genome.fa.s20.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  95  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26420390--26420428	18	2.2	18	95	0	69	38	0	12	48	1.42
26429292--26429348	19	2.9	20	82	7	64	68	0	3	28	1.06
26429292--26429348	20	2.9	20	84	7	64	68	0	3	28	1.06
26429404--26429442	16	2.5	16	83	4	53	41	0	5	53	1.23
26429564--26429607	19	2.3	19	88	4	61	27	2	4	65	1.23
26429545--26429607	21	3.1	20	79	9	56	23	1	6	68	1.22
26430582--26430633	14	3.8	13	78	14	52	40	1	3	53	1.30
26432036--26432089	20	2.7	20	77	13	56	42	0	11	46	1.39
26432410--26432478	5	13.8	5	100	0	138	60	0	0	39	0.97
26438070--26438107	18	2.1	18	90	0	58	50	10	10	28	1.70
26439958--26440042	30	2.8	31	78	5	95	31	18	17	31	1.95
26446125--26446213	28	3.2	28	72	9	76	29	13	24	32	1.93
26450201--26450269	27	2.6	26	81	2	84	34	15	21	27	1.94
26450338--26450396	24	2.5	24	80	5	75	25	6	23	44	1.78
26450512--26450593	26	3.2	26	96	0	146	15	18	23	42	1.88
26450618--26450711	32	2.9	32	77	3	100	23	21	19	36	1.95
26450727--26450781	22	2.5	22	82	5	58	18	20	14	47	1.83
26458236--26458284	23	2.1	23	100	0	98	46	4	0	48	1.20
26462400--26462623	104	2.2	104	93	1	378	31	31	19	17	1.95
26462952--26463015	30	2.2	29	81	10	76	29	28	6	35	1.82
26462959--26463015	30	1.9	30	85	3	80	29	24	7	38	1.82
26469955--26470177	104	2.2	103	93	2	376	31	31	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26470506--26470569	30	2.2	29	81	10	76	29	28	6	35	1.82
26470513--26470569	30	1.9	30	85	3	80	29	24	7	38	1.82
26473642--26473677	18	1.9	19	94	5	65	22	16	5	55	1.62
26479556--26479887	81	4.1	81	85	1	434	42	22	17	17	1.89
26479556--26479887	27	12.3	27	86	3	382	42	22	17	17	1.89
26483016--26483096	4	20.2	4	72	14	51	18	3	4	72	1.17
26489795--26489838	20	2.2	20	84	8	54	34	27	13	25	1.93
26492140--26492234	49	1.9	49	87	4	138	33	24	16	25	1.96
26492154--26492258	49	2.3	46	78	15	119	34	26	12	26	1.92
26495906--26496002	46	2.1	46	96	0	176	34	31	8	25	1.86
26497197--26497231	15	2.4	15	95	4	63	42	37	0	20	1.52
26497407--26497447	21	1.9	22	85	14	59	43	24	0	31	1.54
26497485--26497522	15	2.6	15	83	4	51	42	36	2	18	1.64
26497867--26498057	41	4.7	41	84	1	240	29	27	19	24	1.98
26498084--26498216	40	3.4	38	80	13	128	21	23	22	33	1.98
26498102--26498217	40	2.9	39	83	3	135	23	24	21	31	1.99
26501017--26501080	28	2.3	29	78	8	69	59	3	1	35	1.23
26501510--26501540	16	1.9	16	93	0	53	74	0	0	25	0.82
26509919--26509979	32	1.9	32	93	0	104	52	0	9	37	1.35
26512556--26512681	47	2.6	48	78	5	119	33	15	23	28	1.94
26520686--26520719	9	3.8	9	88	0	50	47	0	2	50	1.16
26525201--26525284	40	2.1	39	82	8	98	38	1	0	60	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26526728--26526779	24	2.2	24	92	0	86	36	5	9	48	1.60
26527513--26527543	16	1.9	16	93	0	53	54	6	0	38	1.26
26529102--26529184	22	3.8	22	77	4	69	40	20	6	32	1.77
26529079--26529184	44	2.4	44	84	3	124	39	19	6	33	1.78
26529699--26529731	12	2.8	12	95	0	57	33	48	9	9	1.66
26538419--26538473	28	2.0	28	96	0	101	27	12	18	41	1.86
26540105--26540260	53	2.9	53	90	0	240	33	14	25	27	1.94
26547837--26547968	40	3.3	39	78	10	119	31	22	23	22	1.99
26548095--26548182	41	2.1	41	87	0	122	17	23	23	35	1.95
26548736--26548773	15	2.5	16	83	12	53	18	0	44	36	1.50
26549140--26549194	28	2.0	28	88	0	83	47	3	7	41	1.49
26550365--26550416	27	1.9	27	92	0	86	42	0	11	46	1.40
26551746--26551797	27	1.9	27	92	0	86	44	0	11	44	1.40
26559628--26559663	19	1.9	18	88	5	54	25	13	2	58	1.49
26559845--26560154	43	7.2	43	79	7	283	23	18	30	27	1.97
26559874--26560178	85	3.6	85	79	7	287	24	19	29	26	1.98
