genome.fa.s20.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  114  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31917922--31918106	101	1.8	101	88	3	282	30	24	17	27	1.97
31925242--31925282	20	2.0	20	100	0	82	31	0	19	48	1.49
31936626--31936780	77	2.0	77	98	0	301	25	12	15	46	1.81
31937149--31937316	83	2.0	83	98	0	327	25	20	21	32	1.97
31938314--31938351	19	2.0	19	100	0	76	52	15	5	26	1.64
31939968--31940006	20	1.9	19	85	10	51	30	5	2	61	1.31
31940179--31940225	15	2.8	16	81	15	51	51	4	0	44	1.21
31946749--31946790	21	2.0	21	100	0	84	38	14	9	38	1.78
31948373--31948445	25	2.9	25	75	6	67	45	16	9	28	1.79
31952793--31952844	24	2.2	24	96	0	95	40	1	3	53	1.30
31952804--31952856	24	2.2	24	89	0	79	39	5	9	45	1.60
31957206--31957259	24	2.2	24	93	0	90	40	5	7	46	1.55
31957464--31957524	27	2.1	29	85	8	81	42	6	1	49	1.38
31962083--31962122	21	1.9	21	100	0	80	25	15	30	30	1.95
31962365--31962761	202	2.0	200	92	1	668	44	19	11	23	1.83
31965205--31965635	217	2.0	217	97	0	817	34	25	11	28	1.90
31970546--31970590	23	2.0	23	83	12	58	73	6	15	4	1.21
31979596--31979636	15	2.9	14	86	10	57	75	0	24	0	0.80
31980492--31980534	22	2.0	21	81	4	50	60	9	4	25	1.47
31981744--31981773	14	2.1	14	100	0	60	13	26	6	53	1.64
31990170--31990197	3	9.3	3	100	0	56	67	0	32	0	0.91
31990850--31990890	22	1.9	21	85	5	55	36	12	12	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31996452--31996485	10	3.6	9	92	4	50	32	0	2	64	1.08
32004989--32005052	29	2.2	29	91	0	101	31	26	1	40	1.65
32005823--32005849	14	1.9	14	100	0	54	40	7	29	22	1.81
32009623--32009682	3	19.7	3	82	3	75	61	3	3	31	1.28
32017049--32017113	30	2.2	30	91	0	103	30	13	32	23	1.93
32018486--32018550	3	21.0	3	73	17	53	30	3	3	63	1.25
32018505--32018545	17	2.5	16	92	4	64	26	4	4	63	1.35
32018486--32018550	17	3.7	18	76	14	55	30	3	3	63	1.25
32020861--32020900	19	2.0	20	85	4	55	25	20	7	47	1.75
32023597--32023686	47	1.9	46	84	6	119	45	16	24	13	1.83
32025068--32025216	44	3.4	44	78	1	172	30	16	21	30	1.96
32024982--32025172	44	4.2	45	75	5	170	29	18	23	29	1.97
32025039--32025181	45	3.1	45	77	5	162	31	15	25	27	1.96
32025021--32025822	89	9.0	89	78	9	724	30	17	23	28	1.97
32025336--32025840	45	11.3	44	74	7	417	30	16	23	29	1.96
32027210--32027274	3	21.0	3	73	17	53	30	3	3	63	1.25
32027229--32027269	17	2.5	16	92	4	64	26	4	4	63	1.35
32027210--32027274	17	3.7	18	76	14	55	30	3	3	63	1.25
32029499--32029534	19	1.9	19	94	5	65	61	5	5	27	1.41
32031826--32031887	32	1.9	32	93	0	106	35	0	1	62	1.05
32031829--32031890	14	4.1	15	76	17	65	32	0	1	66	1.02
32032965--32033002	16	2.4	16	86	0	58	26	7	0	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32036988--32037059	19	3.6	19	74	20	58	52	2	5	38	1.39
32052009--32052257	50	4.8	50	85	4	284	20	29	24	26	1.99
32052008--32052257	100	2.4	104	88	6	357	20	29	24	26	1.99
32052352--32052383	13	2.5	13	94	0	55	56	12	0	31	1.37
32052595--32052652	30	1.9	30	89	0	89	31	24	3	41	1.71
32059602--32059850	50	4.8	50	85	4	284	20	29	24	26	1.99
32059601--32059850	100	2.4	104	88	6	357	20	29	24	26	1.99
32059945--32059976	13	2.5	13	94	0	55	56	12	0	31	1.37
32060188--32060245	30	1.9	30	89	0	89	31	24	3	41	1.71
32074159--32074248	28	3.2	28	80	9	94	15	11	13	60	1.60
32084726--32084765	20	2.0	19	85	9	53	30	5	12	52	1.60
32095601--32095664	32	2.0	33	81	9	78	40	0	7	51	1.31
32095948--32095990	19	2.3	19	84	8	52	32	2	0	65	1.06
32095946--32095990	20	2.3	19	84	3	63	33	2	0	64	1.06
32100295--32100322	14	2.0	14	100	0	56	35	7	0	57	1.26
32104615--32104657	13	3.7	13	71	28	51	9	20	27	41	1.83
