genome.fa.s20.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  162  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48593482--48593641	44	3.6	44	78	5	135	25	25	21	27	1.99
48593523--48593642	44	2.7	44	78	0	141	22	25	22	29	1.99
48602547--48602601	21	2.6	21	85	5	76	16	32	20	30	1.94
48607107--48607165	25	2.4	25	85	0	82	25	20	11	42	1.86
48625007--48625355	45	7.8	45	82	1	387	30	18	24	26	1.98
48625007--48625355	90	3.9	90	87	0	466	30	18	24	26	1.98
48625007--48625372	135	2.7	135	86	0	473	31	18	24	26	1.97
48625007--48625461	135	3.4	134	83	3	451	30	18	23	26	1.98
48625023--48625484	45	10.4	45	77	5	386	30	18	23	27	1.98
48626764--48626814	24	2.2	24	86	10	70	29	1	29	39	1.68
48630672--48630704	12	2.8	12	82	17	50	15	12	48	24	1.78
48638239--48638269	12	2.6	12	100	0	62	48	41	0	9	1.36
48643103--48643285	98	1.9	97	91	1	303	31	24	16	26	1.97
48644507--48644540	16	2.1	16	88	0	50	17	17	23	41	1.90
48644984--48645028	19	2.4	19	85	7	56	26	20	8	44	1.80
48649056--48649857	135	6.0	135	87	4	1058	31	15	21	31	1.94
48649602--48649671	31	2.3	31	89	0	104	28	20	18	32	1.96
48649056--48649624	45	12.6	45	88	0	841	31	14	21	32	1.93
48649508--48649857	121	2.7	126	85	6	467	31	17	21	29	1.96
48649635--48649857	45	5.0	45	90	0	329	31	17	21	29	1.96
48649559--48649709	76	2.0	76	94	0	266	27	17	21	32	1.96
48649425--48649844	211	2.0	211	88	0	624	30	16	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48649960--48650076	44	2.7	44	81	2	128	30	17	21	30	1.96
48651508--48651542	5	6.6	5	87	12	52	25	0	0	74	0.82
48651508--48651542	16	2.2	16	90	10	54	25	0	0	74	0.82
48651508--48651542	11	3.3	10	92	8	52	25	0	0	74	0.82
48660164--48660225	13	4.8	13	81	0	79	33	8	22	35	1.84
48660162--48660225	26	2.5	26	86	0	101	32	7	23	35	1.84
48662282--48662456	72	2.4	73	83	6	248	54	12	6	26	1.61
48662879--48662944	18	3.7	18	97	0	123	39	12	13	34	1.82
48663829--48663881	15	3.6	15	80	14	74	39	0	9	50	1.35
48663824--48663898	29	2.5	30	91	6	116	41	0	10	48	1.38
48663824--48663882	15	4.2	13	76	18	55	40	0	10	49	1.37
48664959--48665000	16	2.8	15	89	10	68	23	7	9	59	1.53
48667007--48667045	19	2.1	19	90	0	60	53	20	25	0	1.45
48667017--48667067	25	2.0	25	96	0	93	50	25	23	0	1.49
48667643--48667849	46	4.6	46	93	3	350	28	23	15	32	1.95
48667643--48667849	91	2.3	91	96	1	382	28	23	15	32	1.95
48673075--48673134	10	5.8	10	74	14	50	58	0	1	40	1.08
48673148--48673217	34	2.1	33	81	7	79	61	5	4	28	1.38
48673565--48673627	25	2.5	25	97	0	117	60	0	3	36	1.13
48675285--48675335	11	4.8	11	79	13	54	37	1	0	60	1.08
48675304--48675337	18	2.0	17	88	11	52	35	0	0	64	0.94
48675733--48675831	49	2.0	49	96	0	180	16	12	31	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48677535--48677593	18	3.3	18	79	9	66	37	1	1	59	1.18
48677519--48677606	43	2.0	43	82	4	106	35	2	3	59	1.27
48677535--48677600	28	2.5	26	87	7	89	36	1	1	60	1.15
48684292--48684345	21	2.6	21	90	0	90	25	7	37	29	1.83
48689635--48689669	15	2.2	16	90	5	54	71	0	2	25	1.00
48689635--48689676	16	2.7	15	88	3	57	73	0	2	23	0.94
48689653--48689750	45	2.2	43	78	12	101	59	2	1	37	1.16
48689741--48689787	19	2.5	19	82	0	58	57	2	6	34	1.36
48689754--48689802	19	2.6	19	76	0	53	61	0	2	36	1.08
48696865--48696905	15	2.7	15	85	10	57	41	4	0	53	1.22
48698762--48698816	22	2.7	20	85	5	65	21	29	36	12	1.91
48705919--48705973	28	2.0	28	85	0	74	43	16	14	25	1.86
48709082--48709115	6	5.7	6	92	0	59	52	44	0	2	1.16
48720600--48720634	16	2.1	17	89	5	54	40	11	0	48	1.39
48723922--48723997	39	1.9	40	84	7	102	26	21	25	27	1.99
48730960--48731053	44	2.2	44	96	1	172	51	9	11	27	1.69
