genome.fa.s20.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  139  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42293256--42293280	7	3.6	7	100	0	50	28	0	12	60	1.32
42293931--42293965	18	1.9	18	88	0	52	25	34	8	31	1.86
42294358--42294426	25	2.7	25	86	2	102	46	2	11	39	1.55
42294422--42294680	47	5.3	47	84	9	356	46	25	0	27	1.58
42294458--42294499	18	2.3	18	95	0	75	47	23	0	28	1.52
42294476--42294719	29	8.2	29	77	14	246	45	27	0	26	1.60
42294429--42294709	76	3.7	76	82	9	392	45	26	0	27	1.59
42294611--42294651	18	2.3	18	91	0	64	51	19	0	29	1.47
42294422--42294722	152	2.0	152	95	0	539	45	26	0	27	1.58
42294717--42294853	55	2.5	55	98	0	265	37	12	5	44	1.64
42294826--42294860	18	1.9	18	94	0	61	37	8	2	51	1.47
42294717--42294963	55	4.3	54	79	16	257	37	10	5	46	1.62
42294882--42294908	10	2.7	10	100	0	54	40	7	0	51	1.30
42294947--42294971	10	2.5	10	100	0	50	44	8	0	48	1.32
42294826--42294971	65	2.2	66	85	6	190	38	8	4	47	1.56
42298078--42298425	122	2.8	123	93	1	592	32	21	16	29	1.95
42301208--42301270	5	12.6	5	82	0	81	25	34	0	39	1.56
42301208--42301270	15	4.2	15	89	0	99	25	34	0	39	1.56
42302169--42302618	51	8.9	51	76	4	349	29	24	14	30	1.95
42302169--42302619	102	4.4	102	86	1	532	29	24	14	30	1.95
42304931--42304966	18	1.9	19	88	5	56	33	22	0	44	1.53
42305354--42305444	47	1.9	48	82	6	114	36	20	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42306492--42306539	5	9.6	5	81	0	60	25	33	0	41	1.55
42306495--42306538	15	2.9	15	86	0	70	25	36	0	38	1.56
42306492--42306543	20	2.6	20	87	0	68	25	32	0	42	1.55
42307446--42307886	51	8.7	51	76	7	317	30	24	14	30	1.94
42307446--42307887	102	4.4	102	86	1	550	30	24	14	30	1.94
42315161--42315202	20	2.0	21	86	4	59	80	7	0	11	0.88
42320859--42320906	23	2.1	23	96	0	87	35	4	22	37	1.74
42321148--42321201	6	8.5	6	82	11	63	77	1	5	14	1.03
42321148--42321201	21	2.8	18	76	15	54	77	1	5	14	1.03
42321279--42321362	42	2.0	42	83	0	105	30	14	30	23	1.94
42322414--42323053	44	14.5	43	76	6	523	27	17	25	29	1.97
42322414--42323053	132	4.8	130	87	3	755	27	17	25	29	1.97
42323020--42323162	44	3.2	45	66	6	112	30	26	23	19	1.98
42323030--42323252	88	2.5	88	91	0	356	28	26	24	20	1.99
42323304--42323889	132	4.4	132	93	0	942	28	18	23	30	1.97
42323611--42323801	44	4.3	44	70	5	125	27	18	24	29	1.98
42324103--42324147	19	2.4	19	85	7	56	77	4	0	17	0.92
42327037--42327095	30	2.0	29	84	15	77	59	6	13	20	1.57
42346315--42346444	42	3.1	42	77	11	131	31	13	20	34	1.91
42346325--42346472	43	3.5	42	81	4	172	29	15	21	33	1.94
42346795--42346841	21	2.3	20	85	3	58	2	44	17	36	1.60
42347839--42347868	15	1.9	16	93	6	53	23	16	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42348799--42348838	20	2.0	20	90	0	62	27	10	12	50	1.72
42348784--42348851	34	2.0	35	91	2	111	32	8	13	45	1.74
42350505--42350766	27	9.6	27	82	3	301	40	23	17	18	1.91
42350505--42350766	109	2.4	109	85	1	357	40	23	17	18	1.91
42350505--42350784	82	3.4	80	85	4	355	39	22	18	19	1.92
42350792--42350840	25	1.9	25	83	4	62	26	18	20	34	1.95
42350966--42351021	26	2.2	26	86	0	76	10	19	35	33	1.87
42351014--42351164	32	4.8	32	79	4	171	19	21	23	36	1.95
42351009--42351164	63	2.5	64	87	1	224	18	21	23	36	1.95
42360665--42360725	25	2.4	25	80	0	68	26	16	16	40	1.89
42366148--42366372	40	5.7	40	86	5	278	25	28	22	24	2.00
42366150--42366372	119	1.9	120	84	6	301	25	27	22	24	2.00
42374014--42374238	40	5.7	40	86	5	278	25	28	22	24	2.00
42374016--42374238	119	1.9	120	84	6	301	25	27	22	24	2.00
42375363--42375482	56	2.1	56	98	0	231	22	23	9	45	1.81
