	23	82	2	69	51	1	1	44	1.22
45459168--45459207	16	2.5	16	91	0	62	47	2	7	42	1.45
45459218--45459416	59	3.4	59	98	0	380	39	5	9	45	1.59
45459398--45459425	9	3.1	9	100	0	56	32	0	10	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45468197--45468404	99	2.1	99	95	0	371	12	15	39	31	1.85
45468445--45468492	8	6.0	8	90	0	60	33	0	66	0	0.92
45468453--45468491	12	3.2	12	92	0	69	30	0	69	0	0.89
45468457--45468492	4	9.0	4	93	0	63	27	0	72	0	0.85
45469707--45469814	34	3.3	33	78	15	118	27	0	22	49	1.56
45469842--45469953	33	3.3	33	81	6	125	41	1	16	40	1.58
45470030--45470296	126	2.1	125	86	4	367	37	17	16	28	1.92
45473515--45473555	21	2.0	21	95	0	73	0	14	53	31	1.41
45473793--45473835	18	2.4	18	92	0	68	41	9	27	20	1.83
45476499--45476552	20	2.7	20	82	0	63	25	25	0	48	1.52
45484644--45484673	14	2.2	13	94	5	51	46	0	6	46	1.29
45494079--45494127	25	2.0	25	83	0	62	26	4	26	42	1.73
45495155--45495199	15	3.0	15	100	0	90	20	20	13	46	1.83
45496322--45496435	24	4.8	24	73	12	83	25	22	20	31	1.98
45496392--45496438	23	2.1	22	84	11	60	25	19	17	38	1.92
45496523--45496628	42	2.5	42	86	3	142	36	22	15	25	1.93
45499538--45499579	20	2.0	21	90	4	68	19	4	4	71	1.22
45502283--45502319	17	2.1	18	90	5	58	45	8	5	40	1.56
45508810--45508846	14	2.5	14	91	8	56	59	0	40	0	0.97
45509015--45509092	22	3.8	20	80	8	86	33	0	11	55	1.36
45509041--45509097	19	2.9	19	86	2	78	33	0	14	52	1.41
45509142--45509333	27	7.8	25	76	18	199	32	1	12	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45509159--45509216	22	2.9	19	73	14	53	31	1	13	53	1.50
45509140--45509329	49	3.9	49	89	5	314	31	1	12	54	1.45
45509139--45509386	96	2.6	96	88	2	347	31	0	13	54	1.45
45509529--45509602	38	1.9	38	94	0	130	52	4	2	40	1.34
45509714--45509755	16	2.7	15	85	7	57	38	2	2	57	1.25
45513384--45513488	40	2.6	39	83	5	113	24	27	20	26	1.99
45513427--45513557	40	3.3	39	81	4	163	30	27	18	23	1.98
45513430--45513610	80	2.3	80	81	9	201	28	27	19	23	1.99
45517883--45517932	22	2.3	21	93	3	82	0	32	2	66	1.03
45517995--45518070	27	2.8	27	95	0	134	22	38	22	17	1.93
45518116--45518157	22	2.0	22	95	4	77	50	4	0	45	1.23
45518736--45518768	17	1.9	17	93	0	57	51	0	3	45	1.16
45519753--45519795	22	2.0	22	85	0	59	13	20	23	41	1.88
45519855--45520090	43	5.5	42	80	6	260	26	31	19	22	1.98
45519856--45520090	129	1.8	129	83	2	312	26	31	19	22	1.98
45519829--45520103	86	3.2	86	76	5	279	26	28	20	25	1.99
45520442--45520500	21	2.8	21	92	0	100	5	45	16	32	1.70
45522908--45523253	9	40.9	9	66	21	128	32	1	19	45	1.61
45522921--45523260	25	13.8	25	69	13	154	32	1	19	45	1.59
45522909--45523040	50	2.6	50	86	3	183	34	2	20	43	1.64
45523025--45523101	32	2.3	34	80	17	97	41	0	15	42	1.47
45523050--45523092	12	4.0	11	77	17	54	41	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523077--45523101	13	1.9	13	100	0	50	36	0	16	48	1.46
45523021--45523468	50	8.5	51	68	24	163	33	0	18	47	1.53
45523150--45523231	16	5.0	16	77	5	74	28	1	21	48	1.58
