genome.fa.s20.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  46  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13402671--13402829	84	1.9	84	84	7	216	32	28	17	22	1.96
13404629--13404673	23	1.9	23	90	4	72	68	8	11	11	1.39
13404691--13404780	43	2.1	43	97	0	171	18	15	5	60	1.55
13408298--13408337	21	1.9	21	89	0	62	32	2	2	62	1.22
13408768--13409005	101	2.4	101	84	4	293	31	25	16	26	1.96
13408763--13409033	101	2.7	97	75	12	249	30	25	15	28	1.96
13411194--13411234	22	2.0	21	90	9	66	70	7	7	14	1.31
13412871--13413330	50	9.3	50	65	5	151	26	23	19	30	1.98
13412970--13413623	50	13.2	49	65	7	316	25	23	20	30	1.98
13412897--13413676	99	7.9	99	93	0	1292	25	23	21	30	1.99
13425566--13425606	22	2.0	21	90	9	66	70	7	7	14	1.31
13436384--13436429	24	1.9	23	86	4	56	26	0	6	67	1.15
13446194--13446232	15	2.6	16	92	8	64	51	5	28	15	1.64
13447104--13447136	16	2.1	15	94	5	57	84	0	15	0	0.61
13447119--13447687	117	5.1	113	87	7	802	39	12	16	31	1.86
13447118--13447687	232	2.5	222	88	6	814	39	12	16	31	1.86
13447603--13447776	88	2.0	87	94	1	303	39	14	13	32	1.84
13447781--13448239	115	4.1	114	86	5	605	37	15	13	34	1.86
13448009--13448222	107	2.0	101	89	7	275	40	15	14	29	1.86
13449505--13449601	26	4.0	25	74	10	76	62	7	4	25	1.39
13449540--13449605	24	2.6	26	78	4	73	60	7	4	27	1.43
13449721--13449785	25	2.6	25	97	2	121	63	3	6	27	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13463582--13463647	30	2.2	30	82	10	82	57	6	4	31	1.43
13467284--13467344	29	2.1	29	81	6	70	44	6	4	44	1.51
13469804--13470084	46	6.6	46	77	17	320	34	14	20	29	1.93
13469840--13469994	36	4.0	36	78	15	175	36	15	20	28	1.93
13469804--13470040	82	2.9	82	94	0	420	35	14	20	29	1.92
13472195--13472306	59	1.9	59	81	7	138	40	4	2	52	1.36
13479838--13479880	16	2.7	16	80	20	54	44	0	34	20	1.52
13480832--13480869	18	2.1	18	95	0	67	0	55	0	44	0.99
13480929--13480978	25	2.0	25	88	0	73	4	30	4	62	1.32
13484306--13484358	15	3.2	15	80	17	52	54	1	1	41	1.22
13484389--13484427	20	2.0	20	94	0	69	48	0	2	48	1.15
13484526--13484565	20	2.0	20	90	0	62	50	12	10	27	1.72
13484514--13484580	34	1.9	35	90	3	109	46	13	8	31	1.74
13484549--13484588	14	2.9	14	84	0	53	42	17	7	32	1.77
13487490--13487517	3	9.3	3	100	0	56	32	0	0	67	0.91
13490142--13490175	15	2.1	17	89	10	54	41	47	0	11	1.40
13498522--13498586	20	3.3	20	80	8	71	50	6	1	41	1.36
13498598--13498640	9	4.6	9	80	8	50	72	2	0	25	0.97
13498591--13498655	29	2.4	27	85	10	87	64	1	1	32	1.12
13498606--13498647	19	2.3	19	84	12	52	66	2	2	28	1.16
13500095--13500122	10	2.8	10	100	0	56	57	0	32	10	1.33
13503479--13503513	5	6.8	5	87	6	52	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13503478--13503514	16	2.3	16	95	0	65	0	18	0	81	0.70
13505658--13505805	76	1.9	77	87	1	217	46	9	10	33	1.70
13518117--13518153	6	6.0	6	96	3	65	64	16	0	18	1.29
13519212--13519253	11	3.9	11	84	6	59	40	0	0	59	0.97
13519190--13519253	21	3.1	22	84	10	91	35	0	3	60	1.12
13519372--13519425	24	2.2	25	78	18	60	44	3	0	51	1.19
13519999--13520037	17	2.3	17	100	0	78	61	10	7	20	1.52
13520113--13520168	20	2.9	19	74	10	51	55	3	21	19	1.58
13524038--13524319	61	4.7	58	67	15	162	43	1	4	49	1.34
13524032--13524319	120	2.4	120	91	0	477	44	1	4	49	1.34
13524265--13524299	18	2.0	17	88	5	52	45	0	0	54	0.99
13524532--13524585	16	3.4	16	84	0	63	29	31	1	37	1.68
13526926--13526963	14	2.7	14	87	0	58	42	5	13	39	1.66
13526947--13526984	20	1.9	20	88	0	58	36	5	10	47	1.61
13527074--13527148	20	3.8	20	75	10	75	42	4	0	53	1.19
13529836--13529891	6	9.5	6	90	3	87	37	0	62	0	0.95
