genome.fa.s20.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  29  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9315141--9315177	14	2.4	17	86	13	53	48	0	0	51	1.00
9315327--9315377	14	3.6	14	74	7	50	68	0	13	17	1.21
9315366--9315399	16	2.1	16	88	5	50	76	5	14	2	1.09
9316270--9316346	27	3.1	25	78	14	70	38	0	24	36	1.56
9316270--9316327	23	2.5	24	80	11	66	39	0	24	36	1.55
9316490--9316585	39	2.5	39	80	6	108	20	23	28	27	1.99
9317483--9317545	19	3.0	21	77	11	67	36	7	17	38	1.79
9317724--9317768	23	2.0	23	81	0	54	22	0	15	62	1.33
9317923--9317960	20	1.9	20	88	0	58	36	0	0	63	0.95
9319650--9319694	20	2.1	22	88	8	67	46	2	6	44	1.42
9324345--9324393	21	2.3	22	78	3	55	65	2	0	32	1.04
9325454--9325515	26	2.4	25	81	7	63	33	6	3	56	1.41
9325462--9325517	25	2.2	25	78	12	60	37	5	3	53	1.41
9325562--9325699	59	2.3	59	86	2	188	39	12	10	36	1.78
9325562--9325727	59	2.8	59	81	5	167	39	12	10	37	1.79
9339140--9339180	13	3.2	13	85	0	55	56	0	0	43	0.99
9339149--9339205	25	2.3	24	84	3	69	56	0	3	40	1.17
9340571--9340622	25	2.1	25	100	0	104	34	19	3	42	1.69
9350084--9350476	166	2.4	166	90	0	599	30	22	23	24	1.99
9350967--9351003	14	2.7	14	88	12	51	13	0	32	54	1.40
9351043--9351092	22	2.3	22	82	6	66	18	8	40	34	1.79
9351333--9351385	21	2.5	21	78	6	63	22	0	24	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9351797--9351956	83	1.9	83	85	0	221	32	16	21	28	1.96
9351815--9351980	83	2.0	83	83	2	208	33	18	20	28	1.96
9352027--9352065	15	2.6	15	100	0	78	28	43	7	20	1.79
9353728--9353769	7	6.1	7	80	5	50	35	2	16	45	1.61
9353724--9353767	20	2.1	21	87	4	63	34	2	13	50	1.55
9354747--9354807	22	2.9	22	88	11	101	42	0	0	57	0.98
9354838--9354877	19	2.1	19	90	9	64	47	0	0	52	1.00
9354935--9355016	12	7.2	12	75	18	61	46	14	0	39	1.45
9354937--9355016	32	2.4	33	81	12	101	46	15	0	38	1.46
9355002--9355064	25	2.5	25	84	0	81	47	20	3	28	1.65
9355015--9355090	34	2.2	34	83	0	89	43	22	3	30	1.71
9354995--9355173	59	3.0	60	84	5	195	43	22	2	31	1.65
9355049--9355146	25	3.9	25	93	0	151	43	21	1	33	1.59
9355002--9355222	84	2.6	84	86	1	300	45	22	1	30	1.63
9355074--9355173	34	3.2	33	74	22	108	42	24	1	33	1.61
9354981--9355270	50	5.7	50	75	13	207	45	21	1	31	1.62
9355133--9355270	25	5.5	25	80	3	125	47	21	1	29	1.59
9355099--9355182	34	2.5	34	88	3	125	44	23	1	30	1.61
9355108--9355222	16	6.8	18	70	19	52	46	22	0	30	1.58
9355242--9355274	16	2.1	16	94	0	57	48	21	0	30	1.50
9357842--9357888	21	2.2	21	88	0	67	36	19	42	2	1.63
9357803--9357975	87	2.0	87	89	0	265	39	18	29	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9358478--9358595	42	2.7	43	80	8	141	28	20	26	24	1.99
9358562--9358746	43	4.3	43	89	0	246	26	21	23	28	1.99
9359095--9359136	22	1.9	22	95	0	75	59	0	0	40	0.97
9359095--9359154	22	2.7	22	80	10	61	63	0	0	36	0.95
9360749--9360781	17	1.9	17	93	0	57	54	0	9	36	1.32
9361046--9361094	20	2.5	20	83	6	57	44	2	0	53	1.12
9362116--9362276	35	4.7	35	76	8	150	48	10	11	29	1.72
9362117--9362256	17	8.2	17	77	12	128	48	10	11	29	1.73
9362116--9362281	17	9.5	17	75	12	115	48	10	12	28	1.73
9362453--9362499	20	2.5	19	77	16	53	44	8	17	29	1.78
9362859--9362945	8	11.9	7	83	9	95	0	19	0	80	0.71
9362859--9362951	15	6.1	15	83	7	107	0	20	0	79	0.73
9362859--9362946	22	4.0	22	80	11	99	0	19	0	80	0.71
9362859--9362949	23	4.0	22	77	16	80	0	19	0	80	0.72
9363038--9363095	15	3.7	15	82	13	64	1	13	17	67	1.32
9363035--9363128	16	5.8	16	74	11	68	2	11	21	64	1.36
