genome.fa.s20.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  34  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10496697--10496877	25	7.1	25	70	22	85	44	15	1	39	1.54
10496592--10496802	115	1.8	115	96	0	395	45	15	0	39	1.50
10496771--10496819	16	3.1	16	100	0	98	44	24	0	30	1.54
10496655--10496979	131	2.6	125	84	10	405	44	14	0	40	1.52
10496659--10497009	65	5.5	66	77	14	258	44	15	0	39	1.52
10496532--10496670	31	4.4	31	80	10	165	48	12	0	38	1.47
10496987--10497033	16	2.8	17	87	12	71	46	25	0	27	1.53
10497083--10497194	25	4.6	25	76	8	104	45	16	1	35	1.59
10497049--10497168	34	3.4	34	74	14	100	45	16	1	35	1.58
10497089--10497208	16	7.9	16	69	19	96	45	17	1	35	1.58
10502633--10502798	66	2.5	65	85	4	217	41	18	25	14	1.88
10502774--10502846	21	3.5	21	76	0	65	36	17	39	5	1.73
10502785--10502886	42	2.4	42	81	3	107	34	15	41	8	1.78
10502822--10502886	21	3.1	21	75	0	76	29	15	44	10	1.80
10503201--10503401	87	2.3	86	82	3	233	24	16	30	27	1.97
10503194--10503525	43	7.7	43	75	2	209	23	20	28	27	1.99
10503644--10503686	22	2.0	22	85	0	59	44	25	18	11	1.84
10507607--10507635	5	5.8	5	100	0	58	37	0	0	62	0.96
10511512--10511563	23	2.2	23	96	3	95	46	9	15	28	1.77
10511589--10511748	3	52.7	3	71	7	65	58	3	8	29	1.44
10511636--10511740	18	5.4	19	71	14	72	58	2	10	28	1.46
10511778--10511824	15	2.9	16	81	9	51	61	4	4	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10511837--10511862	7	3.7	7	100	0	52	73	11	0	15	1.11
10511834--10511869	14	2.6	14	83	16	56	72	8	0	19	1.10
10511920--10511945	4	6.5	4	100	0	52	76	0	0	23	0.78
10519141--10519182	20	2.1	20	100	0	84	47	9	14	28	1.75
10519269--10519315	23	2.0	23	83	0	58	31	0	2	65	1.04
10522435--10522475	3	13.7	3	100	0	82	34	0	0	65	0.93
10529299--10529358	11	5.2	11	73	15	50	73	0	8	18	1.08
10529713--10529750	19	2.0	19	100	0	76	10	21	10	57	1.61
10530797--10531264	94	5.0	95	80	5	486	29	20	19	31	1.97
10530930--10531016	44	2.0	44	86	8	124	31	22	17	28	1.97
10547788--10547980	50	3.7	49	81	6	188	27	21	26	23	1.99
10547794--10547980	100	1.8	102	82	6	243	27	20	27	23	1.99
10548229--10548267	4	9.8	4	82	0	51	51	2	23	23	1.61
10548230--10548268	20	2.0	20	94	0	69	53	2	23	20	1.57
10550466--10551230	382	2.0	382	90	2	1205	33	13	16	36	1.88
10562995--10563021	6	4.5	6	100	0	54	66	0	0	33	0.92
10570040--10570068	3	9.7	3	100	0	58	34	65	0	0	0.93
10573225--10573269	24	1.9	23	81	4	54	60	6	13	20	1.55
10573288--10573413	39	3.2	39	79	10	116	52	0	7	38	1.36
10573385--10573424	16	2.5	16	83	0	53	62	0	2	35	1.09
10573392--10573416	12	2.1	12	100	0	50	60	0	0	40	0.97
10574463--10574498	13	3.0	12	88	11	56	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10575087--10575124	6	6.2	6	93	6	67	52	0	0	47	1.00
10581679--10581721	22	2.0	22	82	13	54	69	13	2	13	1.28
10585557--10585595	19	2.1	19	90	0	60	30	0	15	53	1.42
10592206--10592243	19	2.0	19	100	0	76	42	15	0	42	1.47
10593011--10593056	23	2.0	24	82	4	58	32	26	0	41	1.56
10593632--10593665	16	2.0	18	88	11	54	29	20	0	50	1.49
10593965--10594002	5	7.6	5	100	0	76	18	0	0	81	0.69
10594309--10594351	21	2.0	21	81	0	50	58	6	0	34	1.25
10594444--10594506	3	21.7	3	73	12	51	58	3	3	34	1.30
10596610--10597303	44	15.6	44	77	3	541	32	18	20	28	1.96
10598964--10598998	15	2.2	16	90	5	54	17	2	0	80	0.84
