genome.fa.s20.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  129  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37014275--37014322	24	2.0	24	84	8	62	37	2	0	60	1.09
37019583--37019630	23	2.1	23	88	0	69	27	20	14	37	1.92
37029961--37030024	34	1.9	32	84	12	85	34	3	39	23	1.71
37038036--37038073	20	1.9	20	88	0	58	60	0	5	34	1.19
37042057--37042095	12	3.2	12	85	0	51	20	23	5	51	1.67
37042359--37042491	50	2.7	50	80	0	131	20	29	22	27	1.98
37043154--37043273	56	2.1	56	98	0	231	45	9	23	22	1.81
37044730--37045231	49	10.4	49	93	3	767	34	8	28	28	1.87
37044730--37045236	96	5.3	95	91	3	763	34	8	28	28	1.86
37067871--37067910	17	2.4	17	91	8	64	32	0	2	65	1.06
37071820--37072016	62	3.0	68	74	18	216	41	3	5	49	1.42
37072891--37072929	21	1.9	21	94	5	71	30	25	10	33	1.89
37080149--37080185	15	2.4	16	86	13	51	40	0	8	51	1.32
37088216--37088261	21	2.3	20	78	14	51	32	6	15	45	1.71
37093435--37093495	29	2.1	29	90	0	95	34	13	31	21	1.91
37098636--37098694	21	2.9	19	75	18	57	25	1	5	67	1.20
37108863--37108887	12	2.1	12	100	0	50	60	0	24	16	1.36
37117115--37117157	15	2.7	16	85	7	52	65	16	0	18	1.28
37120621--37120662	9	4.6	9	85	5	57	9	7	0	83	0.81
37120622--37120671	26	1.9	26	84	8	66	14	6	0	80	0.90
37120628--37120671	18	2.4	18	76	3	52	15	4	0	79	0.89
37127483--37127521	19	2.1	19	95	0	69	41	25	5	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37131461--37131501	15	2.7	15	88	0	64	21	7	24	46	1.77
37133015--37133039	3	8.3	3	100	0	50	68	32	0	0	0.90
37136628--37136908	140	2.0	140	99	0	553	36	19	17	26	1.94
37140171--37140208	17	2.2	17	90	0	58	13	5	31	50	1.63
37150845--37150980	40	3.4	40	84	2	166	44	28	14	12	1.82
37152641--37152695	13	4.2	13	85	0	65	52	12	5	29	1.61
37165906--37165939	16	2.1	16	88	0	50	58	11	5	23	1.55
37167339--37167363	10	2.5	10	100	0	50	24	32	8	36	1.84
37172359--37172394	16	2.2	17	90	5	56	36	0	52	11	1.37
37184577--37184606	7	4.3	7	95	0	51	36	3	16	43	1.65
37189594--37189701	35	3.1	35	79	0	135	29	26	13	29	1.94
37193679--37193713	15	2.4	15	90	4	54	48	0	8	42	1.33
37199972--37200049	4	18.5	4	79	17	63	21	3	0	74	0.98
37199965--37200042	5	15.4	5	75	19	56	20	3	0	75	0.95
37199965--37200057	31	3.1	30	83	10	120	21	4	0	74	0.99
37201736--37201770	15	2.4	15	90	4	54	48	0	8	42	1.33
37213335--37213445	57	1.9	58	87	1	161	45	8	21	25	1.79
37215654--37215770	49	2.4	49	78	9	123	31	30	14	23	1.94
37216183--37216253	34	2.1	34	97	0	133	42	26	12	18	1.86
37219909--37219943	7	5.0	7	92	0	61	28	2	28	40	1.71
37221811--37221877	22	3.0	21	80	4	53	28	23	22	25	1.99
37221838--37221885	22	2.2	22	92	0	78	27	29	22	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37221853--37221927	22	3.4	22	80	10	73	32	33	17	17	1.93
37222110--37222167	22	2.6	22	80	0	71	31	24	24	20	1.98
37221639--37222208	287	2.0	288	85	3	774	29	20	22	27	1.98
37231497--37231521	13	1.9	13	100	0	50	0	12	0	88	0.53
37232488--37232520	6	5.5	6	92	0	57	81	3	0	15	0.80
37234227--37234308	21	4.0	20	78	9	67	73	2	6	18	1.15
37234244--37234308	29	2.3	28	84	10	87	73	0	7	18	1.06
37237720--37237749	14	2.1	14	93	0	51	46	13	0	40	1.43
37238551--37238592	17	2.5	17	96	0	75	14	23	38	23	1.92
37243110--37243161	27	1.9	27	96	0	95	13	25	32	28	1.93
37243213--37243264	27	1.9	27	96	0	95	13	25	32	28	1.93
37250037--37250088	27	1.9	27	96	0	95	13	25	32	28	1.93
37254628--37254655	14	2.0	14	100	0	56	64	0	0	35	0.94
37268272--37268321	3	16.7	3	100	0	100	66	0	0	34	0.92
37273379--37273424	22	2.2	21	85	11	60	32	6	2	58	1.36
37275926--37276082	77	2.0	77	98	0	305	33	16	15	34	1.91