26561025--26561082	30	1.9	30	89	0	89	41	3	24	31	1.71
26561294--26561325	13	2.5	13	94	0	55	31	0	12	56	1.37
26561419--26561660	50	4.7	50	86	4	297	26	24	29	19	1.99
26561419--26561668	100	2.4	103	88	6	364	26	24	29	20	1.99
26572186--26572220	18	2.0	17	88	5	52	34	0	22	42	1.54
26572791--26572831	10	4.0	10	87	3	55	34	0	19	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26583079--26583308	97	2.4	96	82	9	283	40	2	18	37	1.65
26583347--26583767	126	3.3	126	88	0	646	33	19	20	26	1.96
26583713--26583797	44	1.9	44	90	0	134	29	25	20	24	1.99
26589074--26589135	18	3.5	18	70	22	51	59	3	0	37	1.13
26589309--26589420	11	10.6	11	75	12	101	44	1	30	23	1.63
26589309--26589421	22	5.3	22	76	9	117	45	1	30	23	1.63
26589299--26589396	51	1.9	51	95	0	178	44	2	28	24	1.65
26596939--26596975	9	4.1	9	85	0	56	45	10	10	32	1.74
26597187--26597246	30	2.0	31	86	3	86	20	40	0	40	1.52
26599417--26599450	13	2.5	13	90	4	50	85	0	14	0	0.60
26603764--26603895	28	4.6	28	71	8	88	27	20	19	32	1.97
26604045--26604195	52	2.9	52	83	3	162	32	20	9	37	1.86
26605546--26605586	21	2.0	22	85	9	59	7	9	2	80	0.99
26607518--26607585	29	2.3	29	100	0	136	7	22	19	51	1.71
26608149--26608195	16	2.8	17	81	18	55	40	17	2	40	1.61
26608737--26608791	20	2.7	20	71	18	51	38	3	3	54	1.36
26612062--26612119	22	2.7	21	76	10	53	41	17	3	37	1.66
26612600--26612903	131	2.3	132	84	1	403	28	24	17	29	1.97
26612955--26613347	44	8.9	43	68	11	152	27	23	19	29	1.98
26613368--26613853	44	11.0	44	77	5	358	27	20	18	33	1.96
26613374--26613853	133	3.6	131	79	3	417	27	20	18	33	1.96
26613361--26613863	177	2.8	177	88	1	715	27	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26618476--26618520	19	2.3	20	85	7	58	37	11	24	26	1.89
26634632--26634659	12	2.3	12	100	0	56	42	14	17	25	1.87
26637770--26637800	16	1.9	16	93	0	53	9	6	9	74	1.23
26656170--26656230	25	2.4	25	81	5	70	39	1	1	57	1.18
26662493--26662527	14	2.5	14	90	0	52	14	11	8	65	1.46
26664228--26664344	62	1.9	59	87	5	171	41	3	3	51	1.35
26669681--26669718	19	2.0	19	100	0	76	26	0	31	42	1.56
26672602--26672822	79	2.8	80	82	9	256	25	22	26	24	2.00
26672599--26672829	40	5.8	40	83	7	256	25	22	26	24	2.00
26672598--26672855	119	2.2	119	81	6	292	26	22	26	24	2.00
26674696--26674749	26	2.1	26	100	0	108	29	16	14	38	1.89
26677983--26678091	57	1.9	57	90	0	173	44	15	11	28	1.80
26677983--26678105	57	2.2	57	86	2	167	44	16	12	26	1.82
26686597--26686636	5	8.0	5	100	0	80	80	0	0	20	0.72
26690113--26690149	16	2.2	18	85	9	51	54	2	0	43	1.14
26690413--26690455	22	2.0	22	95	0	77	30	25	0	44	1.55
26692293--26692323	16	1.9	16	100	0	62	48	19	0	32	1.49
26695470--26695514	22	2.0	22	83	8	56	40	4	0	55	1.20
26698440--26698512	39	1.9	37	86	10	103	42	4	2	50	1.35
26698504--26698619	61	1.9	59	82	6	144	40	3	6	50	1.44
26704157--26704223	7	9.0	7	74	18	55	76	1	1	20	0.95
26704152--26704233	33	2.6	30	79	14	85	75	1	2	20	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26707508--26707569	6	10.2	6	72	10	54	75	3	3	17	1.07
26730436--26730476	20	2.1	20	90	4	66	70	2	0	26	0.99
26730932--26730960	14	2.1	14	100	0	58	44	20	13	20	1.85
26732559--26732632	17	4.4	17	73	19	64	41	12	6	39	1.69
26732543--26732675	51	2.6	51	79	0	158	42	11	6	39	1.67
26735208--26735309	44	2.4	43	86	4	118	20	21	18	39	1.93
26735225--26735313	44	2.0	44	97	0	169	21	22	16	39	1.92
26736553--26736616	32	2.0	32	100	0	128	25	25	12	37	1.91
26740547--26740733	25	7.5	25	72	5	137	27	14	22	35	1.93
26740547--26740733	50	3.7	49	80	9	173	27	14	22	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189