genome.fa.s20.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  127  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36415355--36415400	17	2.5	19	83	16	62	32	8	0	58	1.28
36417074--36417345	139	2.0	139	96	0	508	39	5	13	40	1.69
36418247--36418347	38	2.7	38	90	0	166	17	18	26	36	1.94
36423028--36423117	44	2.0	44	93	0	153	25	13	13	47	1.79
36423038--36423106	22	3.1	22	68	15	70	26	10	14	49	1.75
36426726--36427107	45	8.6	45	81	7	410	47	15	16	20	1.82
36426743--36426816	38	1.9	38	94	0	130	47	18	16	17	1.83
36426823--36426894	24	3.1	24	66	18	62	48	15	16	19	1.81
36426802--36426915	21	5.1	21	66	18	70	49	13	16	21	1.79
36429853--36429902	19	2.6	19	78	9	57	58	8	0	34	1.28
36430544--36430690	27	5.5	27	80	3	136	25	23	14	36	1.93
36436597--36436784	61	3.1	61	66	17	156	43	3	5	47	1.45
36436532--36436806	120	2.3	120	90	1	426	42	2	4	49	1.38
36436598--36436781	64	3.1	59	64	21	130	42	3	5	47	1.46
36436765--36436799	18	2.0	17	88	5	52	45	0	0	54	0.99
36436970--36437064	45	2.1	45	88	1	138	32	27	5	34	1.79
36437045--36437096	16	3.2	16	94	0	86	34	36	0	28	1.58
36437822--36438172	119	2.9	119	98	0	684	20	18	22	38	1.94
36438919--36439039	60	2.0	60	100	0	242	42	6	4	45	1.51
36440324--36440429	19	5.7	19	75	10	85	53	2	0	42	1.22
36440377--36440431	10	5.7	10	76	8	51	61	3	0	34	1.13
36440396--36440431	10	3.7	10	88	7	56	66	5	0	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36440376--36440437	19	3.3	18	82	8	52	61	3	0	35	1.12
36449291--36449333	16	2.7	16	77	0	50	48	2	2	46	1.27
36449429--36449454	8	3.2	8	100	0	52	34	0	0	65	0.93
36450971--36451003	15	2.1	16	88	5	50	60	3	3	33	1.27
36451149--36451178	7	4.1	7	95	4	51	40	0	3	56	1.16
36455011--36455107	5	19.6	5	77	17	96	38	0	2	59	1.09
36455176--36455239	33	1.9	34	87	9	96	42	0	7	50	1.31
36455356--36455413	3	20.0	3	72	13	50	34	1	3	60	1.24
36455328--36455413	24	3.5	24	70	16	61	36	1	4	58	1.27
36455579--36455609	15	2.0	15	93	6	53	64	9	19	6	1.45
36455566--36455609	16	2.8	16	83	13	56	68	9	18	4	1.34
36455562--36455648	26	3.4	25	78	7	77	70	4	21	3	1.21
36462453--36462498	24	2.0	24	82	4	58	52	10	2	34	1.49
36467313--36467364	23	2.3	23	93	0	86	38	0	11	50	1.39
36468220--36468245	5	5.2	5	100	0	52	19	0	0	80	0.71
36475578--36475629	23	2.3	23	96	0	95	36	0	13	50	1.42
36475587--36475629	13	3.5	13	75	18	56	37	0	13	48	1.43
36480618--36480817	70	2.9	70	83	3	258	29	29	19	22	1.98
36481482--36481510	9	3.2	9	100	0	58	20	0	0	79	0.74
36482454--36483194	70	10.6	70	82	0	591	29	26	18	26	1.98
36487287--36487323	15	2.5	15	100	0	74	35	0	35	29	1.58
36491421--36491473	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36500026--36500065	19	2.1	19	85	0	53	27	0	12	60	1.33
36501106--36501312	55	3.9	51	87	6	247	24	8	14	52	1.69
36502685--36502726	11	3.5	12	81	9	50	38	7	21	33	1.81
36505892--36505930	11	3.5	11	85	0	51	30	2	38	28	1.70
36506047--36506075	13	2.1	14	93	6	51	10	6	13	68	1.37
36514598--36514845	50	4.8	50	85	3	298	21	29	21	27	1.99
36515402--36515427	12	2.2	12	100	0	52	69	15	0	15	1.20
36519253--36519286	16	2.2	15	89	5	50	55	0	0	44	0.99
36519250--36519296	22	2.2	20	85	14	60	55	0	0	44	0.99
36519354--36519414	30	2.0	30	84	6	79	47	9	8	34	1.66
36525352--36525400	24	2.0	24	92	0	80	38	20	4	36	1.72
36526505--36526751	50	4.8	50	78	3	208	23	28	21	26	1.99
36534137--36534313	50	3.4	50	80	9	169	22	27	22	28	1.99
36539041--36539225	79	2.3	81	83	7	227	24	22	27	24	2.00
36539042--36539225	40	4.6	40	82	9	207	25	22	27	24	2.00
36539094--36539258	79	2.1	79	83	6	201	26	21	27	24	1.99