37276388--37276417	15	2.1	15	93	6	53	40	0	0	60	0.97
37276766--37276816	26	1.9	27	84	4	68	72	0	5	21	1.05
37276766--37276822	25	2.2	27	81	6	64	73	0	5	21	1.02
37289078--37289108	14	2.2	14	100	0	62	29	12	19	38	1.89
37292403--37292454	24	2.2	24	89	0	77	55	9	1	32	1.43
37294370--37294421	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37295021--37295053	13	2.5	13	90	9	50	15	21	0	63	1.30
37295021--37295052	7	4.9	7	88	11	50	15	21	0	62	1.32
37295028--37295155	57	2.2	57	84	13	167	26	21	5	46	1.73
37303763--37303892	69	1.9	68	80	1	152	22	15	16	46	1.84
37308228--37308266	19	2.1	19	85	0	51	41	25	5	28	1.77
37310108--37310154	20	2.3	21	82	10	62	55	6	14	23	1.63
37310106--37310150	19	2.3	19	82	14	56	55	6	13	24	1.62
37318942--37318976	19	1.9	17	88	11	52	54	5	0	40	1.24
37326869--37326916	24	2.0	24	84	8	62	50	6	25	18	1.70
37326967--37327015	21	2.3	21	92	0	80	14	26	16	42	1.86
37326991--37327127	42	3.3	42	74	4	132	16	22	17	43	1.88
37327063--37327148	21	4.1	21	72	1	66	15	20	18	45	1.85
37333185--37333238	20	2.8	19	78	10	56	68	1	5	24	1.21
37339357--37339381	13	1.9	13	100	0	50	32	0	0	68	0.90
37339749--37339795	24	1.9	25	86	4	69	14	23	8	53	1.69
37346188--37346285	13	7.5	14	74	20	54	48	0	2	48	1.12
37346218--37346261	23	2.0	22	86	13	63	47	0	4	47	1.22
37346244--37346280	16	2.3	16	86	13	58	40	0	0	59	0.97
37349009--37349056	24	2.0	24	100	0	96	37	8	16	37	1.79
37349578--37349614	3	12.7	3	94	5	67	29	0	35	35	1.58
37349977--37350044	26	2.4	26	77	20	66	50	1	1	47	1.19
37352976--37353038	24	2.7	24	85	7	76	31	11	17	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37356089--37356119	16	1.9	16	93	0	53	41	9	0	48	1.36
37358050--37358080	15	2.1	15	93	0	53	16	0	0	83	0.64
37364197--37364289	28	3.3	28	79	5	82	36	20	15	27	1.92
37364555--37364612	26	2.2	26	96	0	107	22	24	17	36	1.95
37372609--37372988	210	1.8	210	85	0	544	30	20	10	39	1.86
37373218--37373318	21	4.9	20	72	6	69	28	11	25	33	1.91
37374144--37374223	40	2.0	41	90	2	126	31	10	27	31	1.89
37373213--37375078	932	2.0	931	97	0	3516	31	13	18	36	1.90
37375062--37375102	20	2.0	20	85	4	55	31	4	4	58	1.40
37376832--37376904	37	2.0	37	100	0	146	35	16	12	35	1.86
37390353--37390392	10	3.8	10	84	12	53	35	0	2	62	1.09
37394534--37394590	29	2.0	30	93	6	100	31	7	10	50	1.63
37406169--37406212	18	2.4	19	77	11	56	63	6	2	27	1.31
37406168--37406215	17	2.7	17	73	20	53	64	6	2	27	1.28
37406284--37406341	22	2.8	20	80	16	66	65	0	5	29	1.14
37406366--37406424	18	3.2	18	78	4	64	61	0	3	35	1.13
37406937--37406986	10	4.9	10	77	18	50	32	2	2	64	1.16
37410176--37410227	19	2.7	20	73	11	54	40	17	7	34	1.78
37410645--37410708	19	3.3	19	77	20	62	48	0	0	51	1.00
37411985--37412017	11	2.8	12	86	9	50	60	0	0	39	0.97
37433869--37433933	34	1.9	33	93	3	112	23	32	9	35	1.86
37440690--37441075	50	7.8	50	80	5	399	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37440692--37441075	98	3.9	97	79	3	437	26	21	29	22	1.99
37440696--37441116	197	2.1	197	93	0	718	27	21	28	22	1.99
37440746--37441022	147	1.9	146	82	4	351	27	22	28	22	1.99
37443571--37443628	28	2.1	28	96	0	107	22	8	15	53	1.69
37446694--37446731	3	12.7	3	100	0	76	0	34	0	65	0.93
37448400--37448441	22	2.1	19	86	13	57	52	0	2	45	1.13
37460471--37460501	9	3.6	9	95	4	55	93	6	0	0	0.35
37464194--37464270	27	2.7	29	78	11	97	32	15	14	37	1.88
37468321--37468369	3	16.3	3	79	8	55	34	0	4	61	1.15
37469169--37469260	37	2.4	39	78	20	104	41	1	23	33	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189