45523253--45523446	32	6.2	32	69	22	117	35	0	16	48	1.47
45523270--45523299	12	2.6	11	90	10	51	43	0	10	46	1.37
45522923--45523375	220	2.1	219	92	2	766	33	1	19	46	1.57
45523280--45523418	21	6.0	21	66	22	66	33	0	16	49	1.46
45523280--45523468	49	3.9	49	79	12	217	33	0	16	49	1.46
45523250--45523472	96	2.3	97	90	6	339	34	0	16	48	1.46
45523327--45523398	36	2.0	36	89	5	110	37	0	12	50	1.41
45523296--45523416	12	10.1	12	72	19	67	33	0	16	50	1.46
45523478--45523522	19	2.3	19	85	11	56	53	2	0	44	1.13
45523489--45523541	21	2.5	22	78	9	65	54	1	1	41	1.22
45526167--45526233	20	3.2	21	75	14	59	49	0	7	43	1.31
45526240--45526282	10	4.3	10	88	8	61	16	4	0	79	0.90
45526917--45527000	7	11.4	7	75	13	71	36	42	0	20	1.52
45527125--45527167	21	2.0	21	86	0	59	39	34	0	25	1.56
45527164--45527301	70	2.0	70	95	0	249	48	21	0	30	1.50
45527345--45527375	14	2.2	14	94	0	53	41	38	0	19	1.51
45528710--45528742	2	16.5	2	100	0	66	48	0	0	51	1.00
45535257--45536131	319	2.8	314	91	2	1428	37	20	18	24	1.94
45535257--45536131	158	5.5	159	92	1	1427	37	20	18	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45538086--45538124	19	2.1	18	85	9	51	46	0	0	53	1.00
45542982--45543042	26	2.3	27	86	8	90	34	13	11	40	1.80
45545379--45545445	25	2.8	24	77	4	71	35	20	26	16	1.94
45552093--45552197	55	1.9	55	86	5	151	32	15	12	40	1.84
45552178--45552605	219	2.0	219	95	0	779	33	9	21	36	1.85
45555426--45555453	14	2.0	14	100	0	56	71	0	21	7	1.09
45558468--45558510	21	2.0	21	86	0	59	37	23	23	16	1.94
45560999--45561092	44	2.1	45	96	2	172	42	34	3	20	1.68
45561078--45561106	13	2.2	13	100	0	58	55	13	6	24	1.63
45564680--45564745	20	3.5	20	69	12	66	34	6	13	45	1.68
45564658--45564769	37	3.0	37	93	0	188	33	6	12	47	1.66
45564700--45564760	17	3.4	17	68	12	50	32	3	9	54	1.50
45564771--45564850	9	8.9	9	90	0	124	31	10	23	35	1.88
45565018--45565042	12	2.1	12	100	0	50	16	24	36	24	1.94
45573697--45573738	21	2.1	21	86	8	61	35	4	2	57	1.33
45574444--45574541	23	4.3	23	90	2	162	31	26	21	20	1.98
45574451--45574539	45	2.0	45	95	0	160	31	26	22	19	1.97
45581805--45581902	23	4.3	23	90	2	162	31	26	21	20	1.98
45581812--45581900	45	2.0	45	95	0	160	31	26	22	19	1.97
45584481--45584511	14	2.2	14	100	0	62	19	6	29	45	1.75
45584770--45584799	12	2.5	12	94	0	51	13	23	20	43	1.86
45585313--45585520	91	2.3	91	85	2	265	45	4	3	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45585550--45585581	16	1.9	17	93	6	57	53	0	0	46	1.00
45585574--45585786	61	3.4	63	69	17	194	41	2	6	49	1.41
45585536--45585828	120	2.4	120	92	2	482	42	2	5	50	1.36
45585657--45585691	18	2.0	17	88	5	52	40	0	0	60	0.97
45585777--45585811	18	2.0	17	88	5	52	45	0	0	54	0.99
45585765--45586039	147	1.9	149	96	1	509	47	2	3	46	1.33
45585924--45585958	18	2.0	17	88	5	52	45	0	0	54	0.99
45586117--45586214	45	2.2	44	83	1	124	32	25	5	36	1.78
45586195--45586246	16	3.2	16	91	0	77	34	34	0	30	1.58
45586317--45586468	34	4.7	33	77	14	147	40	0	15	44	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189