genome.fa.s20.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  154  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46266048--46266422	187	2.0	188	87	0	536	27	21	19	31	1.97
46267803--46267851	8	5.9	8	76	9	53	10	2	4	83	0.85
46267819--46267852	9	3.8	9	85	14	52	11	0	0	88	0.52
46267814--46267853	18	2.3	17	86	4	62	10	0	5	85	0.75
46270526--46270579	24	2.2	25	86	3	74	46	5	22	25	1.73
46292245--46292297	23	2.4	22	76	20	56	9	18	1	69	1.25
46294886--46294918	17	1.9	17	93	0	57	90	0	9	0	0.44
46294888--46294914	11	2.5	11	100	0	54	92	0	7	0	0.38
46295003--46295043	19	2.3	19	87	8	59	63	0	0	36	0.95
46295001--46295058	22	2.5	23	75	13	57	56	1	0	41	1.09
46295456--46295518	30	2.1	30	93	0	108	57	11	3	28	1.49
46297889--46297930	21	2.0	21	100	0	84	42	28	4	23	1.74
46299531--46299580	21	2.4	21	83	6	57	30	2	2	66	1.14
46299682--46299720	13	3.1	12	85	10	51	41	0	2	56	1.13
46299731--46299790	26	2.3	26	83	13	72	28	5	5	61	1.38
46299728--46299790	25	2.5	26	82	12	78	28	4	4	61	1.36
46304774--46304823	23	2.2	23	85	7	66	68	0	20	12	1.21
46306121--46307095	44	22.2	43	66	17	234	27	18	24	30	1.98
46306115--46307246	132	8.6	131	90	1	1624	27	18	24	29	1.98
46308850--46308874	13	1.9	13	100	0	50	40	0	4	56	1.18
46308892--46308951	26	2.3	26	83	13	72	28	5	5	61	1.38
46308889--46308951	25	2.5	26	82	12	78	28	4	4	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46312973--46313009	18	2.1	18	100	0	74	16	18	21	43	1.88
46314893--46314931	5	7.6	5	82	5	51	79	2	17	0	0.84
46314893--46314940	16	3.0	16	90	6	71	79	2	18	0	0.84
46315884--46316257	45	8.4	45	78	9	347	25	15	27	31	1.96
46315940--46316267	134	2.4	134	81	8	348	25	16	25	32	1.96
46316252--46316887	85	7.4	84	72	10	410	32	19	20	27	1.97
46316298--46316887	129	4.6	129	90	1	860	32	19	20	27	1.97
46316298--46316887	257	2.3	257	89	0	883	32	19	20	27	1.97
46316298--46317006	257	2.8	255	84	4	872	33	19	19	28	1.96
46316951--46317099	44	3.2	44	66	15	129	33	16	20	29	1.94
46316941--46317163	95	2.3	95	94	0	392	32	17	19	30	1.95
46316941--46317194	95	2.7	95	89	3	334	31	18	19	30	1.96
46317132--46317222	44	2.1	44	87	4	130	31	21	20	25	1.98
46318906--46318945	9	4.6	9	84	6	55	22	2	7	67	1.28
46318915--46318948	17	2.0	17	100	0	68	17	5	5	70	1.28
46322429--46322454	13	2.0	13	100	0	52	38	0	38	23	1.55
46333573--46333606	15	2.4	14	90	9	59	82	0	0	17	0.67
46334010--46334245	44	5.1	44	74	15	217	31	18	22	27	1.97
46333884--46334306	142	3.0	142	92	0	684	33	17	20	28	1.95
46334167--46334278	44	2.5	44	80	5	120	31	19	19	29	1.97
46339470--46339624	58	2.7	54	79	11	168	41	1	2	54	1.25
46341229--46341255	5	5.4	5	100	0	54	18	59	22	0	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46341657--46341702	22	2.1	21	84	4	56	36	8	2	52	1.45
46346086--46346114	12	2.5	12	94	5	51	41	0	34	24	1.55
46356896--46356985	44	2.0	44	95	0	162	27	21	21	30	1.98
46357825--46357859	10	3.3	10	88	11	52	85	0	11	2	0.69
46357830--46357859	12	2.6	11	94	5	51	90	0	10	0	0.47
46364975--46365113	29	4.7	29	71	7	118	23	10	28	38	1.87
46364973--46365113	59	2.4	59	80	3	167	23	9	27	39	1.86
46364973--46365139	60	2.8	59	81	2	165	22	10	26	40	1.87
46365120--46365229	53	2.1	52	81	6	125	23	18	17	40	1.90
46368065--46368111	24	2.0	24	83	8	60	48	10	4	36	1.57
46375851--46375885	14	2.5	13	86	13	52	74	0	5	20	1.02
46386896--46386933	20	1.9	20	88	0	58	28	21	15	34	1.94
46395433--46395737	152	2.0	152	87	1	432	25	22	18	33	1.96
46399055--46399097	23	2.0	21	81	9	50	44	6	2	46	1.43
46402529--46402576	18	2.5	20	86	13	73	72	6	2	18	1.15
46407350--46407374	5	5.0	5	100	0	50	80	0	0	20	0.72