9363238--9363272	3	11.3	3	93	6	61	0	31	0	68	0.90
9363234--9363272	13	3.1	13	96	3	71	0	30	0	69	0.89
9363346--9363375	10	3.0	10	95	0	51	0	26	0	73	0.84
9363624--9363738	30	3.9	29	79	5	115	45	3	21	29	1.68
9363639--9363738	30	3.4	30	83	5	116	45	4	22	29	1.70
9363734--9363768	14	2.4	15	90	4	54	28	0	2	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9364010--9364212	54	3.8	52	85	10	270	35	18	16	30	1.93
9364207--9364233	14	1.9	14	100	0	54	59	0	18	22	1.38
9364174--9364553	176	2.2	169	85	7	487	35	19	17	28	1.94
9364171--9364553	85	4.4	86	78	14	378	34	19	18	27	1.95
9364466--9364499	16	2.1	16	88	0	50	64	5	11	17	1.45
9364518--9365509	190	5.2	192	97	1	1870	35	20	13	29	1.91
9365335--9365509	69	2.5	71	84	3	205	33	22	13	30	1.93
9373682--9373825	17	8.4	17	77	8	130	47	10	11	30	1.74
9373683--9373849	17	9.5	17	78	12	128	49	10	11	28	1.72
9373682--9373844	35	4.7	35	80	6	179	47	10	11	30	1.73
9373803--9374225	218	1.9	217	80	9	477	37	11	12	38	1.80
9374021--9374067	20	2.5	19	77	16	53	44	8	17	29	1.78
9374428--9374505	7	10.7	7	77	11	77	0	19	0	80	0.71
9374437--9374503	22	3.1	21	77	12	73	0	20	0	79	0.74
9374425--9374494	30	2.4	30	87	2	97	0	20	0	80	0.72
9374426--9374507	23	3.6	23	80	9	89	0	20	0	79	0.74
9374428--9374505	15	5.3	15	82	8	81	0	19	0	80	0.71
9374600--9374650	13	3.6	14	81	7	50	3	11	19	64	1.41
9374794--9374831	3	12.3	3	94	5	67	0	31	0	68	0.90
9374902--9374931	10	3.0	10	95	0	51	0	26	0	73	0.84
9375195--9375296	30	3.4	30	82	2	116	43	4	23	28	1.74
9375292--9375326	14	2.4	15	90	4	54	25	0	2	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9377697--9377759	29	2.2	29	85	5	83	30	4	17	47	1.68
9377997--9378037	19	2.2	19	86	0	55	63	2	2	31	1.20
9384813--9384845	17	1.9	17	93	0	57	78	6	0	15	0.93
9385682--9385722	18	2.2	19	86	4	57	26	2	2	68	1.15
9389804--9389828	13	1.9	13	100	0	50	68	24	0	8	1.16
9390284--9390496	15	14.1	15	75	3	178	28	26	21	23	1.99
9397917--9397973	30	1.9	30	96	0	105	26	31	24	17	1.97
9400775--9400815	18	2.2	20	86	8	59	19	0	14	65	1.26
9402887--9403040	60	2.6	60	85	4	186	29	20	20	28	1.98
9402826--9403047	15	14.8	15	73	1	131	30	22	21	26	1.98
9402945--9403064	60	2.0	58	82	9	143	28	16	25	29	1.97
9407093--9407211	62	1.9	61	96	1	220	22	15	26	35	1.94
9414287--9414416	22	6.0	22	74	4	120	44	17	21	16	1.86
9414291--9414424	44	3.0	43	85	4	178	44	17	22	15	1.87
9424057--9424109	22	2.4	22	84	6	72	33	32	0	33	1.58
9424141--9424199	30	2.0	28	90	6	91	40	0	1	57	1.09
9424144--9424206	28	2.2	30	82	5	76	41	0	1	57	1.08
9424289--9424322	15	2.3	15	95	5	61	29	0	5	64	1.17
9426120--9426175	24	2.3	24	96	0	103	28	33	17	19	1.95
9426534--9427703	29	42.1	28	76	12	897	43	23	0	32	1.58
9426507--9427630	23	42.0	23	69	24	240	43	23	0	32	1.58
9426477--9427703	137	9.1	137	73	17	593	43	24	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9427039--9427119	28	2.6	32	81	11	89	40	23	0	35	1.55
9426534--9427703	285	4.2	278	77	14	534	43	23	0	32	1.58
9427401--9427499	37	2.7	38	80	7	116	43	26	0	30	1.55
9427518--9427643	28	4.8	23	68	26	72	46	19	0	33	1.55
9427505--9427703	23	7.4	23	67	27	92	44	25	0	30	1.58
9430909--9431178	125	2.2	125	91	4	447	31	22	16	29	1.96
9431401--9431454	29	1.9	27	88	7	81	37	16	16	29	1.91
9451442--9451479	19	2.0	20	89	5	60	60	7	21	10	1.54
9454047--9454529	45	10.8	45	78	3	404	27	23	17	31	1.97
9453908--9454529	90	7.0	89	78	6	471	27	23	17	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189