genome.fa.s20.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  55  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15686283--15686357	14	5.4	14	74	6	62	18	4	34	42	1.69
15686284--15686357	21	3.5	21	77	0	67	18	4	33	43	1.69
15686481--15686510	15	2.0	15	93	0	51	63	0	3	33	1.11
15686717--15686754	20	1.9	20	94	0	67	34	0	7	57	1.28
15687275--15687319	19	2.4	19	80	0	54	33	37	2	26	1.69
15689316--15689501	30	6.1	30	73	10	162	43	11	2	43	1.52
15689268--15689366	37	2.6	37	77	6	108	45	9	3	42	1.51
15689595--15689965	16	23.1	16	64	22	113	47	18	3	30	1.67
15689514--15689749	25	9.4	25	74	14	139	45	19	2	32	1.64
15689612--15689964	66	5.1	66	74	15	264	47	18	3	29	1.67
15689702--15689755	25	2.2	25	82	0	63	51	18	1	27	1.56
15689741--15689897	25	6.0	24	69	25	72	46	17	5	29	1.71
15689652--15689965	41	7.4	41	71	15	192	48	17	4	29	1.66
15689760--15689913	83	1.9	83	94	0	272	48	16	5	29	1.70
15689851--15689969	25	4.8	25	77	12	86	47	16	2	32	1.60
15689899--15689977	25	3.2	25	81	10	92	46	16	2	34	1.60
15689692--15689964	149	1.8	147	92	0	438	47	17	4	30	1.68
15695878--15696103	43	5.3	43	79	4	231	29	22	26	21	1.99
15695867--15696103	129	1.8	129	81	5	300	28	21	27	22	1.99
15699676--15699740	32	2.0	32	96	0	121	35	10	7	46	1.68
15699708--15707493	708	11.0	709	91	1	12508	35	16	14	33	1.89
15706772--15706840	34	2.0	34	85	0	93	31	8	10	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15712463--15712514	16	3.1	17	80	5	61	40	0	0	59	0.97
15712463--15712519	9	6.3	9	74	13	55	40	0	0	59	0.97
15712466--15712520	17	3.2	17	77	10	58	38	0	0	61	0.96
15717522--15717579	11	5.0	12	72	12	50	60	0	6	32	1.23
15719126--15720134	100	10.1	100	90	0	1527	23	19	22	34	1.97
15720274--15720483	44	4.8	44	79	0	224	31	28	13	26	1.94
15720274--15720485	88	2.4	88	92	0	363	31	27	13	26	1.94
15721908--15721997	47	1.9	46	93	2	153	13	23	21	42	1.88
15722891--15722933	1	43.0	1	80	0	50	0	4	4	90	0.54
15723727--15723785	25	2.3	25	82	8	66	59	5	13	22	1.54
15725076--15725115	21	1.9	21	84	0	53	22	30	0	47	1.52
15727394--15727550	43	3.7	43	76	8	160	23	16	26	33	1.96
15727711--15727742	16	1.9	17	93	6	57	40	0	21	37	1.54
15736809--15736861	26	2.0	26	100	0	106	26	3	15	54	1.57
15738931--15738982	27	1.9	27	96	0	95	26	26	13	32	1.94
15739039--15739172	68	2.0	68	83	2	171	22	23	15	38	1.93
15740949--15741091	70	2.0	70	98	0	277	23	13	8	54	1.66
15742583--15742651	28	2.3	30	87	7	97	40	0	5	53	1.25
15743601--15743699	23	4.4	23	80	2	112	22	19	20	38	1.94
15748247--15748314	25	2.7	26	79	6	68	32	20	30	16	1.94
15750234--15750379	61	2.4	61	90	1	229	49	6	0	43	1.34
15753081--15753188	25	4.2	25	78	5	110	32	8	20	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753063--15753179	52	2.3	51	80	8	121	35	7	20	36	1.81
15758504--15758545	15	2.7	16	82	14	52	52	2	0	45	1.13
15758513--15758554	15	2.9	15	86	10	61	54	0	0	45	0.99
15758539--15758846	61	5.1	61	68	14	253	49	6	1	41	1.39
15758623--15758674	15	3.6	15	80	12	56	53	1	0	44	1.11
15758507--15758923	59	7.0	58	67	16	235	50	5	2	41	1.37
15758743--15758794	15	3.6	15	80	12	56	53	1	0	44	1.11
15758507--15758919	120	3.4	120	96	0	747	50	5	2	41	1.38
15758935--15759139	88	2.3	89	88	6	297	46	4	2	46	1.38
15758960--15759099	44	3.2	43	67	16	115	47	3	2	46	1.31
15762213--15762248	15	2.4	15	100	0	72	44	11	8	36	1.70
15762510--15762535	6	4.3	6	100	0	52	50	0	0	50	1.00
15765275--15765301	12	2.2	12	100	0	54	37	33	7	22	1.82
15772329--15772371	15	2.9	15	80	10	52	60	2	2	34	1.22
15777930--15777973	22	2.0	22	95	0	79	9	13	6	70	1.33
