genome.fa.s20.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  176  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52243816--52243936	9	13.4	9	88	3	154	24	9	24	41	1.84
52243824--52243936	18	6.3	18	91	0	181	24	9	24	40	1.85
52252993--52253027	6	5.7	6	96	3	61	17	0	17	65	1.27
52255380--52255476	44	2.2	44	92	1	169	22	20	2	54	1.55
52261793--52261817	13	1.9	13	100	0	50	36	0	16	48	1.46
52262600--52262654	26	2.1	26	100	0	110	27	21	21	29	1.99
52262686--52262723	18	2.2	16	90	9	58	39	0	0	60	0.97
52262959--52263010	26	2.0	26	100	0	104	34	7	23	34	1.83
52278962--52279059	49	2.0	49	100	0	196	34	10	16	38	1.82
52282039--52282073	14	2.5	14	86	13	54	40	0	8	51	1.33
52293410--52293441	15	2.0	17	88	11	50	56	9	0	34	1.32
52296049--52296116	17	3.9	17	74	12	57	41	11	11	35	1.78
52296077--52296158	18	4.4	19	75	15	66	39	8	10	41	1.71
52296058--52296228	36	4.6	37	75	10	138	39	9	9	40	1.72
52296094--52296291	18	10.7	18	68	15	100	40	9	12	37	1.75
52297013--52297081	7	10.3	7	76	14	58	0	20	0	79	0.73
52297012--52297093	10	8.0	10	78	16	80	0	21	0	78	0.76
52297014--52297091	19	4.4	18	82	10	108	0	21	0	78	0.76
52297013--52297091	13	6.2	13	78	11	67	0	21	0	78	0.75
52297020--52297103	13	6.5	13	80	9	50	0	25	0	75	0.81
52297722--52297785	30	2.1	31	82	2	76	40	3	26	29	1.71
52297983--52298008	5	5.2	5	100	0	52	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52298167--52299047	75	11.7	75	82	8	957	33	21	18	27	1.96
52298167--52299048	148	5.8	149	82	8	934	33	21	18	27	1.96
52319829--52319861	18	1.9	17	88	11	50	54	0	0	45	0.99
52320000--52320053	23	2.3	23	76	17	58	51	7	3	37	1.48
52320515--52320547	16	2.0	17	88	5	50	45	9	0	45	1.35
52320518--52320555	13	3.0	13	85	14	53	47	5	0	47	1.24
52321188--52321224	9	4.1	9	89	0	56	48	13	8	29	1.71
52323107--52323298	100	1.9	100	84	1	260	34	19	14	32	1.91
52324042--52324085	20	2.2	20	100	0	88	43	4	15	36	1.68
52325675--52325716	13	2.9	14	80	13	50	54	0	0	45	0.99
52325679--52325715	16	2.3	16	86	13	58	59	0	0	40	0.97
52327789--52327818	15	2.0	15	93	0	51	60	6	3	30	1.39
52329384--52329450	31	2.2	31	86	0	89	37	29	13	19	1.90
52330830--52330874	5	9.0	5	95	0	63	46	0	13	40	1.43
52330952--52331003	24	2.2	24	92	0	86	38	3	9	48	1.54
52335298--52335350	24	2.2	24	89	0	79	37	3	9	49	1.53
52335305--52335361	24	2.4	24	85	5	71	36	5	10	47	1.61
52335681--52335727	18	2.6	18	77	12	51	46	6	4	42	1.48
52337823--52337870	18	2.7	18	81	9	62	37	16	4	41	1.68
52342435--52342463	13	2.1	14	93	6	51	24	20	6	48	1.74
52355391--52355476	34	2.5	34	98	0	163	47	0	2	50	1.14
52355390--52355475	11	7.6	11	69	14	59	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52357141--52357175	17	2.0	18	88	5	54	54	0	20	25	1.45
52357821--52357858	9	4.3	9	86	6	60	73	0	26	0	0.83
52357821--52357854	4	8.0	4	87	12	50	73	0	26	0	0.83
52357821--52357858	13	2.9	13	92	0	67	73	0	26	0	0.83
52358227--52358260	17	1.9	18	88	5	52	41	0	23	35	1.55
52358654--52358679	13	2.0	13	100	0	52	7	53	7	30	1.57
52359892--52359925	17	2.0	17	88	11	52	26	20	0	52	1.46
52361311--52361349	17	2.3	18	86	8	55	43	0	0	56	0.99
52361366--52361410	20	2.3	19	81	11	54	42	4	2	51	1.34
52362823--52362848	3	8.7	3	100	0	52	34	0	0	65	0.93
52371573--52371604	2	16.0	2	93	0	55	50	3	0	46	1.17
52378922--52378951	3	10.0	3	92	0	51	33	3	0	63	1.11
52378923--52378954	15	2.1	15	100	0	64	34	6	0	59	1.23
52384923--52384968	21	2.2	21	96	0	83	41	6	36	15	1.73
52390830--52391407	89	6.5	89	89	0	834	30	18	23	26	1.98
52390838--52391409	45	12.9	43	72	9	231	30	18	23	27	1.98
