genome.fa.s20.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  171  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50845320--50845366	20	2.3	21	82	17	64	36	0	8	55	1.31
50845320--50845371	19	2.7	20	85	14	65	32	0	7	59	1.26
50848152--50848218	26	2.6	25	79	9	64	55	4	0	40	1.20
50848151--50848218	25	2.6	25	77	11	66	54	5	0	39	1.25
50848444--50848488	21	2.2	20	84	7	65	33	26	6	33	1.83
50851183--50851222	21	1.9	21	84	0	53	22	10	37	30	1.87
50851190--50851233	21	2.1	21	91	0	70	15	4	47	31	1.66
50851917--50851946	4	7.5	4	92	0	51	70	3	0	26	1.03
50852027--50852068	19	2.2	19	83	8	50	66	0	11	21	1.23
50852084--50852126	4	10.8	4	79	0	50	67	0	4	27	1.10
50857397--50857487	40	2.2	40	98	1	173	30	24	14	30	1.94
50859620--50859663	23	1.9	22	82	17	54	36	25	0	38	1.56
50859708--50859801	45	2.1	45	93	0	161	30	24	19	25	1.98
50859803--50859979	51	3.5	51	75	12	193	32	27	15	24	1.95
50863593--50863643	23	2.3	21	78	12	57	35	23	21	19	1.96
50863598--50863642	23	2.0	23	86	0	63	40	22	20	17	1.92
50864637--50864676	6	6.7	6	83	11	55	0	20	0	80	0.72
50864637--50864676	18	2.2	18	91	8	64	0	20	0	80	0.72
50864698--50864752	20	2.7	21	80	11	69	1	16	5	76	1.06
50871091--50871256	25	6.6	25	70	10	106	34	18	27	19	1.95
50871235--50871283	25	2.0	25	83	0	62	38	12	26	22	1.89
50882125--50882166	21	2.0	21	90	0	66	30	14	9	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50882121--50882167	21	2.2	21	80	3	58	34	17	8	40	1.79
50896063--50896164	20	5.1	20	78	2	75	40	18	26	14	1.89
50902975--50903003	6	4.8	6	100	0	58	65	0	0	34	0.93
50904439--50904537	28	3.5	28	88	10	148	38	10	1	50	1.43
50904601--50904678	27	2.9	27	79	5	88	28	23	28	20	1.99
50904752--50904827	19	4.1	18	84	5	98	38	9	0	52	1.33
50904757--50904827	37	1.9	37	97	0	133	40	9	0	49	1.36
50905037--50905074	19	2.0	19	89	0	58	36	10	0	52	1.36
50905177--50905220	18	2.3	20	88	7	65	54	0	6	38	1.27
50907529--50907589	13	4.8	13	79	2	70	37	24	6	31	1.81
50913347--50913433	31	2.9	29	69	15	70	36	11	11	40	1.78
50918315--50918347	13	2.4	14	90	5	50	54	3	0	42	1.15
50921365--50921431	34	1.9	35	87	3	100	44	13	8	32	1.75
50921803--50921853	27	1.9	26	88	11	77	47	3	5	43	1.46
50925783--50925827	23	1.9	24	86	4	65	28	0	4	66	1.11
50932171--50932222	8	6.6	8	73	4	52	67	0	3	28	1.08
50932169--50932265	31	3.1	31	75	10	90	59	0	6	34	1.22
50946918--50946942	13	1.9	13	100	0	50	8	0	8	84	0.79
50946956--50947006	22	2.3	23	82	6	68	17	9	11	60	1.57
50946964--50947012	22	2.2	22	82	7	55	18	10	10	61	1.55
50949207--50949250	21	2.1	21	91	0	70	31	27	13	27	1.94
50949244--50949301	7	8.4	7	82	3	73	41	43	1	13	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50966171--50966205	17	2.0	17	88	5	52	8	8	0	82	0.83
50966888--50966963	27	2.8	26	76	9	71	50	7	15	26	1.72
50968274--50968488	113	1.9	113	82	7	267	29	10	19	40	1.85
50971575--50971616	21	2.0	21	86	13	59	61	4	0	33	1.17
50971903--50971944	18	2.2	19	83	8	50	71	0	19	9	1.13
50973465--50973544	24	3.1	24	79	18	74	56	1	1	41	1.15
50975689--50975813	50	2.5	51	79	10	150	22	27	22	28	1.99
50984270--50984372	40	2.5	40	82	1	116	29	21	24	25	1.99
50984425--50984562	40	3.4	39	82	5	141	30	19	22	27	1.98
50984654--50984732	40	2.0	40	82	5	97	30	22	22	24	1.99
50984496--50984803	155	2.0	158	81	4	374	30	15	23	29	1.95
50984917--50984957	14	2.9	14	92	0	64	14	0	34	51	1.43
50985145--50985239	48	2.0	49	81	6	113	20	2	30	47	1.61
50985139--50985307	7	24.1	7	69	4	72	21	1	30	46	1.62
50985139--50985307	21	8.0	21	69	7	92	21	1	30	46	1.62
50990095--50990365	43	6.3	43	78	7	255	26	16	23	33	1.96
