genome.fa.s20.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  120  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33713069--33720770	143	54.7	141	72	11	3804	36	8	15	39	1.79
33713069--33720770	285	27.4	281	74	10	4767	36	8	15	39	1.79
33716669--33720770	142	29.2	139	73	10	1648	36	9	15	39	1.79
33717186--33717800	145	4.3	141	76	8	546	37	9	13	40	1.77
33720830--33720926	32	3.2	32	60	16	80	48	7	11	32	1.66
33720817--33720934	58	2.0	58	100	0	236	48	6	10	34	1.64
33722601--33722630	15	2.0	15	100	0	60	0	60	6	33	1.23
33727329--33727375	23	2.0	25	84	16	64	61	2	2	34	1.20
33737364--33737606	50	4.7	51	81	8	253	26	20	29	23	1.99
33737854--33737892	12	3.2	12	85	0	51	51	5	23	20	1.67
33741013--33741040	9	3.1	9	100	0	56	53	0	25	21	1.46
33751567--33751613	20	2.3	20	100	0	94	38	29	14	17	1.89
33754673--33754975	23	12.7	23	73	6	192	39	17	14	27	1.89
33754685--33754975	72	4.1	70	78	7	280	39	17	15	27	1.90
33754748--33754975	48	4.8	46	77	5	213	40	18	15	24	1.90
33755809--33755906	42	2.3	43	92	3	164	27	24	8	39	1.83
33756767--33756804	20	1.9	20	88	0	58	36	10	0	52	1.36
33765172--33765328	48	3.3	47	82	4	188	33	29	14	22	1.93
33767489--33767538	21	2.5	20	87	6	66	28	4	24	44	1.72
33770456--33770589	27	5.0	27	74	3	110	23	28	13	34	1.93
33770484--33770604	54	2.2	53	85	5	154	23	28	14	33	1.94
33789537--33789579	22	2.0	21	82	13	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33791071--33791111	18	2.2	19	91	4	66	60	0	0	39	0.96
33794536--33794570	17	2.0	17	88	5	52	42	14	0	42	1.45
33794536--33794584	18	2.7	18	84	6	55	40	12	2	44	1.53
33807549--33807607	30	2.1	30	81	9	70	66	6	5	22	1.36
33808331--33808576	50	4.8	50	84	3	276	26	20	30	23	1.98
33814610--33814651	20	2.0	22	90	9	70	45	14	0	40	1.45
33816658--33816687	15	2.0	15	93	0	51	46	3	6	43	1.46
33818743--33818794	25	2.1	25	96	0	95	13	26	17	42	1.86
33820257--33820440	38	4.7	37	71	17	140	44	1	3	51	1.27
33820304--33820457	18	8.9	18	66	18	76	42	0	2	54	1.19
33820239--33820597	120	3.0	120	97	0	664	44	0	3	51	1.26
33828659--33828733	17	4.7	16	71	15	66	46	0	1	52	1.09
33832433--33832462	15	2.0	15	93	0	51	63	3	6	26	1.35
33842094--33842199	41	2.6	41	93	0	176	31	24	21	22	1.98
33849961--33850063	41	2.5	41	95	0	179	31	25	21	22	1.98
33857120--33857191	26	2.8	26	84	0	99	25	23	20	30	1.99
33860948--33860977	16	1.9	16	93	6	53	50	20	0	30	1.49
33865809--33865875	34	2.0	34	100	0	134	26	11	16	44	1.82
33911051--33911099	18	2.6	17	78	15	53	18	10	2	69	1.27
33912417--33912744	144	2.3	144	96	1	604	41	17	20	20	1.90
33913730--33913754	8	3.1	8	100	0	50	24	12	40	24	1.88
33916701--33916766	25	2.6	25	92	4	98	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33921070--33921119	25	2.0	25	96	0	91	26	8	6	60	1.48
33922644--33922697	22	2.6	21	76	5	56	40	5	3	50	1.44
33929795--33929833	16	2.5	15	83	8	51	43	0	2	53	1.14
33931258--33931328	36	2.0	36	85	0	97	23	22	15	38	1.93
33933173--33933226	25	2.1	26	83	10	67	27	3	3	64	1.27
33935522--33935687	27	6.2	27	85	3	210	43	21	16	18	1.87
33945784--33945837	28	1.9	28	85	7	74	64	16	3	14	1.42
33950120--33950196	16	4.8	16	95	1	127	29	0	36	33	1.58
33950177--33950271	45	2.1	44	88	1	136	34	5	27	32	1.79
33950409--33950463	25	2.2	25	84	9	69	52	1	0	45	1.11
33962421--33962532	49	2.3	49	90	0	179	30	16	29	23	1.96
33965988--33966057	19	3.6	19	88	7	97	54	5	0	40	1.24
33966068--33966124	10	5.7	10	76	15	55	63	3	0	33	1.12
33966053--33966128	21	3.8	20	76	10	66	56	2	0	40	1.13
33966067--33966133	11	6.9	10	73	19	61	61	2	0	35	1.12
33966072--33966149	39	2.0	40	87	10	115	60	3	1	34	1.23
