genome.fa.s20.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  58  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16468712--16468902	45	4.3	44	70	12	113	29	19	25	25	1.98
16468795--16468950	45	3.5	45	73	5	172	31	19	25	23	1.98
16468809--16468984	89	2.0	89	88	2	264	31	20	22	25	1.98
16468809--16469016	89	2.3	89	84	3	231	29	20	23	25	1.99
16470872--16470917	16	2.8	17	75	15	51	26	13	2	58	1.46
16471018--16471059	22	1.9	22	85	9	59	30	2	0	66	1.04
16470985--16471056	38	2.0	36	82	17	89	30	5	0	63	1.17
16472256--16472293	20	1.9	19	89	5	58	55	10	5	28	1.56
16473633--16473691	18	3.2	19	71	24	54	37	5	1	55	1.32
16477890--16477933	22	2.0	21	86	4	61	38	6	25	29	1.81
16486139--16486297	84	1.9	85	81	3	196	26	20	25	27	1.99
16486087--16486601	45	11.8	45	71	11	311	31	19	22	26	1.98
16486087--16486612	219	2.4	217	84	3	671	31	18	22	26	1.97
16498809--16498836	2	14.0	2	100	0	56	50	0	0	50	1.00
16503267--16503359	25	3.8	24	80	5	87	21	20	22	35	1.96
16507853--16507903	21	2.7	18	85	11	66	17	5	9	66	1.40
16508733--16508764	8	4.0	8	91	0	55	78	0	0	21	0.76
16508731--16508769	16	2.4	17	86	8	62	76	0	0	23	0.78
16511052--16511104	25	2.1	26	86	10	74	67	1	1	28	1.11
16515165--16515202	14	2.7	14	88	8	51	18	15	0	65	1.27
16517997--16518048	3	17.3	3	84	7	70	34	0	1	63	1.06
16517998--16518045	24	2.0	23	92	4	78	35	0	2	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16518168--16518211	6	7.7	6	85	10	65	36	0	0	63	0.95
16518163--16518211	18	3.0	16	83	13	64	34	0	0	65	0.93
16518167--16518280	28	4.1	27	73	12	90	35	5	1	57	1.31
16525407--16525865	229	2.0	229	100	0	918	32	16	24	27	1.96
16531128--16531231	44	2.4	44	86	3	138	29	22	20	27	1.98
16531826--16531870	17	2.6	18	82	3	56	71	6	13	8	1.31
16531890--16531929	21	1.9	21	84	0	53	7	5	7	80	1.03
16533130--16533217	40	2.2	40	81	4	106	35	19	22	22	1.96
16533130--16533237	40	2.7	39	73	12	94	37	18	20	23	1.94
16533298--16533657	41	8.9	41	82	6	394	20	23	29	26	1.99
16533365--16533655	122	2.4	121	85	6	388	19	24	29	26	1.98
16534436--16534510	21	3.5	21	78	5	62	22	0	32	45	1.53
16534477--16534516	21	1.9	21	89	0	62	15	0	42	42	1.46
16534487--16534551	7	9.3	7	75	6	60	21	0	44	33	1.53
16534501--16534551	21	2.4	21	90	0	75	23	0	43	33	1.54
16534866--16534913	23	2.0	24	84	8	62	56	4	12	27	1.54
16538766--16538856	43	2.1	43	87	2	130	34	12	9	43	1.75
16539073--16539103	15	2.0	16	93	6	55	58	0	6	35	1.24
16539118--16539311	44	4.5	44	94	1	347	18	17	34	30	1.93
16539118--16539311	87	2.2	87	95	1	345	18	17	34	30	1.93
16540201--16540234	13	2.5	13	90	4	50	47	0	2	50	1.16
16540313--16540354	21	2.0	21	86	9	59	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16543765--16543822	27	2.1	27	83	0	71	24	29	10	36	1.88
16543781--16543838	27	2.1	27	80	0	62	25	29	12	32	1.92
16544846--16544877	16	2.0	16	93	0	55	37	3	37	21	1.70
16545100--16545141	15	2.9	15	82	10	52	52	0	0	47	1.00
16545185--16545369	43	4.6	41	66	15	107	51	3	2	43	1.30
16545228--16545262	17	2.1	16	89	5	52	60	0	0	40	0.97
16545255--16545284	15	1.9	16	93	6	53	50	6	0	43	1.28
16545091--16545384	119	2.5	119	93	2	493	50	4	2	43	1.32
16545366--16545715	47	7.7	46	69	19	232	47	3	3	46	1.34
16545400--16545788	91	4.3	91	98	0	733	46	3	3	46	1.36
16545447--16545771	47	7.1	46	70	17	257	48	3	3	45	1.34
16548889--16548914	6	4.3	6	100	0	52	50	0	0	50	1.00
16549682--16549706	13	1.9	13	100	0	50	20	16	8	56	1.65
16549671--16549775	51	2.1	51	87	0	147	32	12	6	48	1.67
16550355--16550417	23	2.7	24	76	16	78	53	20	7	17	1.68
16560891--16560940	22	2.2	23	79	10	59	58	4	0	38	1.17
