genome.fa.s20.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  44  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12947151--12947248	26	3.8	26	76	15	98	79	0	20	0	0.73
12947820--12947980	35	4.7	34	75	9	139	29	11	10	47	1.74
12947814--12947980	17	9.6	18	74	13	152	28	12	10	48	1.74
12947941--12948069	39	3.4	38	73	16	124	35	9	12	42	1.75
12957519--12958504	190	5.2	192	95	3	1779	30	13	20	34	1.92
12958462--12958716	91	2.9	89	82	9	299	27	18	18	36	1.94
12958817--12959031	54	4.0	54	88	8	316	29	15	17	37	1.91
12958823--12959031	105	2.0	104	90	4	332	29	16	17	36	1.92
12959272--12959304	13	2.4	14	90	5	50	69	3	0	27	1.03
12959300--12959401	30	3.4	30	86	2	143	29	21	3	45	1.70
12959661--12959705	10	4.4	10	83	5	54	73	0	26	0	0.84
12959669--12959705	16	2.4	15	91	8	65	72	0	27	0	0.84
12959776--12959816	3	13.3	3	94	5	73	68	0	31	0	0.90
12959808--12959838	9	3.3	9	95	4	53	87	0	12	0	0.55
12959955--12960026	16	4.6	15	76	8	65	69	19	8	2	1.27
12959939--12960044	31	3.3	30	79	13	104	70	18	8	1	1.22
12959954--12960028	15	4.7	15	71	18	55	70	18	8	2	1.24
12960139--12960228	15	5.9	15	78	13	87	80	0	20	0	0.72
12960139--12960233	8	13.1	7	80	10	95	80	0	20	0	0.72
12960137--12960231	23	4.3	22	80	11	97	80	0	20	0	0.72
12960816--12960978	17	9.4	17	76	9	150	30	12	9	47	1.74
12960816--12960978	35	4.7	34	79	8	159	30	12	9	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12960939--12961065	34	3.4	38	68	20	97	35	10	12	41	1.77
12963737--12963779	20	2.0	21	86	8	61	18	48	11	20	1.79
12964873--12964910	15	2.5	15	91	0	58	23	0	7	68	1.16
12968578--12968624	24	2.0	24	84	16	62	51	17	0	31	1.46
12969291--12969359	4	17.0	4	74	16	54	2	23	1	72	1.06
12969291--12969334	22	2.1	22	87	8	65	0	25	0	75	0.81
12970847--12970878	16	2.1	16	94	5	57	50	0	0	50	1.00
12971003--12971062	31	1.9	32	86	3	86	68	6	11	13	1.39
12971291--12971341	25	2.1	25	96	3	95	58	11	7	21	1.58
12975565--12975627	30	2.1	30	93	0	108	57	14	3	25	1.52
12977259--12977283	13	1.9	13	100	0	50	76	8	8	8	1.18
12987498--12987541	11	4.2	10	81	18	54	68	9	4	18	1.34
12988530--12988563	14	2.3	14	90	10	50	41	0	2	55	1.15
12989780--12989813	2	17.0	2	100	0	68	50	0	50	0	1.00
12990815--12990847	11	3.0	11	91	8	50	69	0	3	27	1.03
12990971--12991036	3	22.0	3	77	0	69	57	3	6	33	1.38
12992838--12992881	21	2.1	21	86	0	61	22	31	4	40	1.74
12993337--12993519	45	4.1	45	71	2	163	30	25	14	30	1.95
13005629--13005655	8	3.4	8	100	0	54	37	0	11	51	1.37
13005758--13005829	6	12.0	6	84	0	90	59	1	4	34	1.25
13005757--13005829	15	4.9	15	87	0	101	58	1	5	34	1.29
13005758--13005829	9	8.0	9	85	0	90	59	1	4	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13008667--13008723	17	3.2	17	78	9	51	57	1	1	38	1.19
13009297--13009343	10	4.5	10	75	19	51	38	0	2	59	1.09
13009366--13009397	12	2.7	12	95	0	55	28	0	0	71	0.86
13009364--13009405	12	3.6	12	87	3	50	35	0	0	64	0.94
13009435--13009467	15	2.2	15	94	0	57	57	6	3	33	1.38
13014080--13014132	13	4.1	13	76	9	63	37	24	5	32	1.79
13016364--13016413	20	2.5	19	81	9	55	38	0	2	60	1.09
13023884--13023912	2	14.5	2	100	0	58	51	0	0	48	1.00
13026688--13026732	15	3.1	14	87	9	56	24	0	0	75	0.80
13030722--13030820	48	2.1	48	94	0	171	31	27	5	36	1.78
13030908--13030979	36	2.0	36	91	0	117	29	44	0	26	1.55
13033055--13033105	18	2.8	18	69	0	57	15	41	3	39	1.66
13036147--13036198	14	3.7	14	87	5	61	36	15	7	40	1.76
13037817--13037888	29	2.4	30	81	6	85	52	4	9	33	1.53
13041279--13041397	45	2.6	45	83	0	121	43	14	25	16	1.86
13046045--13046090	23	1.9	25	86	8	69	26	6	2	65	1.28