15779547--15779680	40	3.3	40	79	6	137	32	20	21	25	1.98
15779738--15779888	41	3.7	41	84	1	223	23	23	24	28	2.00
15779735--15779888	81	1.9	81	93	0	263	22	23	25	27	2.00
15780293--15780326	14	2.3	15	95	5	61	38	0	26	35	1.57
15780984--15781017	16	2.1	16	88	5	50	70	2	2	23	1.15
15785563--15785713	43	3.4	43	81	7	187	16	14	37	31	1.89
15787911--15787967	20	2.8	19	84	7	60	49	0	3	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15789548--15789610	31	2.0	33	84	6	85	33	11	14	41	1.81
15803490--15803523	2	17.0	2	93	0	59	2	47	0	50	1.16
15805140--15805206	31	2.2	31	83	2	82	35	13	7	43	1.72
15810828--15810890	29	2.2	28	85	2	81	14	6	4	74	1.18
15814611--15814665	19	2.9	19	84	10	60	30	16	5	47	1.69
15822384--15822666	51	5.8	51	69	14	195	35	17	18	28	1.93
15822381--15822703	95	3.4	95	83	3	400	34	17	17	29	1.93
15824297--15824323	3	9.0	3	100	0	54	33	0	0	66	0.92
15824452--15824486	3	11.3	3	87	6	52	31	0	2	65	1.07
15835095--15835204	49	2.2	49	96	0	202	40	13	14	31	1.85
15840255--15840294	21	2.0	20	85	5	53	27	10	17	45	1.80
15841129--15841432	107	2.9	107	91	1	477	35	19	15	29	1.93
15841669--15841740	8	9.6	8	72	24	68	72	1	1	25	1.01
15841664--15841734	14	5.0	14	78	11	65	73	1	1	23	1.00
15841665--15841739	17	4.4	17	75	22	77	73	1	1	24	0.99
15841665--15841719	3	19.3	3	75	17	55	72	0	0	27	0.85
15843530--15843951	132	3.2	132	91	0	666	27	23	17	30	1.97
15843704--15843893	44	4.3	44	65	15	113	26	25	17	30	1.98
15843952--15844162	44	4.7	46	75	10	195	23	22	25	28	1.99
15843954--15844162	89	2.3	89	88	4	314	23	22	25	28	1.99
15844431--15844483	24	2.2	24	86	0	79	30	28	9	32	1.88
15845436--15845499	19	3.4	18	76	21	60	1	17	0	81	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15845436--15845490	24	2.3	24	84	6	67	1	16	0	81	0.77
15845441--15845479	16	2.4	17	86	4	53	0	17	0	82	0.68
15850597--15850631	16	2.2	16	94	0	61	42	20	17	20	1.89
15851555--15851858	107	2.9	107	91	0	493	35	20	15	29	1.93
15852095--15852171	8	8.6	8	71	20	55	71	3	1	23	1.10
15852090--15852171	14	5.9	13	72	12	65	71	3	1	23	1.08
15852078--15852146	36	1.9	36	82	5	86	71	1	2	24	1.09
15852095--15852171	28	2.7	27	86	6	91	71	3	1	23	1.10
15852090--15852171	36	2.2	36	83	10	96	71	3	1	23	1.08
15852241--15852278	16	2.5	16	87	8	53	39	0	5	55	1.23
15856294--15856353	24	2.6	23	81	2	66	30	13	16	40	1.87
15856317--15856358	12	3.6	12	77	6	50	23	14	21	40	1.90
15856294--15856381	23	3.8	23	81	4	88	29	12	18	39	1.87
15856347--15856391	23	2.0	23	82	8	56	37	8	17	35	1.81
15859154--15859248	47	2.0	47	100	0	190	23	12	6	57	1.57
15860472--15860523	24	2.2	24	89	0	77	38	1	9	50	1.46
15864390--15864428	18	2.2	18	95	0	69	25	15	28	30	1.96
15864690--15864741	24	2.2	24	89	0	77	36	3	9	50	1.54
15865345--15865390	13	3.6	13	80	13	51	47	2	2	47	1.26
15865770--15865807	8	4.5	8	90	9	58	36	0	0	63	0.95
15865770--15865864	18	5.4	18	76	8	70	35	2	1	61	1.15
15865778--15865834	19	3.2	18	80	9	64	42	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15865873--15866085	92	2.4	90	79	6	243	33	7	20	38	1.82
15868941--15868990	25	2.0	25	96	0	91	38	16	26	20	1.92
15869675--15869728	25	2.2	25	89	0	81	46	12	14	25	1.81
15875655--15875712	29	2.0	30	83	10	75	41	3	1	53	1.28
15875689--15875719	16	1.9	16	93	0	53	41	3	0	54	1.16
15891153--15891210	27	2.1	28	96	3	109	29	1	17	51	1.55
15891160--15891217	27	2.1	27	87	3	80	29	1	18	50	1.57
15892083--15892123	21	2.1	19	86	9	55	46	2	19	31	1.63
15903769--15903815	21	2.2	21	77	7	51	36	21	2	40	1.65
15906018--15906049	16	1.9	17	93	6	57	37	21	0	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189