16560910--16560977	34	2.0	33	83	8	84	57	0	1	41	1.08
16561287--16561356	29	2.4	28	79	6	77	61	2	7	28	1.37
16561891--16561936	22	2.1	22	84	8	58	30	0	2	67	1.03
16579267--16579310	21	2.1	21	87	4	63	45	4	9	40	1.56
16580731--16580789	25	2.3	27	80	16	72	44	3	23	28	1.70
16586554--16586747	44	4.5	44	79	5	189	29	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16586550--16586706	85	1.8	85	90	0	251	29	18	22	29	1.97
16586547--16586787	129	1.9	129	85	1	340	29	18	21	30	1.97
16595464--16595511	19	2.5	18	80	12	51	41	6	18	33	1.76
16604401--16604456	28	2.0	29	92	3	96	55	3	0	41	1.17
16604393--16604467	29	2.6	29	83	8	109	53	2	0	44	1.14
16609069--16609114	20	2.3	21	81	11	60	63	4	2	30	1.26
16609539--16609584	10	5.1	9	75	19	51	65	2	0	32	1.05
16609548--16609588	21	2.0	21	86	9	59	65	2	0	31	1.05
16609723--16609764	22	1.9	22	85	0	57	57	0	4	38	1.20
16611367--16611413	13	3.4	14	80	11	51	25	6	2	65	1.27
16611601--16611629	12	2.4	12	100	0	58	41	10	0	48	1.37
16616285--16616374	46	2.0	45	86	2	126	45	16	24	13	1.83
16617677--16618111	43	9.6	44	65	10	178	32	20	22	25	1.97
16617694--16618425	91	8.1	90	89	4	869	32	18	23	25	1.97
16618028--16618427	45	9.0	43	71	11	274	31	17	24	26	1.97
16617753--16618427	44	15.0	44	68	9	398	32	18	23	25	1.97
16620424--16620470	13	3.4	14	80	11	51	25	6	2	65	1.27
16622857--16622899	19	2.3	18	84	15	52	20	23	13	41	1.88
16624735--16624795	9	6.9	9	88	3	88	85	3	0	11	0.72
16625635--16625681	8	5.6	8	87	9	58	78	0	12	8	0.95
16625654--16625688	16	2.2	16	89	0	52	77	0	11	11	1.00
16625773--16625819	21	2.2	21	88	0	67	29	10	34	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16626874--16627549	46	14.7	46	91	0	1064	26	16	27	29	1.97
16627560--16628529	132	7.3	132	95	0	1634	31	18	23	26	1.97
16627794--16628523	44	16.6	44	64	14	252	30	19	23	26	1.98
16628968--16629005	19	2.0	20	89	5	60	13	55	15	15	1.70
16631390--16631418	12	2.4	12	100	0	58	41	10	0	48	1.37
16639358--16639394	18	2.1	18	89	0	56	35	2	0	62	1.10
16651523--16651636	43	2.7	43	88	1	167	24	16	22	35	1.95
16652095--16652143	21	2.3	21	89	0	71	2	46	18	32	1.60
16652030--16652191	87	1.9	87	85	1	216	12	30	17	39	1.87
16653460--16653786	9	37.4	9	67	19	83	33	1	15	49	1.55
16653460--16653530	27	2.7	27	89	4	101	29	0	18	52	1.46
16653517--16653704	31	6.6	29	67	23	98	32	1	13	52	1.50
16653633--16653711	12	7.4	11	70	17	51	34	0	12	53	1.39
16653621--16653704	32	2.7	31	83	8	116	34	0	13	52	1.40
16653722--16653785	16	3.9	16	78	8	56	32	1	18	46	1.59
16653827--16653928	30	3.3	29	70	14	73	50	6	7	34	1.58
16653795--16653914	62	1.9	62	91	0	195	50	8	5	35	1.56
16653857--16653894	16	2.4	16	91	4	60	52	5	0	42	1.24
16653904--16653936	17	1.9	17	93	0	57	48	6	6	39	1.53
16653776--16653983	62	3.5	57	76	13	152	50	8	5	36	1.55
16658141--16658195	20	2.7	21	74	2	58	38	34	3	23	1.73
16658564--16658975	133	3.1	133	82	6	512	31	21	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16667431--16667508	27	2.8	28	75	11	72	66	2	5	25	1.25
16668379--16668466	39	2.3	39	86	4	124	42	1	3	53	1.25
16672686--16672753	25	2.7	25	81	4	75	29	19	32	19	1.96
16682450--16683956	502	3.0	502	99	0	3007	29	14	24	30	1.95
16689116--16689344	92	2.5	92	88	4	345	27	26	8	36	1.86
16689116--16689316	46	4.4	46	95	0	348	27	26	8	37	1.85
16695391--16695454	21	3.0	20	84	8	83	14	23	15	46	1.82
16698622--16698665	22	2.0	23	86	4	63	50	2	0	47	1.13
16701684--16701918	33	6.7	33	68	21	122	32	27	20	20	1.97
16701720--16701921	102	2.0	102	91	0	323	32	27	19	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189