genome.fa.s20.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  137  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41589811--41589863	18	2.9	18	83	8	54	13	16	5	64	1.47
41600501--41600527	14	1.9	14	100	0	54	33	22	14	29	1.94
41605294--41605357	20	3.2	20	82	4	67	32	15	26	25	1.95
41607412--41607450	18	2.3	17	86	8	53	10	17	0	71	1.12
41607438--41607472	18	1.9	18	88	11	54	25	17	0	57	1.40
41607502--41607543	18	2.3	18	87	0	66	7	16	4	71	1.26
41607482--41607547	24	2.8	24	81	2	62	7	18	4	69	1.29
41609907--41609960	20	2.7	19	88	5	72	33	16	24	25	1.96
41615397--41615479	28	3.0	28	77	10	89	42	8	14	34	1.76
41615458--41615519	28	2.2	29	85	2	81	53	11	6	29	1.61
41615851--41615947	29	3.1	34	62	32	90	29	10	13	46	1.76
41615864--41615959	33	3.2	33	67	27	102	31	9	14	44	1.77
41621350--41621411	23	2.7	23	87	0	88	37	27	6	29	1.82
41623899--41623961	18	3.3	18	79	18	58	74	3	17	4	1.12
41623927--41623978	15	3.3	15	80	19	61	78	0	13	7	0.94
41623922--41623968	18	2.4	19	89	10	69	78	0	14	6	0.93
41623933--41624009	33	2.3	32	84	6	100	75	1	16	6	1.08
41623932--41623969	9	4.2	9	87	12	60	78	0	13	7	0.94
41623922--41623979	18	3.4	17	79	15	66	79	0	13	6	0.93
41627148--41627184	20	2.0	20	84	10	51	51	5	29	13	1.63
41630361--41630405	5	8.4	5	83	11	54	80	2	17	0	0.82
41630359--41630405	11	4.2	12	84	13	57	78	2	19	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41634726--41634780	20	2.8	20	82	0	74	14	27	16	41	1.87
41637409--41637474	21	3.2	21	64	12	55	15	28	16	39	1.89
41637396--41637511	41	2.8	41	90	0	187	17	25	18	37	1.93
41637395--41637462	20	3.3	20	68	11	57	16	25	19	39	1.91
41638489--41638568	28	2.9	28	92	0	142	30	22	22	25	1.99
41638933--41639099	27	6.3	25	84	8	165	17	17	24	39	1.92
41638934--41639099	53	3.1	53	87	2	226	18	18	24	39	1.92
41638933--41639099	80	2.1	80	85	2	219	17	17	24	39	1.92
41645399--41645434	10	3.6	10	92	0	63	36	22	22	19	1.95
41648251--41648541	27	10.8	27	84	0	330	42	21	15	20	1.89
41648492--41648574	27	3.1	27	82	3	78	38	18	16	26	1.92
41648251--41648541	81	3.6	81	83	0	375	42	21	15	20	1.89
41653639--41653735	48	2.0	48	82	4	115	65	3	24	6	1.30
41653666--41653711	21	2.1	22	84	4	58	67	2	23	6	1.25
41657143--41657219	32	2.5	31	83	8	93	27	29	18	24	1.98
41658257--41658327	36	2.0	36	94	0	124	25	12	18	43	1.85
41658847--41658874	14	2.0	14	100	0	56	42	7	7	42	1.59
41659164--41659209	23	2.0	23	87	8	67	17	47	6	28	1.72
41662258--41662311	28	2.0	28	88	3	83	48	1	7	42	1.42
41668129--41668513	194	2.0	194	93	0	653	41	8	30	20	1.81
41671461--41671513	23	2.4	22	75	9	54	9	18	1	69	1.25
41677779--41677915	40	3.4	40	83	2	150	37	18	26	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41677920--41677957	20	1.9	20	88	0	58	34	15	31	18	1.92
41681201--41681253	23	2.3	23	83	9	63	33	13	11	41	1.80
41681383--41681407	13	1.9	13	100	0	50	24	0	12	64	1.27
41684892--41685069	27	6.6	27	75	6	119	29	26	16	28	1.97
41684892--41685069	54	3.3	54	74	12	150	29	26	16	28	1.97
41692911--41693088	27	6.6	27	75	6	119	29	26	16	28	1.97
41692911--41693088	54	3.3	54	74	12	150	29	26	16	28	1.97
41696298--41696402	53	2.0	53	98	0	201	18	15	20	46	1.84
41700584--41700624	19	2.1	20	90	4	66	17	21	17	43	1.87
41702149--41702176	13	2.2	13	100	0	56	71	0	7	21	1.09
41702079--41702247	80	2.1	80	94	1	293	42	5	11	39	1.66
41703239--41703284	12	3.8	12	85	2	56	63	2	21	13	1.40
41714151--41714195	19	2.3	19	96	3	81	40	0	0	60	0.97
41717396--41717439	23	1.9	24	90	9	74	22	20	2	54	1.56
41717797--41717844	22	2.2	22	81	7	53	0	25	8	66	1.19
41718036--41718094	5	11.6	5	77	22	61	61	0	0	38	0.96
