genome.fa.s20.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  72  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20011451--20011486	16	2.2	17	90	5	56	44	8	0	47	1.33
20011612--20011645	14	2.3	15	90	5	52	47	0	0	52	1.00
20013525--20013639	43	2.7	43	76	15	128	30	28	16	24	1.96
20026112--20026231	43	2.8	43	78	7	127	50	21	18	10	1.76
20026446--20026604	81	1.9	83	92	2	268	37	15	22	25	1.93
20030803--20030855	25	2.0	26	82	13	65	1	20	0	77	0.87
20030813--20030855	20	2.2	20	83	8	52	0	23	0	76	0.78
20032198--20032363	44	3.9	44	71	12	114	31	25	17	25	1.97
20036734--20036782	6	7.8	6	79	6	53	46	16	18	18	1.84
20036760--20036911	45	3.4	45	89	0	232	42	19	17	20	1.90
20037311--20037360	25	2.0	25	84	11	66	36	22	0	42	1.54
20038359--20038429	5	13.8	5	72	21	58	60	1	0	38	1.06
20038360--20038427	3	25.0	3	70	24	53	61	1	0	36	1.05
20038360--20038429	8	9.0	8	78	12	83	61	1	0	37	1.05
20039403--20039440	18	2.1	18	95	0	67	34	5	13	47	1.65
20040301--20040339	20	2.0	20	85	14	55	2	25	5	66	1.25
20042775--20043085	165	1.9	160	84	7	412	39	13	12	34	1.83
20045052--20045080	2	14.5	2	100	0	58	0	0	48	51	1.00
20058453--20058525	11	6.7	10	75	16	65	21	28	0	49	1.50
20058453--20058525	22	3.3	21	87	9	101	21	28	0	49	1.50
20058453--20058536	23	3.8	22	78	10	91	23	28	0	47	1.52
20059642--20059666	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20060164--20060220	30	1.9	30	88	0	87	33	40	12	14	1.83
20060313--20060355	18	2.4	18	88	0	59	18	27	9	44	1.80
20060775--20060847	34	2.1	34	97	0	137	39	4	5	50	1.44
20060791--20060859	34	2.2	32	82	12	81	46	4	8	40	1.55
20060812--20061016	61	3.5	61	75	13	230	42	4	5	46	1.49
20063147--20063436	124	2.3	125	92	1	465	28	21	17	32	1.96
20063478--20063778	96	3.1	97	85	2	392	41	16	2	39	1.63
20067919--20067967	20	2.5	20	96	0	89	28	40	4	26	1.74
20069925--20069978	27	2.1	26	93	6	92	46	24	22	7	1.77
20090522--20090563	18	2.3	18	95	0	75	52	11	4	30	1.59
20092560--20092759	43	4.7	43	91	0	319	31	31	16	21	1.95
20092561--20092759	86	2.3	86	95	0	353	31	30	16	21	1.95
20093450--20093480	4	7.8	4	100	0	62	51	22	0	25	1.48
20096696--20096776	14	5.7	15	72	15	55	35	39	0	24	1.56
20096729--20096769	21	2.0	20	90	4	64	39	39	0	21	1.54
20096710--20096776	28	2.3	29	82	2	82	35	38	0	25	1.56
20096820--20096872	21	2.7	20	85	8	65	54	18	15	11	1.70
20097279--20097470	102	1.9	102	92	0	321	24	24	23	27	2.00
20097399--20097570	72	2.4	72	91	0	281	25	24	23	26	2.00
20097477--20098144	114	5.9	113	86	1	917	27	25	20	26	1.99
20098037--20098193	73	2.2	72	85	1	215	23	23	22	29	1.99
20099507--20099536	7	4.3	7	95	0	51	36	0	30	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20099507--20099784	51	5.5	50	90	1	412	31	14	25	29	1.94
20104882--20104947	33	2.0	33	100	0	132	12	27	18	42	1.85
20106367--20106426	18	3.4	18	64	13	52	43	6	10	40	1.64
20106754--20107136	120	3.2	120	98	0	739	44	2	5	48	1.39
20107085--20107119	18	2.0	17	88	5	52	45	0	0	54	0.99
20107284--20107374	45	2.0	45	85	2	121	37	28	6	27	1.82
20107355--20107423	16	4.2	16	92	3	120	36	37	1	24	1.65
20107355--20107423	33	2.1	32	94	2	120	36	37	1	24	1.65
20107670--20107704	6	5.8	6	100	0	70	0	68	0	31	0.90
20110249--20110300	15	3.6	15	80	12	56	44	0	1	53	1.11
20110364--20110398	18	2.0	17	88	5	52	45	0	0	54	0.99
20110124--20110420	120	2.5	120	92	3	501	43	2	4	49	1.37
20110561--20110651	45	2.0	45	85	2	121	37	28	6	27	1.82
20110632--20110683	16	3.2	16	100	0	104	38	36	0	25	1.56
20113842--20113922	31	2.6	31	82	0	99	27	18	14	39	1.90