13529836--13529891	18	3.2	18	92	2	96	37	0	62	0	0.95
13532931--13533000	12	6.1	10	85	12	50	68	0	4	27	1.08
13532961--13533000	3	13.3	3	100	0	80	67	0	0	32	0.91
13535225--13535578	44	7.6	45	74	10	234	34	18	18	28	1.95
13535252--13535445	96	2.0	96	86	0	271	36	19	18	25	1.95
13535353--13535611	44	5.7	44	74	12	175	32	17	18	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13535400--13535582	96	1.9	96	84	2	242	34	16	16	32	1.92
13535208--13535611	140	2.9	139	80	4	438	34	18	18	28	1.94
13538806--13538891	26	3.3	27	66	26	76	18	18	11	51	1.76
13541331--13541408	42	1.9	40	89	5	120	39	17	14	28	1.89
13545399--13545444	17	2.7	17	79	0	56	39	0	0	60	0.97
13545420--13545495	40	1.9	40	100	0	152	32	2	0	64	1.07
13545477--13545515	20	2.0	20	89	0	60	38	2	0	58	1.12
13545476--13545533	20	2.8	20	80	17	57	41	1	3	53	1.28
13557801--13557859	22	2.7	22	79	10	59	57	10	13	18	1.64
13560943--13561000	30	1.9	30	92	0	98	10	31	39	18	1.85
13562642--13563175	229	2.3	227	78	7	562	30	18	23	26	1.98
13562645--13563181	115	4.7	115	73	9	400	30	18	24	27	1.98
13563241--13563279	21	1.9	20	89	5	60	20	0	35	43	1.52
13567781--13567839	22	2.7	22	79	10	59	57	10	13	18	1.64
13570923--13570980	30	1.9	30	92	0	98	10	31	39	18	1.85
13572626--13573155	229	2.3	227	78	7	554	30	18	24	26	1.98
13572622--13573161	115	4.7	115	73	9	399	30	18	24	27	1.98
13573221--13573259	21	1.9	20	89	5	60	20	0	35	43	1.52
13577143--13577400	36	7.2	36	81	7	186	50	12	1	36	1.49
13577162--13577400	27	8.9	26	88	5	176	50	12	1	35	1.48
13577164--13577396	63	3.7	63	97	0	421	49	12	1	36	1.49
13578933--13579007	21	3.4	21	75	10	69	38	18	40	2	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13578965--13579000	12	3.0	12	95	0	63	41	16	38	2	1.63
13579417--13579709	85	3.5	83	85	7	353	25	22	19	32	1.98
13579417--13579710	42	7.0	42	88	4	364	25	22	19	32	1.97
13579800--13579843	22	2.0	22	90	0	70	50	22	13	13	1.77
13582897--13584628	178	9.8	178	92	1	2814	28	24	17	30	1.97
13582897--13584628	267	6.5	267	92	2	2814	28	24	17	30	1.97
13582897--13584332	89	16.1	89	93	0	2408	28	24	17	30	1.97
13584253--13584407	75	2.1	75	96	0	283	31	23	18	27	1.97
13584351--13584603	44	5.7	44	81	4	312	28	22	16	32	1.96
13584328--13584628	89	3.4	89	93	1	523	28	22	17	30	1.97
13585888--13585929	13	3.2	13	86	10	50	14	19	0	66	1.25
13586865--13586904	19	2.1	19	90	0	62	67	7	12	12	1.41
13589273--13589307	17	2.1	16	89	5	52	45	20	17	17	1.85
13590996--13591051	25	2.2	26	83	6	78	44	3	10	41	1.56
13591854--13591906	26	2.0	26	96	0	97	24	18	13	43	1.86
13593386--13593423	18	2.2	18	90	4	60	63	10	5	21	1.46
13595919--13595961	19	2.3	18	80	11	50	34	9	0	55	1.32
13604453--13604499	15	3.1	15	90	0	58	55	0	10	34	1.35
13604467--13604499	12	2.8	12	95	0	57	57	0	9	33	1.30
13606042--13606410	87	4.3	87	74	12	242	27	20	20	31	1.98
13606082--13606410	44	7.6	42	73	13	192	26	20	21	31	1.98
13619081--13619127	15	3.1	15	90	0	58	55	0	10	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13619095--13619127	12	2.8	12	95	0	57	57	0	9	33	1.30
13621030--13621072	22	2.0	22	90	4	70	32	16	6	44	1.74
13621356--13621420	29	2.2	29	86	5	87	32	1	9	56	1.40
13625221--13625259	14	2.8	14	84	0	51	35	12	23	28	1.91
13625833--13625868	18	1.9	18	88	5	54	58	2	0	38	1.13
13625866--13625907	14	3.0	14	79	10	50	57	0	0	42	0.99
13625956--13626007	18	3.1	16	76	15	52	57	0	0	42	0.98
13628811--13628866	22	2.6	21	86	8	76	21	21	8	48	1.77
13630324--13630381	27	2.1	27	100	0	116	10	13	36	39	1.79
13630369--13630439	26	2.7	26	84	0	88	22	15	28	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189