41719068--41719119	22	2.4	22	93	0	86	44	13	7	34	1.72
41719081--41719124	22	2.0	22	91	4	72	45	11	9	34	1.72
41722189--41722228	20	2.0	21	90	5	64	70	0	25	5	1.08
41724171--41724319	45	3.3	45	85	3	201	22	15	26	34	1.94
41724171--41724351	45	4.1	45	80	11	178	22	16	26	34	1.95
41733769--41733863	9	11.2	9	72	15	60	61	1	3	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41733801--41733883	21	4.0	21	78	10	82	63	0	2	33	1.07
41733799--41733883	9	9.6	9	75	19	63	63	0	2	34	1.07
41733813--41733883	19	3.6	19	78	16	58	64	0	2	32	1.08
41733801--41733906	22	5.0	20	73	16	65	61	0	2	35	1.11
41734430--41734458	15	1.9	15	100	0	58	58	0	6	34	1.25
41734578--41734616	17	2.3	17	86	8	53	23	2	5	69	1.21
41737658--41737740	26	3.2	26	87	0	112	26	21	26	25	2.00
41750360--41750761	39	10.3	39	86	2	378	32	15	33	18	1.92
41750419--41750753	19	17.2	19	65	11	142	33	15	34	17	1.91
41750386--41750760	78	4.8	78	87	2	520	33	15	33	17	1.91
41750386--41750760	117	3.2	117	84	2	520	33	15	33	17	1.91
41756325--41756504	50	3.6	50	84	1	225	27	23	28	20	1.99
41759464--41759591	38	3.3	37	78	9	123	46	11	7	34	1.67
41761539--41761615	38	2.0	38	87	0	109	32	35	0	32	1.58
41762438--41762475	14	2.7	14	88	8	51	21	0	21	57	1.40
41763426--41763468	14	2.9	15	76	16	54	32	2	11	53	1.50
41763635--41763752	41	2.9	41	90	0	191	16	23	26	33	1.96
41763639--41763773	41	3.3	41	88	0	171	17	23	25	33	1.96
41763705--41763830	57	2.2	57	91	0	198	17	21	24	36	1.94
41768690--41768912	119	1.9	120	84	6	301	24	27	23	24	2.00
41768669--41768912	40	6.1	40	84	6	291	24	27	22	25	2.00
41776801--41776976	72	2.4	72	84	2	219	31	26	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41783665--41783844	72	2.5	72	85	3	236	32	26	13	27	1.93
41784374--41784521	74	2.0	74	97	0	278	16	25	25	32	1.96
41791322--41791397	33	2.3	33	97	0	143	26	21	18	34	1.96
41796783--41796835	23	2.4	22	76	20	56	9	18	1	69	1.25
41799190--41799224	4	9.0	4	93	6	63	74	0	0	25	0.82
41810968--41811126	45	3.6	44	83	7	171	35	27	14	22	1.93
41818299--41818419	56	2.2	56	98	0	233	45	9	23	22	1.80
41853993--41854047	16	3.6	16	78	9	69	18	12	5	63	1.47
41853993--41854044	15	3.5	15	81	7	70	17	11	5	65	1.44
41854087--41854127	11	3.7	11	93	0	73	17	0	7	75	1.02
41857112--41857498	40	9.7	40	91	2	638	26	26	20	26	1.99
41857055--41857511	40	11.5	40	87	3	629	26	26	21	25	1.99
41857084--41857511	80	5.4	80	94	0	736	26	25	21	26	1.99
41858785--41858886	37	2.8	37	95	0	177	26	30	18	24	1.98
41859005--41860048	47	22.6	47	94	3	1827	29	29	8	32	1.86
41859005--41860048	367	2.8	368	95	3	1827	29	29	8	32	1.86
41859690--41860048	96	3.8	94	97	2	684	30	29	8	32	1.87
41860027--41860057	16	1.9	16	93	0	53	38	29	0	32	1.57
41865672--41865854	51	3.6	51	75	10	160	23	17	27	31	1.97
41865827--41865858	14	2.4	14	90	10	50	21	9	28	40	1.84
41865860--41865952	45	2.1	45	93	0	159	25	19	23	31	1.98
41869432--41869464	4	8.0	4	96	3	57	72	3	0	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870817--41870879	23	2.7	22	73	23	58	11	22	1	65	1.33
41873232--41873291	22	2.7	23	73	19	63	66	6	0	26	1.16
41873241--41873274	4	8.0	4	90	9	50	73	2	0	23	0.97
41883473--41883503	15	2.1	14	94	5	53	0	38	0	61	0.96
41884186--41884424	27	8.9	27	81	5	234	43	20	19	16	1.88
41884199--41884421	81	2.8	81	81	3	263	45	18	19	16	1.86
41884744--41884831	28	3.1	28	88	0	122	22	26	20	30	1.98
41884763--41884853	28	3.3	26	84	6	92	24	28	20	26	1.99
41889551--41889578	13	2.2	13	100	0	56	21	0	25	53	1.46
41890870--41891097	27	8.4	27	80	6	212	42	19	18	18	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189