48734914--48734953	21	2.0	21	90	5	64	42	20	10	27	1.83
48737263--48737452	63	3.0	63	90	0	308	32	13	23	31	1.93
48742065--48742125	31	1.9	32	83	3	79	24	32	26	16	1.96
48743688--48743741	27	1.9	29	88	7	85	77	0	20	1	0.86
48744055--48744113	31	1.9	30	100	0	100	47	22	3	27	1.67
48757255--48757319	25	2.7	23	72	11	58	38	15	27	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48767196--48767242	20	2.3	21	81	3	60	44	8	6	40	1.60
48768130--48768162	16	2.1	16	94	0	57	6	33	9	51	1.58
48768131--48768250	51	2.5	47	85	11	156	20	25	9	45	1.80
48771333--48771389	27	2.0	28	83	6	71	59	0	1	38	1.08
48771378--48771485	51	2.1	50	79	6	110	62	2	3	31	1.27
48771755--48771789	6	5.5	6	87	12	52	80	0	0	20	0.72
48771896--48772210	9	33.0	9	66	18	95	32	3	3	60	1.33
48771960--48772010	21	2.3	22	90	6	77	35	0	7	56	1.28
48772052--48772089	19	2.0	20	89	5	60	23	2	0	73	0.95
48773065--48773956	297	3.0	290	80	6	938	41	10	13	35	1.78
48774418--48774442	3	8.3	3	100	0	50	36	0	0	64	0.94
48777742--48777813	29	2.5	29	86	0	90	18	33	26	22	1.96
48777768--48777814	17	3.1	17	71	28	59	17	29	27	25	1.97
48777742--48777833	29	3.2	29	79	3	87	17	32	27	22	1.96
48779343--48779434	23	4.2	22	74	12	73	42	36	2	18	1.63
48783379--48783424	23	2.0	23	95	0	83	36	17	23	21	1.94
48791118--48791184	19	3.5	19	71	17	57	25	23	28	22	1.99
48791322--48791377	25	2.2	25	93	0	94	30	25	7	37	1.82
48792137--48792200	3	21.3	3	95	0	110	67	0	31	1	1.00
48793071--48793132	28	2.3	28	84	13	78	67	1	1	29	1.09
48793125--48793178	21	2.7	20	82	5	65	57	0	7	35	1.27
48793117--48793169	21	2.7	20	80	11	65	56	0	7	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48793354--48793406	21	2.6	20	75	3	52	32	3	1	62	1.24
48793361--48793420	32	1.9	31	86	3	84	31	5	1	61	1.27
48793450--48793507	25	2.4	24	78	18	59	29	6	0	63	1.20
48793673--48793736	24	2.8	23	73	15	60	35	1	1	60	1.15
48816414--48816714	146	2.1	146	98	0	584	33	23	17	25	1.96
48818298--48818499	92	2.2	92	88	3	291	34	10	20	34	1.87
48832624--48832689	33	2.0	33	93	0	114	15	24	16	43	1.86
48833152--48833178	8	3.4	8	100	0	54	51	0	11	37	1.37
48834489--48834527	18	2.1	19	85	4	53	43	15	15	25	1.86
48837141--48837206	33	2.0	33	93	0	114	15	24	15	45	1.84
48840308--48840590	43	6.5	43	73	10	132	26	22	21	30	1.99
48840308--48840673	44	8.5	43	72	15	219	26	22	21	30	1.99
48840379--48840755	173	2.2	163	87	6	515	27	22	19	31	1.98
48840611--48840794	38	4.8	38	70	19	132	28	19	19	32	1.96
48840603--48840861	118	2.2	118	93	4	434	27	20	18	33	1.96
48842206--48842232	1	27.0	1	100	0	54	0	0	0	100	0.00
48858249--48858508	127	2.0	127	95	0	466	45	13	11	30	1.78
48859264--48859455	81	2.4	81	84	2	253	24	17	18	39	1.92
48859264--48859452	41	4.7	41	87	1	240	24	16	18	40	1.91
48869656--48869707	6	8.7	6	93	0	68	25	0	57	17	1.40
48869649--48869709	18	3.4	18	83	0	77	26	0	55	18	1.42
48884035--48884094	24	2.5	24	86	0	84	51	23	3	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48884035--48884109	24	3.2	24	77	5	64	54	21	2	21	1.57
48885552--48885736	43	4.3	43	85	0	226	31	22	17	27	1.97
48891551--48891910	9	41.1	9	75	9	273	33	0	18	47	1.53
48891525--48891899	208	1.8	207	85	5	533	33	0	17	47	1.54
48892456--48892728	122	2.2	123	93	1	460	44	4	7	43	1.53
48894510--48894587	41	2.0	39	87	7	113	37	3	6	52	1.45
48894941--48895173	7	32.4	7	67	13	62	45	33	1	19	1.58
48894953--48894994	22	1.9	22	90	0	66	47	30	0	21	1.51
48894975--48895078	15	7.0	14	69	18	50	46	35	0	17	1.55
48895032--48895106	36	2.1	35	85	2	96	45	32	0	22	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189