genome.fa.s20.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  138  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41890871--41891097	81	2.8	79	82	4	249	43	19	18	18	1.89
41891255--41891305	26	2.0	26	92	0	84	11	23	27	37	1.90
41896533--41896571	19	2.1	19	95	0	69	17	28	33	20	1.96
41907170--41907198	12	2.3	13	94	5	51	65	6	6	20	1.40
41910119--41910152	10	3.6	9	92	8	50	14	0	2	82	0.79
41915318--41915569	40	6.3	40	89	3	330	23	19	27	28	1.98
41923743--41923994	40	6.3	40	89	3	330	23	19	27	28	1.98
41928908--41928978	26	2.7	26	84	0	97	39	22	18	19	1.92
41942221--41942462	50	4.7	50	80	5	193	22	26	23	28	1.99
41942566--41942602	18	2.1	18	100	0	74	56	5	5	32	1.45
41950514--41950572	25	2.3	28	75	19	65	40	22	0	37	1.54
41950667--41950856	51	3.7	51	75	11	192	32	26	16	24	1.96
41950661--41950883	101	2.2	103	78	6	240	32	27	15	25	1.95
41952248--41952296	10	4.9	10	78	9	55	28	16	30	24	1.96
41952248--41952296	20	2.5	20	86	6	73	28	16	30	24	1.96
41953160--41953231	33	2.2	33	84	0	90	30	16	19	33	1.94
41956738--41956786	20	2.5	20	75	0	53	26	12	32	28	1.92
41962639--41962670	16	2.0	16	93	0	55	25	15	0	59	1.36
41962898--41963088	51	3.8	51	79	5	226	31	28	15	24	1.96
41962896--41963080	101	1.8	100	86	8	266	31	27	16	24	1.96
41968907--41968935	12	2.5	12	94	5	51	24	3	10	62	1.43
41969711--41969786	36	2.1	36	85	4	100	27	9	28	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41991300--41991334	17	2.1	17	100	0	70	22	22	22	31	1.98
41992625--41992830	59	3.5	58	77	7	204	27	22	14	35	1.93
41993971--41994022	23	2.3	24	80	12	65	21	32	3	42	1.71
41997271--41997493	40	5.6	39	80	7	216	25	21	27	25	1.99
41997351--41997528	79	2.2	80	82	3	200	25	21	28	24	1.99
42005165--42005387	40	5.6	39	80	7	216	25	21	27	25	1.99
42005245--42005422	79	2.2	80	82	3	200	25	21	28	24	1.99
42007529--42007560	16	2.0	16	93	0	55	37	28	3	31	1.73
42009752--42009817	33	2.0	33	85	5	89	24	25	25	24	2.00
42009953--42010029	26	3.0	26	82	0	91	42	24	19	12	1.86
42010204--42010508	27	11.3	28	80	7	251	20	19	17	41	1.90
42010259--42010449	80	2.4	81	85	3	251	21	22	16	39	1.92
42010202--42010443	107	2.2	108	84	5	312	22	20	16	40	1.91
42010204--42010508	81	3.8	80	81	3	335	20	19	17	41	1.90
42010205--42010560	54	6.6	54	79	4	292	20	18	18	41	1.90
42010489--42010560	27	2.7	27	86	0	99	18	12	27	41	1.86
42012815--42012894	30	2.8	28	90	3	115	26	26	25	22	2.00
42012774--42012902	28	4.4	28	78	11	125	27	25	24	22	2.00
42013013--42013080	26	2.6	26	83	0	73	41	22	22	14	1.90
42013032--42013083	26	2.0	26	92	0	86	36	25	25	13	1.92
42013224--42013338	27	4.3	27	82	9	128	18	16	18	46	1.84
42013871--42014154	41	7.0	41	86	2	331	32	16	29	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42014011--42014078	21	3.3	21	66	12	59	29	13	33	23	1.93
42014011--42014147	21	6.8	20	63	12	57	29	15	32	21	1.94
42017656--42017757	20	5.1	20	75	4	89	10	26	20	42	1.85
42023526--42023583	30	1.9	30	96	0	107	36	17	25	20	1.94
42032048--42032239	91	2.1	90	86	0	267	26	23	22	27	2.00
42038443--42038481	20	1.9	21	89	5	62	43	12	0	43	1.42
42043061--42043180	56	2.1	56	98	0	231	45	9	23	22	1.81
42044312--42044495	40	4.6	39	82	9	203	23	22	28	25	1.99
42044364--42044518	79	2.0	79	83	7	199	25	20	27	26	1.99
42050899--42051017	55	2.1	56	98	1	231	44	9	23	22	1.81
42052158--42052341	40	4.7	40	82	8	216	24	22	27	25	2.00
42052214--42052364	80	1.9	77	84	6	196	26	19	27	26	1.99
42058802--42058921	56	2.1	56	98	0	231	45	9	23	22	1.81
42060062--42060244	40	4.6	41	80	11	204	24	22	27	25	2.00
42060062--42060242	79	2.3	79	81	9	201	24	23	27	24	2.00