36542167--36542214	21	2.2	21	85	3	60	37	25	14	22	1.92
36549397--36549455	15	3.8	16	80	10	68	33	18	6	40	1.77
36555871--36555932	30	2.1	30	87	6	90	48	11	8	32	1.68
36563202--36563248	22	2.1	22	84	7	60	57	0	4	38	1.18
36570814--36570886	34	2.1	34	97	0	137	27	10	34	27	1.90
36571652--36571707	24	2.4	24	87	3	78	39	30	3	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36574108--36574193	19	4.4	18	72	17	66	75	1	17	5	1.06
36574128--36574193	15	4.5	15	78	16	59	74	1	18	6	1.10
36578298--36578353	23	2.4	23	84	3	67	41	30	1	26	1.66
36578414--36579192	259	3.0	259	99	0	1522	28	21	12	37	1.90
36611892--36612141	27	9.3	27	87	0	311	40	24	16	18	1.91
36611910--36612140	81	2.9	81	90	1	356	40	24	17	17	1.90
36611910--36612168	81	3.2	81	86	3	344	40	23	16	18	1.91
36611911--36612168	54	4.8	52	80	9	243	40	24	17	18	1.90
36614468--36614492	6	4.2	6	100	0	50	20	0	0	80	0.72
36629598--36629788	40	4.8	40	94	1	303	27	30	20	21	1.98
36629557--36629788	80	2.9	79	86	3	288	26	30	20	22	1.98
36637278--36637990	44	16.2	44	62	11	163	29	20	24	25	1.99
36637096--36638040	132	7.2	132	93	0	1593	29	20	24	25	1.99
36638028--36638136	44	2.5	44	83	5	132	26	21	22	30	1.98
36643033--36643242	42	5.0	42	88	6	284	31	20	23	24	1.98
36643033--36643242	85	2.5	85	86	7	286	31	20	23	24	1.98
36643679--36643727	21	2.3	21	89	0	71	2	38	20	38	1.64
36649230--36649513	25	10.6	25	70	19	128	38	1	17	42	1.56
36649230--36649567	9	37.6	9	67	17	159	36	1	17	43	1.60
36649283--36649501	16	13.8	16	71	17	102	36	0	17	44	1.56
36649299--36649350	19	2.8	19	85	2	70	32	1	19	46	1.61
36651677--36652175	245	2.0	245	92	1	831	34	20	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36652037--36652271	115	2.0	115	92	0	389	34	19	19	27	1.96
36652724--36652805	14	5.9	13	74	17	58	46	30	2	20	1.64
36653134--36653196	7	8.9	7	76	8	56	34	46	3	15	1.62
36653796--36653946	72	2.1	72	81	2	178	33	25	19	21	1.97
36656015--36656065	18	2.8	19	76	8	61	49	7	0	43	1.32
36656031--36656058	12	2.3	12	100	0	56	50	7	0	42	1.30
36659656--36659693	9	4.3	9	86	6	60	78	7	0	13	0.94
36659657--36659693	17	2.2	17	95	0	65	78	8	0	13	0.96
36659691--36659739	21	2.5	20	83	6	55	75	0	20	4	0.96
36659696--36659739	21	2.1	21	86	0	61	77	0	20	2	0.88
36661859--36663669	44	41.2	44	65	16	763	26	22	24	26	2.00
36661801--36663713	88	21.7	88	93	0	3135	27	22	24	25	2.00
36663740--36663945	46	4.5	46	91	1	297	25	15	27	32	1.95
36663918--36664320	132	3.1	132	91	0	637	31	18	24	26	1.98
36665244--36665286	21	2.0	21	90	0	68	27	27	9	34	1.88
36666891--36666932	22	1.9	22	85	9	59	19	14	0	66	1.25
36668729--36668779	21	2.5	20	78	12	59	43	1	0	54	1.11
36673147--36673180	6	5.7	6	92	0	59	35	2	32	29	1.73
36676927--36676977	19	2.6	20	93	6	79	31	0	39	29	1.57
36676935--36676977	19	2.3	19	100	0	86	30	0	41	27	1.56
36678029--36678196	52	3.2	52	88	0	237	37	10	28	23	1.88
36678029--36678230	26	7.7	26	85	0	215	36	10	28	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36678213--36678268	27	2.1	26	83	9	69	26	19	26	26	1.99
36680487--36680525	20	2.0	20	90	10	62	35	2	7	53	1.43
36684577--36684808	27	8.6	27	87	3	272	27	14	28	29	1.95
36684578--36684787	109	1.9	108	89	4	325	27	14	28	30	1.95
36684574--36684808	109	2.2	108	85	3	321	27	14	28	29	1.96
36692717--36692921	27	7.6	27	85	4	252	26	15	28	29	1.96
36695385--36695438	6	8.7	6	76	15	56	81	5	0	12	0.85
36695385--36695438	12	4.3	12	84	13	65	81	5	0	12	0.85
36696482--36696515	17	1.9	18	94	5	61	35	5	0	58	1.22
36698621--36698760	69	2.0	69	91	0	226	27	20	22	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189