52393054--52393086	3	11.0	3	93	0	57	33	3	0	63	1.10
52396204--52396237	15	2.3	15	89	0	50	35	5	5	52	1.50
52402261--52402301	17	2.4	17	88	12	57	63	21	0	14	1.30
52405552--52405716	75	2.2	75	97	0	312	22	25	15	36	1.93
52410032--52410063	16	2.0	16	100	0	64	56	0	12	31	1.37
52410386--52410426	16	2.6	16	88	0	64	46	7	2	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52411252--52411414	43	3.8	43	87	1	222	25	29	20	25	1.99
52411252--52411408	85	1.8	85	86	5	228	25	29	20	24	1.99
52411252--52411428	85	2.1	85	82	4	214	25	29	19	24	1.98
52413599--52413654	22	2.5	22	88	0	85	14	25	17	42	1.87
52414890--52414993	47	2.1	50	81	10	126	23	14	28	33	1.94
52420834--52420873	20	2.0	20	85	0	53	47	15	10	27	1.77
52421113--52421154	20	2.1	21	86	8	61	71	4	0	23	1.05
52424632--52424680	19	2.5	19	96	3	89	16	4	6	73	1.19
52425092--52425153	7	8.9	7	82	7	63	35	40	0	24	1.55
52425092--52425153	14	4.4	14	81	0	70	35	40	0	24	1.55
52425085--52425160	21	3.6	21	80	1	71	39	36	0	23	1.55
52425099--52425161	21	3.0	21	81	6	74	39	38	0	22	1.54
52425151--52425186	14	2.6	14	91	8	56	52	25	0	22	1.47
52426183--52426259	41	1.9	41	83	2	102	36	22	19	22	1.95
52426223--52426418	41	4.8	41	80	4	216	28	32	19	19	1.97
52426223--52426429	81	2.5	83	80	6	217	29	32	18	19	1.96
52426481--52426596	40	3.0	40	78	2	128	23	22	18	35	1.96
52427254--52427278	13	1.9	13	100	0	50	40	16	20	24	1.91
52429338--52429377	19	2.0	20	85	4	55	47	5	0	47	1.24
52431485--52431543	24	2.6	23	86	7	77	55	1	6	35	1.36
52434140--52434166	6	4.5	6	100	0	54	85	0	0	14	0.61
52434074--52435415	251	5.3	251	99	0	2614	44	20	12	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52434391--52434417	6	4.5	6	100	0	54	85	0	0	14	0.61
52434642--52434668	6	4.5	6	100	0	54	85	0	0	14	0.61
52434893--52434919	6	4.5	6	100	0	54	85	0	0	14	0.61
52435144--52435170	6	4.5	6	100	0	54	85	0	0	14	0.61
52454300--52454354	24	2.2	26	81	12	71	45	0	1	52	1.11
52454492--52454586	45	2.1	45	86	1	129	33	27	5	33	1.79
52454567--52454602	16	2.2	16	95	0	63	36	36	0	27	1.57
52457611--52457732	45	2.7	45	97	0	226	15	34	10	39	1.82
52457984--52458095	54	2.1	54	89	3	172	22	29	26	21	1.99
52462094--52462198	30	3.5	30	69	7	86	40	11	23	24	1.88
52462065--52462198	61	2.2	61	90	0	214	41	11	23	23	1.86
52465183--52465208	13	2.0	13	100	0	52	84	0	0	15	0.62
52476181--52476207	13	2.1	13	100	0	54	55	0	7	37	1.28
52476312--52476398	43	2.0	43	100	0	174	25	25	6	42	1.79
52482527--52482566	11	3.6	11	86	6	55	22	20	0	57	1.41
52484335--52484377	18	2.4	18	88	0	59	20	25	9	44	1.81
52484716--52484909	93	2.1	92	96	0	352	35	2	5	56	1.35
52484935--52484964	9	3.4	9	90	9	53	36	0	0	63	0.95
52488000--52488398	126	3.2	126	88	1	550	31	15	15	37	1.89
52488448--52488563	34	3.5	32	80	13	128	48	12	0	38	1.42
52488453--52488570	33	3.6	33	80	10	125	47	14	0	38	1.44
52492413--52492442	11	2.8	11	95	5	53	86	6	0	6	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52493397--52493488	47	2.0	47	85	6	125	30	1	0	68	0.97
52493446--52493477	8	3.9	8	92	8	55	12	0	0	87	0.54
52493448--52493477	9	3.4	9	90	9	53	10	0	0	90	0.47
52494966--52495000	18	1.9	18	94	0	61	65	5	2	25	1.28
52495038--52495155	27	4.4	27	86	0	155	19	40	24	15	1.90
52495230--52495281	4	13.5	4	76	15	56	75	0	21	3	0.97
52495231--52495281	19	2.7	19	93	6	86	74	0	21	3	0.98
52498332--52498360	14	2.1	14	100	0	58	51	6	0	41	1.28
52522041--52522194	59	2.6	60	91	2	238	42	2	5	49	1.39
52529766--52529791	7	3.7	7	100	0	52	57	0	26	15	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189