genome.fa.s20.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  37  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11273480--11273567	45	1.9	46	83	2	115	50	9	12	28	1.71
11273476--11273576	45	2.3	43	80	10	112	52	7	11	27	1.66
11273840--11273918	34	2.3	34	80	4	88	1	21	2	74	1.01
11273870--11273912	15	2.7	15	89	7	59	0	16	4	79	0.90
11275709--11275826	62	1.9	63	89	1	184	30	5	22	42	1.75
11276750--11276784	15	2.4	14	90	9	61	42	31	5	20	1.75
11277388--11277627	127	1.9	126	82	9	301	33	12	17	36	1.87
11293823--11293847	9	2.8	9	100	0	50	20	0	0	80	0.72
11295408--11295482	16	4.6	16	71	12	62	14	1	6	77	1.04
11295408--11295482	6	12.5	6	80	14	59	14	1	6	77	1.04
11295398--11295456	5	11.0	5	79	16	57	16	1	5	76	1.05
11295475--11295532	22	2.7	20	71	21	53	18	10	5	65	1.41
11299631--11299745	41	2.8	41	85	2	140	16	22	18	42	1.89
11299636--11299762	21	6.1	21	67	5	78	14	24	20	40	1.89
11304797--11304875	38	2.1	38	100	0	158	45	31	2	20	1.64
11310469--11310509	13	2.8	15	75	17	50	58	2	0	39	1.11
11311184--11311242	31	1.9	31	82	6	75	28	3	3	64	1.26
11322973--11323061	37	2.4	37	92	0	151	42	14	7	34	1.75
11323104--11323179	33	2.3	33	93	0	134	43	14	6	35	1.71
11324236--11324444	92	2.3	91	86	5	278	45	3	3	46	1.39
11324372--11324419	26	1.9	25	84	16	64	45	0	2	52	1.12
11324461--11324495	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11324594--11324635	15	2.7	16	82	14	52	45	0	2	52	1.13
11324585--11324626	15	2.9	15	82	10	52	47	0	0	52	1.00
11324570--11324808	75	3.1	75	63	16	180	46	3	3	46	1.35
11324566--11324815	76	3.1	82	64	20	211	46	3	3	47	1.34
11324738--11324772	18	2.0	17	88	5	52	45	0	0	54	0.99
11324569--11324885	157	2.0	157	96	0	589	47	5	3	44	1.41
11325008--11325043	16	2.2	16	95	0	63	38	33	0	27	1.57
11328102--11328145	21	2.1	21	100	0	88	29	13	38	18	1.89
11335732--11335760	12	2.3	13	94	5	51	17	0	0	82	0.66
11337919--11337957	16	2.5	16	79	4	53	35	0	0	64	0.94
11338302--11338333	4	8.0	4	100	0	64	25	0	0	75	0.81
11339532--11339570	13	3.2	13	79	20	57	43	0	0	56	0.99
11342651--11343225	285	2.0	285	98	0	1105	25	14	26	33	1.94
11346848--11346892	20	2.3	19	88	3	63	75	2	20	2	1.01
11347803--11347911	37	2.8	39	77	9	114	26	17	23	32	1.97
11350375--11350458	25	3.2	25	64	23	64	40	26	14	19	1.89
11350356--11350460	54	1.9	54	100	0	210	40	23	16	19	1.90
11351831--11351929	23	4.3	23	89	5	155	32	23	21	23	1.98
11357485--11357573	45	2.0	45	97	0	169	34	25	12	26	1.92
11359237--11359335	23	4.3	23	87	5	146	31	23	21	24	1.98
11363501--11363536	17	2.1	17	94	0	63	52	5	0	41	1.24
11369550--11369614	31	2.1	31	91	0	103	41	6	15	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11379423--11379449	14	1.9	14	100	0	54	66	0	7	25	1.17
11383610--11383696	31	2.9	30	82	3	104	33	10	18	37	1.85
11384199--11384229	16	1.9	16	93	0	53	77	3	0	19	0.90
11384834--11384878	18	2.4	19	88	3	65	62	0	2	35	1.08
11387703--11387778	11	6.7	11	74	22	61	71	2	22	3	1.16
11389443--11389490	24	2.0	24	83	4	60	27	10	10	52	1.68
11391542--11391590	24	2.0	24	84	7	64	8	6	26	59	1.50
11396204--11396240	14	2.6	15	83	12	51	51	0	0	48	1.00
11398566--11398605	21	2.0	20	90	5	62	35	27	5	32	1.79
11400602--11400669	10	6.8	10	75	14	52	52	0	1	45	1.09
11400592--11400669	11	7.4	11	76	17	67	53	0	2	43	1.14
11400578--11400677	40	2.5	40	88	6	139	55	0	2	43	1.11
11400609--11400700	40	2.2	41	86	7	125	58	0	2	39	1.10
11401650--11401708	25	2.3	27	80	16	72	45	5	22	27	1.73
11404200--11404305	42	2.5	42	93	1	176	27	27	16	28	1.97
11406763--11406972	41	5.1	41	88	0	303	29	18	26	25	1.98