42377715--42377776	23	2.7	23	82	9	81	40	27	3	29	1.72
42380779--42380846	22	3.0	23	72	20	79	36	5	11	45	1.65
42380765--42380843	22	3.5	23	72	19	76	35	6	12	45	1.68
42384351--42384451	40	2.5	40	88	1	148	24	21	17	35	1.95
42385938--42385975	19	2.0	20	90	10	62	36	5	0	57	1.21
42390458--42390501	16	2.8	15	83	10	52	47	0	11	40	1.39
42390429--42390500	32	2.3	31	85	9	92	43	0	12	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42391244--42391386	40	3.6	39	77	11	146	18	27	18	34	1.95
42393442--42393731	50	5.7	50	83	2	312	25	22	29	23	1.99
42396814--42396890	20	3.8	20	70	13	59	14	25	20	38	1.91
42399177--42399266	24	3.8	24	77	5	92	18	15	16	48	1.81
42401442--42401484	19	2.2	20	88	12	63	18	4	2	74	1.10
42406497--42406539	13	3.2	13	84	12	59	62	6	4	25	1.40
42413129--42413168	14	2.9	14	88	11	64	67	7	10	15	1.41
42413129--42413168	13	2.9	13	92	7	62	67	7	10	15	1.41
42425678--42425736	31	2.0	29	83	6	73	54	5	3	37	1.39
42429451--42429493	21	2.0	22	86	4	61	9	25	2	62	1.37
42439320--42439436	62	1.9	60	82	5	146	49	4	4	41	1.42
42442657--42442927	41	6.5	40	76	10	197	21	16	26	35	1.95
42442646--42442927	125	2.3	123	80	9	313	23	16	25	35	1.95
42442658--42442931	84	3.3	84	89	1	399	21	17	25	34	1.95
42444909--42444954	16	2.9	16	84	12	51	39	4	0	56	1.19
42449459--42449517	28	2.1	28	93	0	100	27	8	30	33	1.86
42457267--42457444	27	6.6	27	83	3	205	26	15	28	29	1.96
42457268--42457423	82	1.9	81	88	3	233	26	15	28	29	1.96
42457264--42457444	82	2.2	81	83	2	229	27	15	27	29	1.96
42465448--42465625	27	6.6	27	83	3	205	26	15	28	29	1.96
42465449--42465604	82	1.9	81	88	3	233	26	15	28	29	1.96
42465445--42465625	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42485113--42485227	48	2.4	48	89	2	171	50	0	7	41	1.31
42488382--42488565	40	4.6	40	82	6	196	23	20	27	28	1.99
42488382--42488562	80	2.3	81	83	9	221	23	20	27	27	1.99
42488463--42488612	40	3.8	38	80	8	122	24	22	28	24	1.99
42496252--42496435	40	4.6	40	82	6	196	23	20	27	28	1.99
42496252--42496432	80	2.3	81	83	9	221	23	20	27	27	1.99
42496333--42496482	40	3.8	38	80	8	122	24	22	28	24	1.99
42507795--42507894	50	2.0	50	96	0	182	23	17	25	35	1.95
42517100--42517144	22	2.0	22	82	4	54	55	15	11	17	1.68
42533355--42533405	23	2.2	23	89	6	77	29	9	19	41	1.84
42533732--42533770	20	2.0	20	90	10	62	15	23	5	56	1.59
42539635--42539733	40	2.5	40	88	0	144	39	24	18	18	1.92
42539636--42539772	40	3.4	40	84	4	134	39	23	18	18	1.92
42539821--42539919	40	2.5	40	84	1	135	25	20	26	28	1.99
42539811--42539919	41	2.7	41	82	1	139	24	20	25	29	1.99
42540254--42540290	14	2.6	14	95	0	65	21	0	29	48	1.50
42540338--42540371	14	2.3	15	90	5	52	35	0	29	35	1.58
42540526--42540618	7	13.3	7	76	8	64	11	0	50	37	1.39
42540528--42540603	21	3.6	21	77	5	82	7	0	53	38	1.30
42540528--42540610	14	5.9	14	72	9	71	8	0	53	38	1.32
42540731--42540770	7	5.6	7	90	3	62	17	0	55	27	1.43
42541331--42541624	147	2.0	147	90	6	463	41	12	13	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42542344--42542376	6	5.7	6	96	3	59	15	0	0	84	0.61
42543756--42543791	18	2.0	18	94	0	63	16	25	11	47	1.79
42544631--42544764	43	3.1	43	82	8	166	23	15	29	30	1.96
42544619--42544814	85	2.3	84	78	11	211	24	16	27	31	1.96
42545854--42546034	90	2.0	90	94	0	317	32	17	9	39	1.83
42546261--42546328	16	4.2	16	88	3	84	41	2	22	33	1.69
42546505--42546627	58	2.1	58	86	3	167	54	3	0	42	1.16
42546569--42546610	20	2.2	19	95	4	75	61	0	0	38	0.96
42552089--42552119	3	10.3	3	100	0	62	35	0	0	64	0.94
42556293--42556328	19	2.0	17	89	10	54	30	22	8	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189