genome.fa.s20.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  20  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6440076--6440184	10	11.4	10	67	13	61	37	3	2	55	1.32
6440073--6440152	37	2.2	37	83	0	97	38	1	3	56	1.25
6440077--6440184	47	2.3	48	79	4	121	37	3	2	55	1.32
6440073--6440152	19	4.3	18	70	19	58	38	1	3	56	1.25
6440330--6440400	36	2.0	35	88	2	106	50	12	1	35	1.49
6441036--6441070	12	2.9	12	86	0	52	51	20	5	22	1.68
6450199--6450237	18	2.1	19	85	9	53	35	0	2	61	1.10
6450920--6450960	21	2.0	21	95	0	73	46	19	12	21	1.82
6453275--6453394	58	2.1	58	79	6	127	25	22	15	35	1.94
6454928--6454963	18	1.9	19	88	5	56	22	25	2	50	1.63
6457691--6458020	134	2.5	129	84	8	409	53	15	14	16	1.74
6457693--6458061	134	2.8	130	80	8	340	54	15	14	16	1.72
6461580--6461686	52	2.1	52	96	0	196	24	9	13	53	1.68
6462431--6462464	16	2.1	16	88	5	50	35	0	0	64	0.94
6464041--6464074	18	1.9	17	94	5	59	61	2	0	35	1.11
6465683--6465718	17	2.1	17	89	0	54	52	0	0	47	1.00
6470052--6470086	18	1.9	18	100	0	70	37	22	5	34	1.78
6470401--6470490	46	2.0	46	95	0	162	30	10	14	45	1.77
6470875--6470914	20	2.1	20	81	9	57	30	2	5	62	1.29
6475778--6475808	15	2.1	15	93	0	53	35	22	12	29	1.91
6479500--6479551	27	2.0	27	84	3	70	40	3	7	48	1.50
6493436--6493474	20	2.0	20	95	5	71	61	10	2	25	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6508903--6508983	30	2.7	30	78	0	81	8	12	45	33	1.72
6510605--6510634	15	2.1	15	93	6	53	76	6	0	16	0.99
6510676--6510752	11	7.2	10	87	10	100	42	0	29	27	1.56
6512859--6512989	60	2.2	59	81	8	140	38	12	16	32	1.86
6518333--6518414	41	2.0	41	97	0	155	41	2	20	35	1.66
6526657--6528758	262	8.0	263	77	8	1445	37	25	13	24	1.92
6526835--6528252	523	2.7	521	84	7	1733	38	25	12	23	1.90
6527884--6528759	272	3.2	272	79	8	778	37	24	13	24	1.92
6530629--6530691	20	3.2	20	80	14	69	69	4	1	23	1.16
6531212--6531300	37	2.5	36	82	13	105	24	2	5	67	1.24
6537375--6537405	16	1.9	16	93	0	53	41	16	3	38	1.64
6541642--6541679	5	7.6	5	100	0	76	39	21	0	39	1.53
6544120--6544152	16	2.1	16	100	0	66	39	30	18	12	1.87
6545022--6545858	254	3.2	254	83	7	890	46	14	13	25	1.81
6545465--6545858	138	2.8	139	92	2	639	49	14	12	24	1.77
6545475--6545909	138	3.1	138	90	2	638	50	13	11	23	1.75
6546883--6546931	23	2.1	24	85	11	66	44	6	2	46	1.39
6560284--6560341	22	2.7	21	77	15	64	32	3	20	43	1.69
6569689--6569730	23	1.9	23	85	9	61	28	2	2	66	1.16
6573960--6574006	21	2.1	23	81	18	64	53	4	4	38	1.40
6575184--6575243	31	1.9	31	86	6	86	36	11	8	43	1.71
6588646--6588682	17	2.1	18	90	5	58	67	0	5	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589833--6589892	29	2.0	29	87	6	84	45	18	5	31	1.71
6590297--6590366	27	2.6	27	88	6	106	42	10	0	47	1.37
6590435--6590501	27	2.5	27	95	0	116	28	29	26	14	1.96
6590545--6590692	4	36.0	4	76	14	108	70	0	29	0	0.87
6590549--6590737	16	12.2	16	68	19	107	69	0	30	0	0.89
6590545--6590741	30	6.4	29	69	18	105	69	0	30	0	0.89
6590536--6590755	40	5.5	40	81	13	242	68	0	31	0	0.90
6590639--6590734	3	34.0	3	70	22	50	68	0	31	0	0.90
6590546--6590734	29	6.8	30	67	21	85	69	0	30	0	0.88
6590545--6590693	64	2.3	64	77	10	160	71	0	28	0	0.87
6590536--6590762	82	2.8	83	84	7	281	69	0	30	0	0.89
6591553--6592340	321	2.5	318	94	1	1355	48	8	12	30	1.70
6591629--6592156	161	3.3	159	74	16	584	50	8	12	28	1.69
6591566--6592313	159	4.7	159	72	12	582	49	8	12	30	1.69
6594742--6594780	19	2.2	18	86	9	53	48	17	0	33	1.48
