genome.fa.s20.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  161  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48353606--48353636	12	2.6	12	94	0	53	19	41	3	35	1.67
48355155--48355198	22	2.0	22	82	8	54	59	11	2	27	1.44
48356005--48356053	25	1.9	26	95	4	91	59	0	8	32	1.27
48358887--48358931	23	2.0	23	86	8	65	46	4	8	40	1.55
48360058--48360110	27	2.0	27	96	0	97	18	11	56	13	1.66
48361970--48362002	16	2.0	17	88	5	50	54	0	0	45	0.99
48361999--48362063	32	2.0	32	85	5	87	46	9	4	40	1.57
48362226--48362292	28	2.3	29	97	2	127	38	10	0	50	1.37
48362340--48362398	27	2.2	27	87	0	82	30	25	28	15	1.96
48363391--48363424	10	3.4	10	92	8	52	11	5	0	82	0.83
48364143--48364186	16	2.7	16	78	3	52	31	6	0	61	1.22
48366007--48366031	13	1.9	13	100	0	50	32	8	12	48	1.69
48366061--48366102	19	2.2	19	83	8	50	28	21	9	40	1.84
48368897--48368929	7	4.7	7	85	14	50	72	0	15	12	1.12
48368897--48368945	21	2.3	21	83	13	57	69	0	16	14	1.19
48370088--48370865	132	5.9	132	92	0	1236	29	18	23	28	1.98
48371765--48371798	10	3.4	10	92	8	52	11	5	0	82	0.83
48372399--48372444	18	2.6	18	77	16	51	28	4	2	65	1.23
48372516--48372562	17	2.7	18	74	9	53	31	6	0	61	1.21
48373501--48373596	19	5.2	19	77	9	117	37	12	1	48	1.48
48373501--48373596	37	2.6	37	98	0	183	37	12	1	48	1.48
48373632--48373688	19	3.1	19	79	5	80	50	0	12	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48374240--48374308	27	2.6	27	95	0	120	14	31	23	30	1.94
48374389--48374447	27	2.2	27	84	0	73	15	27	25	32	1.95
48374166--48374447	147	1.9	147	93	0	483	26	22	18	32	1.97
48374482--48374538	29	2.0	29	93	3	98	38	0	5	56	1.22
48381008--48381057	21	2.4	21	89	0	73	26	0	40	34	1.56
48387801--48387843	19	2.3	19	92	4	70	48	11	11	27	1.74
48391227--48391280	21	2.6	21	78	0	63	50	3	5	40	1.44
48391247--48391302	24	2.3	25	87	3	87	50	5	1	42	1.35
48398329--48398496	47	3.7	46	74	18	152	46	2	2	48	1.30
48398377--48398437	28	2.2	28	85	5	81	45	0	3	50	1.17
48398377--48398537	54	3.1	53	71	17	149	45	1	3	49	1.25
48398479--48398513	18	2.0	17	88	5	52	45	0	0	54	0.99
48398485--48398659	39	4.3	41	68	19	116	42	1	4	51	1.29
48398512--48398693	59	3.1	59	65	17	158	40	2	6	51	1.40
48398516--48398705	66	3.1	65	66	22	172	41	2	6	48	1.43
48398478--48398726	120	2.1	120	94	0	435	41	2	6	50	1.38
48398539--48398726	61	3.1	62	65	23	146	39	2	7	50	1.42
48398608--48398658	15	3.5	15	81	7	52	45	0	1	52	1.12
48398728--48398818	45	2.0	45	87	6	132	36	27	3	32	1.73
48398797--48398843	16	2.9	16	90	0	76	25	36	2	36	1.68
48400062--48400095	5	6.6	5	96	3	59	20	0	0	79	0.73
48406268--48406326	29	2.0	29	93	0	100	38	11	0	49	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48407441--48407477	19	1.9	19	88	0	56	18	10	16	54	1.71
48410550--48410582	5	6.4	5	96	3	57	21	0	0	78	0.75
48414270--48414325	29	1.9	29	96	0	103	19	14	17	48	1.81
48416924--48417372	242	1.9	243	94	1	794	40	11	21	27	1.87
48420858--48420953	41	2.4	39	89	8	142	31	14	17	36	1.90
48425752--48425781	5	5.8	5	96	4	51	40	0	0	60	0.97
48436436--48436487	9	5.8	9	95	0	86	38	28	9	23	1.86
48442883--48442925	18	2.2	19	84	12	52	16	0	9	74	1.06
48443390--48443465	36	2.1	34	81	11	82	59	0	0	40	0.98
48445575--48445634	31	1.9	32	86	10	88	25	11	10	53	1.68
48445858--48445894	18	2.0	18	89	5	56	37	0	0	62	0.96
48447071--48447127	28	2.0	29	83	10	73	59	0	8	31	1.28
48458599--48458671	34	2.2	33	80	9	85	21	21	24	31	1.98
48458937--48459008	27	2.7	27	82	2	92	34	16	16	31	1.92
48460662--48460709	23	2.1	23	96	0	87	22	25	18	33	1.97
48465568--48466080	257	2.0	257	98	0	981	33	19	18	27	1.96