13047245--13047277	17	1.9	17	93	0	57	42	9	9	39	1.68
13061513--13061574	4	15.5	4	73	21	51	22	4	0	72	1.03
13062592--13062637	10	4.7	10	83	2	58	76	2	0	21	0.90
13062592--13062638	16	3.1	16	80	14	55	76	2	0	21	0.89
13065015--13065048	18	2.0	18	88	11	54	32	0	14	52	1.42
13070086--13070119	15	2.2	16	94	5	61	38	0	5	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13072337--13072396	22	2.8	22	85	7	70	16	23	18	41	1.90
13073023--13073115	17	5.6	17	71	14	79	56	2	1	39	1.18
13073089--13073155	26	2.6	26	76	11	75	58	1	0	40	1.07
13073062--13073140	37	2.2	36	84	11	99	58	3	0	37	1.16
13073721--13073759	15	2.6	15	83	0	51	35	25	33	5	1.78
13075813--13075841	2	14.5	2	100	0	58	48	0	0	51	1.00
13088101--13088135	3	11.7	3	100	0	70	68	0	0	31	0.90
13095650--13095725	27	2.9	27	76	2	73	21	21	18	39	1.93
13106890--13106936	21	2.2	22	92	3	78	21	38	19	21	1.94
13115677--13115718	19	2.2	19	86	0	57	57	26	2	14	1.50
13118438--13118468	3	10.3	3	92	0	53	32	3	0	64	1.09
13119941--13120009	22	3.2	21	85	4	68	36	8	4	50	1.53
13119951--13120009	22	2.7	22	89	0	82	37	10	3	49	1.54
13120589--13120790	109	1.9	109	93	2	352	29	17	19	33	1.95
13128363--13128501	44	3.2	44	68	8	120	28	25	22	24	2.00
13128307--13128701	88	4.5	87	87	3	476	29	23	23	24	1.99
13128351--13128489	45	3.1	45	68	12	124	31	22	23	23	1.98
13128835--13128951	44	2.7	43	81	6	137	28	23	23	23	2.00
13130517--13130577	22	2.9	21	87	4	70	39	8	1	50	1.42
13130527--13130577	22	2.3	22	93	0	84	41	9	0	49	1.36
13131160--13131361	109	1.9	109	93	2	352	29	17	20	33	1.95
13144770--13144946	46	3.8	46	90	1	275	38	10	22	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13148736--13148769	5	6.8	5	100	0	68	41	0	0	58	0.98
13149856--13149928	27	2.6	28	77	18	71	21	2	32	42	1.67
13157353--13157386	17	1.9	18	88	5	52	35	2	5	55	1.39
13157341--13157412	30	2.4	31	80	15	89	38	4	2	54	1.34
13157375--13157409	17	2.0	18	94	5	63	40	0	2	57	1.14
13158192--13158216	6	4.2	6	100	0	50	52	0	0	48	1.00
13158563--13158702	70	2.0	70	92	1	237	42	13	7	37	1.72
13162389--13162415	4	6.8	4	100	0	54	22	0	0	77	0.76
13165501--13165561	21	2.9	21	95	0	113	52	0	14	32	1.42
13169942--13169985	18	2.3	19	84	7	54	72	2	0	25	0.96
13169944--13170026	28	3.1	25	79	16	87	73	1	2	22	1.02
13169944--13170027	27	3.1	26	78	10	89	73	1	2	22	1.01
13169995--13170037	22	1.9	23	85	4	61	67	2	2	27	1.15
13170235--13170282	22	2.2	22	85	3	62	31	0	4	64	1.12
13170285--13170309	12	2.1	12	100	0	50	44	0	0	56	0.99
13170291--13170335	23	2.0	23	86	0	63	35	0	2	62	1.08
13171196--13171301	19	5.7	19	73	19	66	66	0	3	29	1.16
13171202--13171284	29	2.9	28	75	15	80	63	1	4	30	1.22
13171202--13171276	10	7.7	10	74	15	68	62	1	5	30	1.25
13173388--13173452	32	2.0	32	96	0	121	35	18	10	35	1.86
13174683--13174733	26	2.0	26	84	3	68	58	0	1	39	1.09
13182289--13182332	22	2.0	22	90	0	70	22	9	9	59	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13182307--13182336	13	2.3	13	100	0	60	13	6	6	73	1.24
13185248--13185388	44	3.1	44	71	16	153	46	3	3	46	1.37
13185278--13185417	44	3.1	45	70	20	139	45	2	3	48	1.34
13185223--13185464	91	2.7	91	94	3	420	47	3	2	46	1.34
13185480--13186120	120	5.4	120	95	1	1130	43	2	5	48	1.40
13186269--13186365	44	2.2	45	85	5	126	34	27	5	32	1.79
13186575--13186626	18	2.8	18	72	16	52	36	1	0	61	1.07
13189359--13189432	33	2.2	33	85	0	94	41	24	8	25	1.82
13190666--13190793	64	2.0	64	96	0	238	41	15	21	21	1.90
13192261--13192314	18	2.9	18	83	2	63	14	1	42	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189