genome.fa.s20.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  36  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11014616--11014702	19	4.6	20	72	20	53	58	0	0	41	0.98
11014626--11014658	11	3.0	11	91	8	50	57	0	0	42	0.98
11014603--11014715	21	5.1	21	69	21	79	54	0	0	43	1.12
11014649--11014739	29	3.2	28	69	16	71	51	3	0	45	1.17
11014616--11014744	56	2.3	57	81	9	156	53	3	0	43	1.16
11015033--11015184	77	2.0	77	94	0	268	41	8	7	42	1.64
11029367--11029410	21	2.0	23	86	8	65	40	0	6	52	1.28
11038559--11038851	75	3.9	75	83	0	354	20	18	21	39	1.93
11038792--11038891	39	2.5	39	88	7	157	18	16	24	42	1.89
11038717--11038958	113	2.1	115	87	2	353	21	18	20	40	1.92
11043890--11043918	12	2.3	13	94	5	51	55	0	10	34	1.34
11045755--11046238	175	2.8	173	86	3	666	28	19	19	32	1.96
11045795--11046239	44	10.2	44	66	13	168	28	18	18	33	1.95
11045811--11046305	44	11.3	44	66	13	144	27	20	19	32	1.97
11046224--11046326	44	2.3	44	83	0	125	24	23	23	29	1.99
11052232--11052279	23	2.0	24	96	4	89	25	8	20	45	1.79
11058746--11058774	12	2.3	13	94	5	51	55	0	10	34	1.34
11061336--11061365	14	2.2	14	94	5	53	76	10	0	13	1.01
11061479--11061504	12	2.2	12	100	0	52	34	7	15	42	1.75
11061491--11061538	19	2.4	20	89	6	71	39	8	14	37	1.76
11061842--11061940	3	33.0	3	76	11	69	28	5	4	62	1.34
11062270--11062327	31	1.9	31	89	3	91	34	3	3	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11062268--11062347	28	2.8	27	79	5	70	33	3	5	57	1.38
11063509--11063825	169	1.9	168	86	2	456	24	21	23	30	1.99
11067112--11067651	132	4.1	132	91	0	893	28	15	27	29	1.96
11067112--11067653	265	2.0	264	93	1	924	28	14	26	29	1.96
11067112--11067664	44	12.5	45	77	6	497	28	15	26	30	1.96
11067698--11067836	44	3.2	44	63	11	113	27	29	23	19	1.98
11067645--11067951	88	3.5	88	94	0	515	29	28	23	19	1.98
11067153--11067778	265	2.4	264	84	5	647	29	17	26	27	1.98
11067959--11068171	44	4.8	44	84	3	268	28	17	25	28	1.97
11068958--11068983	12	2.2	12	100	0	52	34	7	15	42	1.75
11068973--11069017	19	2.2	20	88	7	65	40	6	15	37	1.74
11068975--11069046	23	3.3	23	83	11	80	40	5	16	37	1.72
11069051--11069089	3	13.0	3	88	0	60	30	2	2	64	1.21
11069412--11069469	31	1.9	31	89	3	91	34	3	3	58	1.32
11069410--11069489	28	2.8	27	79	5	70	33	3	5	57	1.38
11069615--11069655	4	10.5	4	80	15	50	24	0	2	73	0.96
11069615--11069651	18	2.1	18	89	0	56	24	0	2	72	0.97
11072510--11072548	17	2.3	17	86	0	60	25	10	17	46	1.80
11074900--11074963	31	2.1	30	85	2	83	26	1	7	64	1.30
11075977--11076046	27	2.5	28	79	11	81	32	1	0	65	1.01
11079023--11079062	21	2.0	21	90	5	64	70	5	0	25	1.08
11080320--11080369	12	4.1	12	78	12	57	56	0	4	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11080498--11080543	14	3.1	14	81	12	56	30	0	4	65	1.12
11081143--11082658	44	33.8	44	75	9	795	30	20	16	31	1.95
11081143--11082658	89	16.9	88	78	7	718	30	20	16	31	1.95
11081313--11082613	228	5.8	225	73	10	634	30	20	16	32	1.95
11081958--11082210	139	1.8	138	82	4	330	32	21	16	29	1.95
11081514--11082671	590	2.0	590	91	0	1888	29	20	16	32	1.95
11084671--11085035	192	1.9	192	94	0	649	36	25	13	24	1.92
11091778--11091820	15	2.7	16	85	10	61	67	0	0	32	0.91
11093944--11093982	18	2.2	18	90	9	62	35	20	15	28	1.93
11100390--11100440	20	2.6	20	81	3	59	25	19	0	54	1.44
11103709--11103739	15	2.1	15	100	0	62	32	19	12	35	1.90
11104221--11104280	28	2.1	28	90	0	93	55	6	30	8	1.55
11107302--11107351	24	2.1	24	96	0	91	36	12	22	30	1.90
11109256--11109297	22	1.9	22	90	0	66	30	16	30	21	1.95
11110095--11110126	3	10.7	3	100	0	64	68	0	0	31	0.90
11110994--11111139	49	3.0	49	86	3	177	34	26	12	26	1.92