42060115--42060277	77	2.1	78	80	8	181	25	21	27	25	1.99
42068043--42068221	29	6.2	28	80	8	191	20	25	13	39	1.90
42068061--42068227	59	2.9	58	84	6	221	20	26	12	40	1.88
42084831--42084879	24	2.0	24	100	0	98	30	0	16	53	1.43
42102252--42102280	4	7.5	4	92	7	51	79	0	20	0	0.74
42107825--42107902	39	2.0	38	82	2	93	32	28	15	24	1.95
42107973--42108001	14	2.1	14	100	0	58	37	34	6	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42110137--42110210	27	2.7	27	73	20	73	29	28	8	33	1.86
42112822--42112913	25	3.7	25	84	5	89	28	22	21	27	1.99
42112851--42112915	25	2.6	25	90	0	94	26	23	23	27	2.00
42114150--42114207	25	2.3	25	84	0	71	34	22	20	22	1.97
42114623--42114648	8	3.2	8	100	0	52	46	23	0	30	1.53
42116829--42116878	20	2.5	20	83	0	64	22	20	14	44	1.86
42116818--42116885	20	3.3	20	77	2	55	23	25	13	38	1.91
42119658--42119714	29	2.0	29	85	0	78	26	14	26	33	1.94
42123854--42123889	14	2.6	14	91	4	56	38	33	0	27	1.57
42127482--42127581	39	2.6	38	87	1	137	49	9	5	37	1.56
42134549--42134600	23	2.3	22	75	21	54	9	23	1	65	1.32
42137634--42137688	20	2.8	20	91	0	92	5	25	21	47	1.72
42146858--42147178	47	6.7	47	91	3	475	28	29	8	33	1.87
42146858--42147178	96	3.4	96	87	6	492	28	29	8	33	1.87
42146879--42147150	143	1.9	141	92	3	456	27	30	10	32	1.90
42153828--42154095	104	2.6	105	93	1	450	18	20	30	29	1.97
42157836--42157873	19	2.0	19	94	0	67	36	5	23	34	1.78
42169415--42169503	43	2.1	43	97	0	169	19	17	12	50	1.77
42172367--42172449	41	2.0	41	90	4	132	50	10	14	24	1.74
42178116--42178153	15	2.4	17	86	8	53	28	0	2	68	1.03
42179449--42179570	43	2.8	43	87	2	147	24	17	27	31	1.97
42181246--42181523	27	10.4	26	80	4	261	19	15	21	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42181251--42181523	54	5.1	53	85	3	334	19	15	21	44	1.86
42184815--42184919	41	2.6	41	78	3	113	28	26	18	26	1.98
42186586--42186610	13	1.9	13	100	0	50	40	24	4	32	1.73
42209611--42209717	42	2.5	42	86	0	142	19	33	25	21	1.97
42209762--42209872	43	2.6	43	95	0	195	24	35	24	16	1.95
42220350--42220640	50	5.8	50	83	1	325	21	28	21	27	1.99
42222929--42223153	40	5.7	40	84	5	251	26	28	21	24	1.99
42223866--42224010	40	3.6	40	86	3	150	25	18	27	28	1.98
42223882--42224012	40	3.3	40	90	2	192	24	17	29	29	1.97
42223882--42224045	80	2.1	79	81	5	188	26	17	28	28	1.98
42230956--42231253	119	2.5	120	83	5	338	26	27	20	25	1.99
42230972--42231255	40	7.1	40	85	5	335	26	27	21	25	1.99
42232383--42232502	56	2.1	56	98	0	231	22	23	9	45	1.81
42242224--42242425	101	2.0	101	98	0	386	35	18	6	38	1.78
42255732--42255772	21	1.9	21	85	5	55	34	24	7	34	1.83
42256315--42256400	25	3.4	25	68	17	70	25	22	23	29	1.99
42256531--42256564	17	1.9	18	88	5	52	52	11	0	35	1.38
42258237--42258277	21	2.0	21	90	0	64	29	4	0	65	1.13
42258792--42258979	51	3.7	50	75	10	195	31	28	17	22	1.97
42258794--42258977	100	1.8	101	87	4	273	31	27	17	23	1.97
42267785--42267969	51	3.7	50	84	5	230	29	25	16	28	1.97
42267883--42267965	26	3.2	26	65	27	68	32	25	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42276991--42277064	37	2.0	37	94	0	130	36	17	12	33	1.87
42279751--42279787	14	2.6	14	82	0	56	62	2	10	24	1.41
42281722--42281790	28	2.5	27	83	4	93	47	1	30	20	1.59
42281792--42281846	20	2.8	20	89	5	78	38	0	32	29	1.58
42284227--42284283	29	2.0	29	92	0	96	42	0	8	49	1.34
42284233--42284283	15	3.5	15	71	15	52	45	0	5	49	1.26
42291213--42291239	2	13.5	2	100	0	54	48	0	0	51	1.00
42291984--42292034	22	2.3	22	100	0	102	27	33	0	39	1.57
42292009--42292098	41	2.2	41	96	2	164	31	26	0	42	1.56
42292110--42292174	31	2.1	31	94	5	114	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189