11407164--11407250	37	2.6	34	78	12	99	28	9	26	35	1.87
11407181--11407259	37	2.1	37	88	0	113	31	7	24	36	1.83
11414374--11414417	17	2.7	17	89	6	65	36	2	18	43	1.63
11414638--11414847	41	5.1	41	93	0	357	28	20	27	22	1.99
11415036--11415145	37	3.3	34	79	14	106	28	10	27	33	1.90
11415056--11415145	37	2.5	37	85	7	116	28	10	25	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11420600--11420632	13	2.4	14	85	5	50	51	0	6	42	1.26
11431952--11432109	43	3.7	43	84	6	187	33	24	18	23	1.97
11433918--11433942	11	2.3	11	100	0	50	28	0	0	72	0.86
11433977--11434034	25	2.4	24	76	21	66	44	0	3	51	1.18
11436822--11437175	186	1.9	186	89	2	550	30	16	18	34	1.94
11437008--11437266	126	2.1	126	88	1	385	29	16	17	35	1.93
11437339--11437414	34	2.2	35	88	9	120	50	11	1	36	1.48
11437508--11437542	15	2.3	15	90	0	52	57	34	0	8	1.29
11438316--11438349	17	1.9	18	88	5	52	64	2	2	29	1.22
11443214--11443273	30	1.9	32	83	6	79	46	1	3	48	1.28
11443280--11443348	26	2.7	25	77	6	75	71	4	20	4	1.21
11443329--11443371	15	2.8	14	80	19	50	74	0	25	0	0.82
11444071--11444095	11	2.3	11	100	0	50	36	0	8	56	1.29
11444502--11444541	20	2.0	20	95	0	71	42	10	20	27	1.83
11445523--11445661	58	2.4	58	87	2	190	38	8	28	24	1.85
11453149--11453187	17	2.2	18	86	4	53	28	7	17	46	1.76
11457236--11457304	33	2.1	33	91	0	111	33	11	7	47	1.67
11470278--11470338	31	2.0	31	90	0	95	40	6	6	45	1.56
11477970--11478007	19	2.0	20	90	10	62	44	2	0	52	1.14
11484250--11484279	12	2.5	12	88	0	51	23	0	16	60	1.36
11488080--11488112	17	2.1	17	88	11	52	27	0	0	72	0.85
11488627--11488680	21	2.6	21	82	2	56	25	1	31	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11488884--11488928	22	2.0	22	95	0	81	42	20	8	28	1.82
11501481--11501532	26	2.0	26	92	0	86	21	21	17	40	1.91
11503626--11503680	27	2.0	28	82	3	67	25	10	12	50	1.73
11514456--11514489	4	8.5	4	93	0	59	50	23	0	26	1.50
11514993--11515060	31	2.2	31	81	0	82	33	17	7	41	1.77
11524132--11524183	2	26.0	2	100	0	104	0	50	0	50	1.00
11525065--11525129	31	2.1	31	83	11	80	40	10	16	32	1.84
11526968--11527053	40	2.2	40	89	4	129	54	10	12	22	1.68
11527289--11527319	16	1.9	16	93	0	53	67	0	29	3	1.06
11539508--11539673	86	1.9	87	93	1	289	24	12	21	42	1.86
11546422--11546455	16	2.1	16	88	0	50	50	14	17	17	1.79
11549254--11549294	21	2.0	21	90	0	64	29	21	29	19	1.98
11551197--11551230	16	2.1	16	88	0	50	50	14	17	17	1.79
11561584--11561642	29	2.0	29	96	0	109	32	20	33	13	1.91
11565156--11565493	46	7.3	46	87	8	397	35	14	21	28	1.93
11565248--11565445	52	3.9	51	89	6	289	35	15	21	27	1.93
11565156--11565456	98	3.1	94	84	10	403	34	14	21	28	1.93
11565420--11565565	37	4.0	37	90	1	224	36	15	22	25	1.94
11565194--11565461	150	1.8	143	88	7	369	34	14	22	27	1.94
11567545--11567604	21	2.8	21	78	17	61	50	8	3	38	1.49
11568181--11568595	138	3.0	138	98	0	794	25	23	20	31	1.98
11573027--11573058	16	2.0	16	100	0	64	12	12	25	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11573172--11573413	45	5.4	45	95	0	403	38	15	19	27	1.92
11579185--11579412	117	2.0	113	81	7	264	41	9	4	44	1.57
11586208--11586236	15	1.9	15	100	0	58	41	0	13	44	1.44
11587324--11587364	21	2.0	21	85	0	55	12	9	19	58	1.61
11588093--11588131	16	2.5	16	88	12	55	69	0	28	2	1.02
11595397--11595454	27	2.1	27	83	6	71	58	0	3	37	1.15
11595731--11595766	2	18.0	2	100	0	72	0	50	0	50	1.00
11605813--11605855	20	2.2	20	84	8	54	25	4	2	67	1.22
11607135--11607159	3	8.3	3	100	0	50	64	36	0	0	0.94
11617660--11617753	43	2.2	43	98	0	179	36	28	8	26	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189