33966899--33966979	30	2.7	30	98	0	153	51	12	17	18	1.75
33968806--33968843	18	2.1	18	90	0	58	10	2	39	47	1.52
33970865--33970914	25	2.0	25	100	0	100	28	0	48	24	1.52
33971858--33971898	20	2.0	20	95	0	73	78	4	9	7	1.10
33975025--33975049	13	1.9	13	100	0	50	64	8	8	20	1.46
33987996--33988258	40	6.6	40	87	3	316	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33988035--33988293	80	3.3	80	84	3	238	25	20	28	25	1.99
33995945--33996207	40	6.6	40	87	3	316	24	20	28	26	1.99
33995984--33996242	80	3.3	80	84	3	238	25	20	28	25	1.99
34002465--34002532	15	4.5	15	81	3	73	35	17	8	38	1.81
34002465--34002532	30	2.2	31	86	2	93	35	17	8	38	1.81
34006914--34006977	26	2.5	26	86	0	83	21	26	23	28	1.99
34016898--34017222	27	12.1	27	81	1	357	36	19	19	25	1.95
34017489--34017705	64	3.4	62	79	6	229	21	19	21	37	1.94
34017524--34017725	95	2.1	95	83	3	246	20	19	20	38	1.93
34017492--34017725	32	7.4	32	79	4	199	21	19	20	38	1.94
34017598--34017724	63	2.0	63	87	3	184	20	22	21	35	1.96
34017775--34017827	26	2.0	26	81	0	61	22	26	16	33	1.96
34036869--34037627	379	2.0	379	94	0	1338	38	17	10	33	1.85
34042275--34042303	12	2.3	13	94	5	51	65	6	6	20	1.40
34050032--34050063	3	10.7	3	100	0	64	31	0	0	68	0.90
34057611--34057663	21	2.5	22	78	6	63	54	0	0	45	0.99
34058720--34058833	38	3.0	38	82	0	156	28	19	23	28	1.98
34059364--34059416	21	2.5	20	82	14	63	50	1	0	47	1.12
34061109--34061139	16	1.9	16	93	0	53	77	6	6	9	1.12
34065646--34065843	68	2.9	69	79	6	199	39	19	19	21	1.93
34068485--34068708	104	2.2	104	92	1	369	18	19	31	30	1.95
34068627--34068778	71	2.1	72	92	1	252	23	17	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34078308--34078572	40	6.7	40	84	5	270	24	27	21	26	1.99
34078504--34078581	40	1.9	41	82	10	97	26	28	21	23	1.99
34108895--34109137	122	2.0	122	95	0	441	37	19	11	31	1.87
34110388--34110444	29	2.0	29	82	6	71	24	5	7	63	1.41
34110870--34110897	11	2.5	11	100	0	56	21	28	7	42	1.79
34110855--34110921	11	6.0	11	77	19	52	23	26	2	46	1.67
34112771--34112810	18	2.3	17	83	8	53	17	30	7	45	1.76
34113318--34113376	22	2.4	25	70	24	61	44	27	0	28	1.55
34113324--34113389	22	3.0	22	93	6	109	43	31	0	24	1.54
34117199--34117247	23	2.1	23	81	7	55	28	0	4	67	1.09
34117701--34118266	224	2.6	216	85	8	737	24	0	14	60	1.40
34117844--34118266	112	3.8	109	87	6	582	24	1	14	59	1.42
34123702--34123947	108	2.3	105	83	8	286	58	14	1	25	1.46
34123891--34123938	25	1.9	25	83	8	62	60	10	2	27	1.41
34132237--34132699	27	17.1	27	80	0	415	37	19	20	22	1.94
34132683--34132759	26	3.0	25	78	12	68	24	16	22	36	1.94
34132720--34132816	24	4.0	23	82	5	70	25	6	19	48	1.72
34132722--34132818	48	2.0	48	86	7	135	25	6	18	49	1.71
34132733--34132830	24	4.1	24	83	0	124	23	7	20	48	1.74
34132899--34132956	27	2.1	27	84	12	75	20	25	20	32	1.97
34132972--34133124	80	1.9	80	89	2	236	17	20	25	35	1.95
34133082--34133174	32	2.9	32	77	0	96	18	22	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34141227--34141313	42	2.1	42	91	4	140	20	26	22	29	1.99
34148430--34148472	23	1.9	22	90	4	68	39	13	9	37	1.78
34148430--34148487	19	2.8	20	84	10	64	37	15	8	37	1.78
34160080--34160222	27	5.3	27	85	0	196	38	19	18	23	1.93
34160205--34160256	27	2.0	28	81	11	65	34	19	19	26	1.95
34163314--34163431	43	2.7	43	81	2	121	32	22	18	26	1.97
34163362--34163487	43	2.9	43	83	4	130	27	15	25	30	1.96
34171339--34171401	25	2.5	25	82	5	65	33	17	12	36	1.88
34174383--34174421	18	2.1	19	85	4	53	41	15	15	28	1.87
34174344--34174832	247	2.0	247	89	0	753	30	28	16	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189