11112667--11112833	23	7.3	23	79	0	199	31	24	20	23	1.98
11112667--11112833	46	3.6	46	85	0	244	31	24	20	23	1.98
11113051--11113089	18	2.2	17	86	13	53	46	20	0	33	1.51
11120659--11120708	17	2.7	20	78	18	70	10	0	44	46	1.37
11125286--11125335	17	2.7	20	78	18	70	10	0	44	46	1.37
11130699--11130775	29	2.5	31	87	4	104	46	12	14	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11141663--11141704	3	14.0	3	100	0	84	33	0	0	66	0.92
11152106--11152273	47	3.7	46	74	18	152	46	2	2	48	1.30
11152072--11152239	91	1.8	91	96	0	309	47	2	1	47	1.27
11152332--11152501	37	4.7	35	67	20	100	42	1	7	48	1.40
11152124--11152530	222	1.8	226	83	8	544	44	2	4	49	1.35
11152325--11152540	107	2.0	109	95	1	391	43	1	6	49	1.38
11152497--11152538	15	2.7	16	82	14	52	45	0	2	52	1.13
11152488--11152529	15	2.9	15	82	10	52	47	0	0	52	1.00
11152683--11152784	45	2.3	44	86	5	134	36	28	6	28	1.83
11154239--11154294	18	2.9	19	73	26	55	48	0	0	51	1.00
11154304--11154346	14	3.0	15	80	10	54	55	0	0	44	0.99
11154302--11154407	15	6.5	15	69	25	72	50	0	0	47	1.13
11157450--11157500	25	2.0	25	81	7	59	25	0	3	70	1.04
11159441--11159480	16	2.4	16	87	4	53	37	0	0	62	0.95
11166802--11166836	18	2.0	17	94	5	61	57	0	0	42	0.99
11167651--11167685	18	2.0	17	94	5	61	42	0	0	57	0.99
11169644--11169983	121	2.8	121	85	1	457	22	16	18	42	1.88
11182256--11182290	18	1.9	18	88	11	54	42	11	0	45	1.40
11189110--11189184	29	2.5	28	82	8	78	30	16	12	41	1.84
11189128--11189224	29	3.2	30	77	11	92	34	12	15	38	1.85
11191076--11191122	24	2.0	24	83	8	60	29	0	4	65	1.11
11192929--11192971	13	3.2	13	81	12	50	39	2	9	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11197459--11197528	31	2.3	31	87	0	104	44	11	11	32	1.76
11213360--11213392	17	1.9	17	93	0	57	24	15	3	57	1.52
11213850--11213887	3	12.7	3	100	0	76	65	0	0	34	0.93
11215981--11216005	7	3.6	7	100	0	50	88	0	0	12	0.53
11221501--11221560	30	2.0	30	86	3	84	21	45	0	33	1.52
11227343--11227367	9	2.8	9	100	0	50	24	0	16	60	1.36
11228971--11229018	24	2.0	24	83	0	60	62	8	4	25	1.41
11231206--11231245	9	4.4	9	90	0	62	45	20	7	27	1.78
11232566--11232643	39	2.0	39	100	0	156	23	12	25	38	1.90
11237029--11237062	12	2.8	12	90	0	50	44	8	0	47	1.34
11239909--11239955	13	3.7	13	74	5	51	40	2	17	40	1.61
11239909--11239960	25	2.1	25	100	0	104	42	3	15	38	1.65
11241241--11241283	19	2.3	19	80	8	52	74	4	20	0	1.00
11242294--11242353	24	2.5	22	84	10	66	40	11	5	43	1.63
11250534--11250569	18	2.0	18	100	0	72	44	27	16	11	1.82
11254109--11254138	2	15.0	2	92	0	51	46	0	0	53	1.00
11257523--11257657	67	2.0	67	86	2	191	34	8	17	38	1.81
11257642--11257706	34	1.9	33	84	9	87	36	7	13	41	1.74
11257787--11257828	18	2.4	17	96	4	75	45	0	0	54	0.99
11260073--11260139	31	2.2	31	82	12	77	38	13	16	31	1.87
11260648--11260707	29	2.1	28	84	9	77	25	50	0	25	1.50
11263862--11263900	17	2.4	17	86	4	53	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268754--11268993	127	1.9	126	82	7	299	34	12	16	36	1.87
11270986--11271936	44	22.6	42	73	16	308	22	21	23	33	1.97
11271031--11271941	84	10.9	84	92	1	1413	22	21	23	33	1.97
11272112--11272890	88	8.8	88	84	3	845	25	23	23	27	2.00
11272218--11272355	43	3.2	43	70	19	131	25	26	22	25	2.00
11272249--11272387	44	3.2	43	69	24	119	25	23	25	25	2.00
11272112--11272872	266	2.9	263	85	3	940	25	23	23	27	2.00
11272484--11272621	44	3.2	43	69	11	127	24	24	23	26	2.00
11272112--11272886	354	2.2	349	84	3	989	25	23	23	27	2.00
11273315--11273510	108	1.8	108	87	2	295	45	10	17	26	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189