46408337--46408376	21	1.9	21	89	0	62	15	22	15	47	1.82
46410082--46410290	105	2.0	105	98	0	400	33	21	9	35	1.85
46420501--46420690	62	3.0	62	96	3	337	35	10	24	29	1.89
46420625--46420870	46	5.4	46	96	0	442	34	12	23	30	1.92
46422129--46422273	49	2.9	49	90	1	209	25	15	27	31	1.95
46423128--46423264	22	6.0	24	75	8	108	51	8	18	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46423139--46423284	69	2.1	69	83	3	179	54	8	18	19	1.68
46423181--46423284	22	4.6	22	72	11	77	56	8	16	18	1.64
46428067--46428093	4	6.8	4	100	0	54	77	0	0	22	0.76
46429206--46429249	11	3.8	11	80	11	52	31	0	4	63	1.14
46431227--46431387	33	4.8	32	69	8	124	31	14	24	28	1.95
46431161--46431399	101	2.4	101	93	0	415	32	15	23	28	1.95
46431393--46431443	24	2.1	24	88	0	75	47	3	23	25	1.69
46432512--46432567	29	1.9	29	85	7	78	62	3	10	23	1.43
46432952--46432984	5	6.8	5	93	6	59	81	0	0	18	0.68
46433723--46433768	13	3.7	12	82	8	56	78	4	6	10	1.08
46434888--46434921	17	2.0	17	100	0	68	35	29	0	35	1.58
46435030--46435074	23	1.9	23	82	13	56	22	6	22	48	1.73
46435264--46435297	13	2.6	13	95	0	59	8	26	38	26	1.85
46439143--46439242	41	2.4	41	90	3	148	27	20	26	27	1.99
46447238--46447280	21	2.0	21	86	4	59	20	2	25	51	1.60
46447633--46447675	17	2.5	17	88	0	59	18	13	27	39	1.89
46448899--46448953	23	2.5	21	77	13	56	56	1	10	30	1.44
46449251--46449286	3	12.0	3	100	0	72	66	0	0	33	0.92
46454772--46454865	41	2.3	41	86	0	134	23	26	19	30	1.98
46462326--46462501	41	4.3	41	91	0	280	23	27	19	29	1.98
46462332--46462501	82	2.1	82	98	0	331	23	28	18	29	1.98
46464140--46464287	79	1.9	79	88	0	224	27	10	18	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46466002--46466075	24	3.3	23	74	14	73	54	2	4	39	1.34
46466012--46466054	17	2.4	19	88	11	65	55	0	0	44	0.99
46466030--46466080	26	1.9	27	84	11	70	54	3	1	39	1.30
46467792--46467900	54	2.0	54	94	0	191	29	17	33	20	1.95
46470375--46470433	22	2.7	22	100	0	118	8	22	23	45	1.79
46470528--46470810	43	6.6	43	79	6	236	32	24	17	25	1.96
46470722--46470810	42	2.1	42	83	8	110	37	26	13	22	1.91
46475904--46475947	20	2.2	20	88	12	63	36	45	0	18	1.49
46475937--46476066	61	2.1	63	82	5	158	44	25	1	28	1.63
46476153--46476186	14	2.3	15	90	5	52	32	29	0	38	1.58
46476511--46476548	19	2.0	20	84	5	51	65	5	5	23	1.34
46476621--46476796	39	4.4	40	86	5	198	19	22	21	36	1.95
46476635--46476790	39	4.0	40	90	2	219	20	23	22	33	1.97
46476635--46476790	79	2.0	79	86	5	217	20	23	22	33	1.97
46483071--46483132	29	2.2	27	75	18	65	40	6	4	48	1.50
46486335--46486384	9	5.6	9	87	0	73	40	26	8	26	1.83
46486335--46486392	18	3.2	18	90	0	80	41	25	6	25	1.80
46486335--46486392	9	6.4	9	85	0	71	41	25	6	25	1.80
46486334--46486392	27	2.2	27	87	0	91	42	25	6	25	1.79
46497013--46497074	32	1.9	32	86	0	88	37	9	16	37	1.81
46497955--46498008	22	2.5	22	87	0	72	16	27	24	31	1.96
46497959--46498020	22	2.8	22	80	4	63	16	29	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46498878--46498960	32	2.5	33	80	5	114	30	7	15	46	1.73
46504356--46504407	27	1.9	27	84	0	68	11	17	5	65	1.44
46507318--46507355	17	2.2	18	85	4	51	26	7	15	50	1.72
46507524--46507605	42	2.0	42	90	0	128	40	10	20	28	1.86
46524364--46524399	16	2.2	16	100	0	72	30	16	19	33	1.94
46524848--46524941	42	2.2	43	86	5	129	24	27	3	44	1.69
46529116--46529261	37	3.9	36	72	18	113	41	1	4	52	1.31
46534478--46534519	17	2.5	16	82	17	50	4	26	0	69	1.08
46538750--46538806	13	4.6	13	74	12	57	1	17	0	80	0.79
46549134--46549994	434	2.0	434	94	0	1526	26	18	20	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189