20115983--20116011	15	1.9	15	100	0	58	44	0	34	20	1.52
20126959--20126999	18	2.4	17	88	8	57	36	2	0	60	1.10
20126959--20127000	9	5.0	8	81	18	50	35	2	0	61	1.09
20126959--20127000	16	2.5	17	88	7	59	35	2	0	61	1.09
20129779--20129810	3	10.7	3	93	0	55	68	0	3	28	1.04
20131726--20131789	19	3.2	19	72	14	58	68	0	0	31	0.90
20131731--20131768	16	2.2	18	86	9	53	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20131710--20131780	29	2.4	29	81	9	81	63	0	0	36	0.95
20153054--20153146	39	2.5	37	80	7	98	27	29	22	20	1.98
20153501--20153527	3	9.0	3	100	0	54	66	0	0	33	0.92
20154235--20154269	16	2.2	16	89	0	52	2	14	8	74	1.17
20154272--20154335	31	2.2	29	80	8	76	48	1	1	48	1.20
20159253--20159295	21	2.0	21	82	8	52	23	20	4	51	1.66
20160340--20160432	39	2.5	37	80	7	98	27	29	22	20	1.98
20160786--20160819	3	11.0	3	87	6	50	64	2	0	32	1.08
20161504--20161539	15	2.4	15	90	0	54	2	16	8	72	1.21
20161539--20161614	21	3.5	22	79	10	77	50	0	1	48	1.09
20163046--20163148	42	2.5	40	88	6	143	31	46	3	18	1.67
20165956--20165996	16	2.6	16	92	0	64	43	7	2	46	1.44
20165970--20166031	23	2.7	23	82	2	72	48	1	1	48	1.21
20178127--20178179	17	3.1	17	81	8	54	66	1	1	30	1.13
20178405--20178448	22	2.0	22	83	12	56	20	9	2	68	1.28
20178487--20178542	29	1.9	29	85	0	76	30	5	3	60	1.36
20189990--20190277	113	2.6	111	87	2	407	24	0	14	60	1.40
20190298--20190371	29	2.5	29	86	8	96	22	13	14	48	1.79
20190323--20190396	29	2.5	29	82	4	85	25	13	13	47	1.79
20191092--20191359	112	2.4	107	86	8	369	25	0	15	58	1.42
20191598--20191650	21	2.5	22	78	3	54	32	5	7	54	1.52
20193095--20193186	46	2.0	46	100	0	184	34	10	30	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20195682--20195730	26	1.9	25	84	12	64	59	8	2	30	1.38
20195477--20195739	106	2.5	103	82	9	341	57	12	1	28	1.44
20195831--20195867	16	2.2	18	85	9	51	8	24	0	67	1.17
20210576--20210615	4	9.5	4	91	8	62	72	2	0	25	0.97
20214466--20214508	23	2.0	22	86	9	61	46	16	2	34	1.60
20247297--20247340	20	2.2	20	83	0	52	31	4	25	38	1.76
20248355--20248396	21	2.0	21	100	0	84	28	9	23	38	1.86
20256952--20258349	705	2.0	705	98	0	2706	33	16	20	30	1.94
20258781--20258821	20	2.0	20	100	0	82	34	9	9	46	1.70
20260883--20261017	53	2.8	48	83	7	166	25	22	14	37	1.92
20260921--20261033	53	2.1	53	90	0	172	23	19	14	43	1.87
20274409--20274478	30	2.4	31	78	9	74	48	10	2	38	1.51
20276837--20276890	21	2.6	21	90	0	90	18	31	29	20	1.96
20280737--20280768	16	2.0	16	93	0	55	53	12	15	18	1.73
20280917--20280961	22	2.0	22	83	8	56	15	2	17	64	1.39
20282977--20283018	18	2.6	16	79	17	50	35	0	7	57	1.26
20285393--20285620	43	5.3	43	79	5	219	21	16	30	31	1.95
20285391--20285620	86	2.6	88	83	6	274	21	16	30	31	1.95
20287696--20287748	7	7.6	7	78	16	56	28	9	0	62	1.26
20287701--20287752	21	2.4	21	87	3	68	32	7	0	59	1.26
20287757--20287784	12	2.3	12	100	0	56	35	7	0	57	1.26
20287782--20287811	15	2.0	15	93	0	51	20	10	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20289193--20289239	24	2.0	23	84	12	60	31	12	4	51	1.59
20289478--20289521	22	1.9	24	90	9	74	25	20	0	54	1.45
20290119--20290188	5	14.6	5	72	24	62	57	0	0	42	0.99
20290119--20290187	15	4.7	16	75	15	69	56	0	0	43	0.99
20290285--20290329	23	2.0	23	82	8	56	28	22	0	48	1.50
20295805--20295856	16	3.2	16	94	0	86	28	0	36	34	1.58
20295837--20295931	45	2.1	44	88	1	136	34	5	27	32	1.79
20296069--20296123	25	2.2	25	84	9	69	52	1	0	45	1.11
20300597--20300643	23	2.1	23	84	7	62	29	2	10	57	1.44
20303548--20303582	18	2.0	18	88	5	54	34	11	5	48	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189