6595038--6595113	27	2.8	27	87	0	116	17	25	27	30	1.97
6598970--6599038	27	2.6	27	88	4	104	42	10	1	46	1.46
6599092--6599170	27	2.9	26	88	7	113	26	27	30	15	1.96
6599479--6599596	63	1.9	62	84	10	161	33	0	11	54	1.37
6601317--6601480	38	4.4	37	81	14	162	1	31	0	67	0.98
6601378--6601478	10	10.5	10	71	18	72	1	32	0	65	1.04
6601385--6601450	18	3.6	18	75	15	71	3	30	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6601422--6601483	14	4.1	14	72	23	54	0	30	0	69	0.89
6601321--6601464	76	1.9	76	83	11	188	1	31	0	66	1.00
6601316--6601501	72	2.5	74	77	14	197	1	33	0	65	1.00
6601429--6601500	34	2.2	34	83	9	89	0	37	0	62	0.95
6601615--6601654	19	2.1	19	85	4	53	7	0	12	80	0.91
6609210--6609262	26	2.0	26	100	0	106	58	0	0	41	0.98
6609222--6609273	13	4.0	13	75	9	61	55	0	0	44	0.99
6622934--6623004	30	2.4	30	95	0	124	7	26	21	45	1.77
6622934--6623021	30	2.9	30	86	6	99	5	28	21	44	1.75
6623758--6623796	4	9.8	4	100	0	78	51	23	0	25	1.49
6623943--6624080	43	3.2	43	62	19	106	31	14	14	39	1.86
6623937--6624181	86	2.9	86	94	0	420	33	14	13	38	1.85
6626805--6626831	3	9.0	3	100	0	54	66	0	33	0	0.92
6627060--6627144	43	2.0	43	88	0	125	28	21	7	43	1.78
6627584--6627608	13	1.9	13	100	0	50	32	16	20	32	1.94
6628706--6628769	17	3.5	18	76	14	60	57	0	1	40	1.08
6628755--6628807	19	2.7	19	80	8	63	43	3	0	52	1.19
6643653--6643717	6	10.3	6	73	14	51	1	21	3	73	1.05
6645971--6646039	24	2.9	22	85	8	75	28	5	5	59	1.44
6647357--6647394	19	2.0	19	85	10	51	71	2	0	26	1.00
6648383--6648420	6	6.3	6	100	0	76	31	50	0	18	1.47
6651096--6651140	7	6.7	7	94	2	58	80	0	15	4	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6651095--6651140	13	3.5	13	80	16	58	80	0	15	4	0.86
6651095--6651140	6	7.0	6	90	9	56	80	0	15	4	0.86
6656993--6657074	24	3.4	24	91	0	137	21	20	20	36	1.95
6677170--6677478	106	2.9	106	86	1	429	36	20	15	27	1.93
6678083--6678108	4	6.5	4	100	0	52	76	0	0	23	0.78
6680712--6680747	19	1.9	18	88	5	54	58	2	0	38	1.13
6681120--6681214	47	2.0	47	89	4	147	31	16	4	47	1.66
6687033--6687086	7	7.7	7	93	0	90	24	0	0	75	0.80
6687083--6687136	24	2.2	24	76	0	63	37	1	0	61	1.07
6687094--6687150	24	2.3	24	87	3	78	35	0	1	63	1.05
6688551--6688638	45	2.0	45	90	0	140	31	26	18	23	1.97
6688649--6688826	51	3.5	50	76	3	180	31	28	16	24	1.96
6688643--6688865	101	2.2	100	77	8	236	30	28	14	26	1.95
6695585--6695639	18	3.1	18	79	12	51	49	0	0	50	1.00
6695580--6695633	13	4.1	13	81	11	56	46	0	1	51	1.11
6705551--6705592	22	1.9	22	85	0	57	52	7	9	30	1.61
6707672--6707717	24	1.9	24	86	8	67	47	4	6	41	1.49
6707683--6707734	24	2.2	24	82	6	61	50	3	3	42	1.39
6715440--6715511	36	2.0	36	89	2	110	27	30	18	23	1.97
6715629--6715799	48	3.6	47	90	7	258	30	28	7	32	1.85
6720121--6720222	43	2.4	43	98	1	197	21	15	36	26	1.93
6720204--6720277	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6720592--6720889	40	7.4	39	77	12	225	24	21	27	26	1.99
6720592--6720859	80	3.3	80	79	11	273	25	21	26	26	1.99
6720668--6720885	120	1.8	120	80	7	264	23	22	27	27	1.99
6724275--6724559	40	7.2	40	81	7	298	24	27	23	24	2.00
6724275--6724559	156	1.8	156	81	4	351	24	27	23	24	2.00
6724862--6724940	29	2.7	29	86	5	106	27	32	15	24	1.95
6724922--6725024	43	2.4	43	100	0	206	26	35	15	22	1.94
6726888--6726966	37	2.1	37	88	0	113	26	31	17	24	1.97
6727084--6727268	48	3.8	48	93	5	320	29	30	8	31	1.87
6727084--6727268	95	1.9	97	94	3	329	29	30	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189