50991767--50991804	20	2.0	20	89	5	60	36	0	5	57	1.21
50995920--50996043	42	2.9	43	81	9	137	31	20	22	25	1.98
50996401--50996459	21	2.8	21	81	0	73	6	32	16	44	1.74
50999723--50999800	11	6.9	11	68	25	56	51	5	5	38	1.46
50999723--51000080	34	10.3	34	68	21	217	47	4	7	39	1.53
50999761--50999879	57	2.1	57	96	1	222	47	5	9	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50999727--50999893	91	1.8	90	84	6	230	47	4	7	39	1.53
50999820--51000131	76	4.2	76	93	4	562	46	4	7	40	1.54
50999817--51000120	147	2.0	148	96	1	565	47	4	7	40	1.53
51000256--51000394	67	2.1	67	94	2	244	45	14	4	35	1.65
51000454--51000489	16	2.2	16	95	0	63	52	8	11	27	1.65
51002472--51002557	44	2.0	44	81	4	102	34	20	18	25	1.96
51003102--51003174	7	10.3	7	80	1	74	43	49	0	6	1.29
51003090--51003169	28	2.9	28	85	7	101	48	42	0	8	1.34
51003997--51004026	10	2.8	11	90	10	53	43	0	0	56	0.99
51004241--51004548	114	2.7	114	96	0	562	28	23	17	30	1.97
51004268--51004620	114	3.1	111	89	7	496	27	24	17	30	1.97
51004241--51004673	228	1.9	228	81	5	527	28	23	18	29	1.97
51010985--51011027	22	2.0	22	81	9	52	51	0	2	46	1.13
51017891--51017953	30	2.1	30	90	0	99	53	12	4	28	1.58
51029573--51029598	12	2.2	12	100	0	52	26	7	15	50	1.71
51029739--51029853	19	5.7	19	70	24	76	59	5	0	35	1.20
51029739--51029853	20	5.7	20	73	21	98	59	5	0	35	1.20
51029747--51029864	43	2.8	40	77	15	107	55	4	0	40	1.20
51029923--51029957	15	2.5	14	90	9	54	17	5	2	74	1.14
51034091--51034148	28	2.1	28	83	0	71	18	1	37	41	1.61
51038741--51038927	51	3.7	51	79	5	209	30	26	17	26	1.97
51038740--51038923	101	1.8	101	88	3	280	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51038734--51038957	101	2.2	100	78	10	249	29	27	16	26	1.96
51046080--51046112	16	1.9	18	88	11	52	51	0	0	48	1.00
51046090--51046134	22	2.2	20	84	8	54	42	0	0	57	0.98
51046089--51046156	20	3.6	18	77	13	57	41	1	0	57	1.08
51046153--51046182	15	2.0	15	93	0	51	63	0	0	36	0.95
51046334--51046396	32	2.0	32	90	0	99	25	14	9	50	1.72
51046345--51046410	32	2.2	31	81	8	73	24	15	9	51	1.72
51047140--51047373	73	3.2	73	67	18	219	47	16	14	20	1.82
51046998--51047452	151	3.0	151	99	0	903	46	15	16	21	1.83
51048015--51048059	20	2.2	20	92	0	72	42	4	13	40	1.64
51048681--51048718	18	2.1	18	100	0	76	55	0	0	44	0.99
51051631--51051707	27	2.9	27	92	0	118	27	22	29	20	1.98
51052016--51052079	19	3.4	19	78	4	85	35	10	1	51	1.47
51052156--51052320	82	2.0	82	98	0	321	45	10	6	38	1.63
51052389--51052484	19	5.2	19	81	9	117	50	0	12	37	1.41
51052389--51052484	37	2.6	37	96	0	174	50	0	12	37	1.41
51052396--51052489	18	5.1	18	76	11	84	50	1	11	37	1.46
51056731--51056791	21	2.9	22	73	7	56	50	3	3	42	1.34
51067422--51067507	43	2.0	43	100	0	172	37	13	9	39	1.78
51068639--51068700	30	2.1	28	85	11	81	25	6	0	67	1.14
51082420--51082544	50	2.5	51	81	6	148	29	16	23	30	1.96
51084180--51084210	16	1.9	16	93	0	53	16	19	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51085997--51086046	25	1.9	27	84	8	68	38	2	8	52	1.43
51088108--51088136	7	4.1	7	100	0	58	27	17	27	27	1.97
51103584--51103633	22	2.4	22	76	6	59	54	6	2	38	1.37
51104513--51104581	25	2.6	27	82	13	81	40	10	0	49	1.37
51104515--51104599	28	3.1	28	76	18	83	38	9	0	51	1.34
51105673--51105730	29	1.9	31	86	6	84	20	12	3	63	1.42
51107365--51107421	21	2.7	21	68	10	53	54	8	1	35	1.42
51107527--51107553	6	4.5	6	100	0	54	14	33	0	51	1.43
51112460--51112496	15	2.5	15	100	0	74	32	0	24	43	1.55
51113184--51113240	28	2.0	28	96	0	105	26	8	31	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189