32104711--32104824	42	2.7	42	81	0	129	33	22	19	24	1.97
32104761--32104941	43	4.3	42	79	6	159	26	24	19	29	1.98
32104753--32104941	84	2.2	85	83	3	229	26	25	19	28	1.99
32104793--32104972	86	2.1	85	81	3	209	27	25	17	29	1.98
32105324--32105373	21	2.4	21	89	0	73	2	46	16	36	1.58
32110837--32111213	9	43.4	9	68	16	199	34	2	20	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32110826--32110930	25	4.2	25	80	7	122	34	1	19	44	1.61
32110837--32111213	16	21.7	18	69	16	199	34	2	20	41	1.66
32110837--32110985	25	5.8	25	76	9	131	34	2	21	41	1.67
32110837--32111048	52	4.2	51	75	9	172	34	2	22	41	1.67
32110920--32111176	41	6.0	42	73	14	134	35	2	21	41	1.67
32110911--32111213	25	11.2	27	67	17	121	34	2	21	41	1.66
32111273--32111331	13	4.5	13	91	0	82	45	1	10	42	1.48
32111232--32111358	66	1.9	67	80	1	148	44	2	10	42	1.51
32111369--32111471	52	1.9	53	81	14	124	53	1	5	38	1.36
32112740--32112780	13	3.2	13	83	13	57	51	9	4	34	1.56
32112821--32112944	60	2.1	60	93	1	214	41	25	8	24	1.84
32116532--32116566	18	2.0	17	88	5	52	54	0	0	45	0.99
32116446--32116675	75	3.1	75	69	21	241	46	2	3	48	1.31
32116436--32116742	145	2.1	145	85	6	435	48	2	2	45	1.31
32116759--32116792	17	2.0	17	94	0	59	55	0	2	41	1.15
32118542--32118580	21	1.9	20	94	5	69	25	12	5	56	1.57
32120220--32120259	21	1.9	21	84	0	53	72	10	2	15	1.21
32121879--32121948	22	3.2	22	71	18	74	42	7	8	41	1.63
32121889--32121958	21	3.3	21	72	18	72	44	8	10	37	1.69
32121873--32121958	43	2.0	43	97	0	163	44	8	9	38	1.66
32122958--32123021	18	3.4	17	74	21	56	46	3	3	46	1.34
32128517--32128558	22	2.0	22	90	4	68	14	16	4	64	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32128558--32128623	17	3.5	17	69	21	51	50	3	1	45	1.26
32128749--32128781	17	2.1	17	88	11	52	60	12	6	21	1.53
32131715--32131776	17	3.6	16	77	12	61	61	0	0	38	0.96
32131981--32132031	25	2.0	25	84	0	66	45	13	1	39	1.55
32137597--32137673	33	2.5	30	82	6	91	58	6	0	35	1.24
32145540--32145632	45	2.1	45	89	0	141	31	21	19	27	1.97
32145638--32145820	51	3.6	51	78	6	194	30	27	17	25	1.97
32145635--32145820	101	1.8	102	87	5	261	30	27	17	24	1.97
32150656--32150733	39	2.0	39	84	0	102	29	2	21	46	1.65
32150925--32151370	223	2.0	223	92	3	738	21	10	23	43	1.85
32161318--32161366	19	2.4	20	86	10	64	59	4	2	34	1.28
32169066--32169118	19	2.7	19	73	5	52	62	0	0	37	0.96
32187970--32188012	11	4.0	11	82	14	54	25	0	11	62	1.29
32188348--32188389	18	2.3	18	87	0	57	40	2	2	54	1.26
32188828--32188893	19	3.3	20	75	16	57	51	1	1	45	1.19
32188874--32188909	19	1.9	19	88	5	56	55	0	2	41	1.14
32202040--32202119	39	2.0	40	84	15	105	52	3	1	42	1.27
32202039--32202102	19	3.4	17	79	14	65	57	1	1	39	1.17
32204532--32204571	17	2.4	17	86	0	53	60	2	37	0	1.11
32204743--32204798	24	2.2	25	84	6	69	17	0	8	73	1.08
32207256--32207336	38	2.1	38	90	0	126	17	48	13	20	1.81
32207581--32207748	48	3.5	48	79	12	177	42	11	10	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32211386--32211615	109	2.1	106	85	9	306	58	13	2	25	1.46
32218574--32218615	15	2.6	16	81	14	50	21	2	11	64	1.38
32220986--32221205	107	2.1	107	95	0	395	35	19	18	26	1.95
32237514--32237588	9	8.3	9	89	0	114	33	9	22	34	1.86
32237860--32237918	17	3.7	16	80	6	66	72	0	1	25	0.93
32237932--32237993	20	2.9	21	71	11	54	59	1	0	38	1.07
32237914--32238020	43	2.5	42	78	15	105	62	1	2	32	1.20
32238417--32238477	29	2.2	27	82	5	68	27	1	1	68	1.08
32240283--32240315	3	11.0	3	93	0	57	63	0	3	33	1.10
32242725--32242776	24	2.2	24	89	0	77	36	3	9	50	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189