48468012--48468063	20	2.7	20	81	3	61	34	15	30	19	1.93
48468713--48468743	7	4.4	7	100	0	62	12	0	45	41	1.42
48470660--48470684	11	2.3	11	100	0	50	20	0	72	8	1.10
48470720--48470745	12	2.2	12	100	0	52	61	0	0	38	0.96
48473018--48473042	2	12.5	2	100	0	50	52	0	48	0	1.00
48474879--48475558	341	2.0	339	92	1	1137	42	7	14	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48477046--48477129	6	13.8	6	85	1	114	54	0	28	16	1.42
48481449--48481527	22	3.6	22	82	0	95	16	21	16	45	1.85
48490638--48490923	50	5.7	50	82	2	299	22	28	22	26	1.99
48490861--48490986	63	2.0	63	92	0	207	23	29	22	25	1.99
48493159--48493237	29	2.8	29	78	5	81	55	2	8	32	1.44
48495087--48495275	50	3.8	49	77	8	193	22	18	23	35	1.96
48495023--48495273	100	2.5	101	86	0	342	23	19	23	33	1.97
48495433--48495555	44	2.8	44	83	0	147	29	25	17	27	1.98
48495268--48495664	219	1.8	219	90	2	645	29	22	17	30	1.97
48495673--48496356	128	5.3	127	92	2	1091	25	22	19	32	1.97
48498550--48498624	6	12.7	6	84	8	64	12	8	9	70	1.33
48498569--48498630	29	2.2	29	85	2	81	11	4	11	72	1.26
48502858--48502936	29	2.7	30	77	11	85	54	2	10	32	1.47
48514883--48514945	30	2.1	30	93	0	108	28	3	11	57	1.49
48515059--48515092	12	2.8	12	90	0	50	67	0	0	32	0.91
48525043--48525453	120	3.4	119	87	2	563	45	27	14	12	1.80
48525043--48525453	40	10.3	40	85	1	500	45	27	14	12	1.80
48536004--48536452	230	2.0	219	88	5	666	33	11	16	38	1.85
48537511--48537626	58	2.0	59	81	8	139	29	18	5	47	1.70
48538940--48539030	41	2.2	41	86	5	130	26	24	21	27	1.99
48539154--48539607	230	2.0	230	95	0	827	32	11	17	38	1.86
48540653--48540683	15	2.1	15	93	0	53	9	12	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48540676--48540785	57	1.9	59	83	7	145	30	19	5	44	1.73
48542090--48542197	41	2.6	41	91	1	162	22	25	22	30	1.99
48542129--48542433	70	4.4	70	82	4	314	23	21	20	34	1.97
48542132--48542439	140	2.2	139	84	0	382	24	20	20	34	1.97
48546836--48546872	3	12.3	3	100	0	74	67	0	0	32	0.91
48547828--48547862	13	2.8	12	91	8	61	51	2	0	45	1.16
48562733--48563066	27	12.4	26	78	6	224	47	19	15	17	1.83
48562732--48563066	81	4.1	82	79	5	333	47	19	15	17	1.82
48562762--48563067	54	5.7	53	80	5	310	47	19	15	18	1.83
48568792--48568932	54	2.6	54	83	6	169	43	18	19	19	1.89
48568792--48568932	27	5.2	26	84	5	149	43	18	19	19	1.89
48569309--48569368	28	2.2	27	87	3	84	23	25	25	26	2.00
48571713--48571754	21	2.0	21	90	0	66	26	16	26	30	1.97
48576075--48576099	13	1.9	13	100	0	50	64	4	0	32	1.12
48578561--48578614	28	2.0	28	86	10	78	44	5	3	46	1.44
48578643--48578693	25	2.0	26	84	3	68	35	7	5	50	1.55
48580015--48580059	23	1.9	24	86	4	65	26	51	2	20	1.59
48582905--48582957	27	2.0	27	82	14	65	45	3	0	50	1.19
48584120--48584183	27	2.4	27	97	0	119	40	6	0	53	1.26
48584184--48584253	27	2.6	27	86	0	86	37	20	27	15	1.93
48584456--48584516	18	3.5	18	78	15	74	44	9	0	45	1.37
48584470--48584519	15	3.1	15	82	8	55	44	12	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48584527--48584598	23	3.2	23	65	31	64	43	0	15	41	1.46
48584525--48584613	45	2.0	45	100	0	178	43	0	15	40	1.47
48584835--48585093	41	6.4	41	77	7	224	23	18	24	33	1.97
48584833--48585043	81	2.6	82	78	9	218	23	19	24	32	1.97
48585209--48585589	187	2.0	185	97	1	726	48	4	8	38	1.53
48585860--48585897	14	2.7	14	88	8	51	23	0	42	34	1.55
48585748--48585983	126	1.8	130	83	4	318	30	0	26	42	1.61
48586163--48586251	28	3.1	28	70	22	85	43	0	7	48	1.32
48587279--48587310	16	1.9	17	93	6	57	6	6	18	68	1.32
48587317--48587379	26	2.4	27	91	2	110	49	0	9	41	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189