10603930--10604001	35	2.1	35	91	0	117	34	9	13	41	1.78
10610360--10611299	44	20.8	44	74	9	561	29	21	15	32	1.94
10610360--10611389	133	7.6	132	75	9	664	30	20	15	33	1.94
10610360--10611299	89	10.4	89	75	8	526	29	21	15	32	1.94
10611078--10611353	140	2.0	140	80	4	315	29	21	15	33	1.94
10611229--10611339	44	2.5	44	86	7	145	31	24	15	28	1.95
10619342--10619384	19	2.2	20	87	4	61	44	6	18	30	1.76
10623236--10623265	15	1.9	16	93	6	53	13	0	16	70	1.18
10624305--10624345	21	1.9	22	95	5	75	24	24	0	51	1.49
10628843--10628868	6	4.3	6	100	0	52	34	50	0	15	1.45
10635733--10636004	46	5.9	47	77	6	184	33	4	21	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10635824--10636149	23	14.2	23	73	9	200	33	4	23	39	1.74
10635798--10636162	46	8.0	46	78	3	268	33	4	23	39	1.74
10636068--10636176	46	2.4	46	82	3	121	34	7	22	35	1.82
10642084--10642110	7	3.9	7	100	0	54	14	14	14	55	1.70
10643486--10643528	3	14.3	3	100	0	86	67	0	0	32	0.91
10665109--10665169	21	2.9	21	78	9	61	55	1	1	40	1.19
10668205--10668367	86	1.9	85	85	6	222	46	7	6	39	1.58
10669584--10669652	31	2.2	31	94	0	120	44	7	18	28	1.76
10669593--10669660	31	2.2	31	91	0	109	45	10	16	27	1.79
10669886--10669928	15	2.8	15	80	16	52	46	2	2	48	1.27
10677195--10677256	31	2.0	32	87	9	92	53	11	9	25	1.67
10677209--10677281	32	2.3	31	81	11	78	54	10	9	24	1.65
10679711--10679814	51	2.0	51	100	0	208	28	21	13	36	1.91
10680137--10680238	53	2.0	50	90	7	161	39	18	10	31	1.85
10682280--10682305	9	2.9	9	100	0	52	80	7	11	0	0.89
10682277--10682326	15	3.3	15	78	10	57	76	4	18	2	1.04
10682276--10682327	9	5.4	9	80	13	50	73	3	21	1	1.10
10686746--10686820	38	2.1	36	82	9	91	58	6	4	30	1.42
10689900--10689952	26	2.0	26	89	7	81	45	0	0	54	0.99
10689941--10689970	6	5.0	6	100	0	60	16	0	0	83	0.65
10690084--10690126	17	2.5	17	92	7	70	23	4	4	67	1.28
10691265--10691321	18	3.1	18	84	5	60	63	3	1	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10691265--10691306	20	2.0	20	86	4	57	57	4	0	38	1.20
10691290--10691326	18	2.0	18	89	5	56	72	2	2	21	1.09
10698074--10698141	31	2.2	31	89	0	100	42	4	14	38	1.66
10699934--10699980	19	2.3	22	78	14	55	36	2	4	57	1.30
10700361--10700410	13	3.2	16	70	18	52	48	0	0	52	1.00
10700421--10700450	14	2.1	14	93	0	51	30	0	3	66	1.07
10708707--10708761	28	2.0	28	92	0	92	27	25	20	27	1.99
10720631--10720676	24	1.9	24	86	0	65	45	0	2	52	1.13
10728693--10728749	25	2.3	23	81	18	71	54	1	0	43	1.10
10728700--10728780	29	2.7	30	72	12	78	58	2	0	39	1.12
10730943--10731011	30	2.3	30	97	0	129	36	4	28	30	1.77
10741857--10741896	17	2.4	17	87	8	55	30	0	12	57	1.36
10764819--10764897	39	2.0	39	100	0	158	34	22	7	35	1.83
10771912--10771960	23	2.1	23	81	7	55	63	0	0	36	0.95
10773407--10773478	31	2.3	31	83	13	85	54	0	1	44	1.08
10779794--10779828	16	2.2	16	89	0	52	17	17	22	42	1.88
10780263--10780309	19	2.5	19	86	6	60	27	19	8	44	1.79
10782990--10783028	19	2.1	19	100	0	78	38	10	25	25	1.87
10784057--10784540	45	10.8	45	85	0	635	30	15	21	32	1.94
10784053--10785257	90	13.6	90	81	5	1058	31	14	21	32	1.93
10784057--10785331	135	9.6	135	84	4	1399	31	15	21	31	1.94
10784512--10784569	29	2.0	29	96	0	107	17	18	27	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10784468--10784614	74	2.0	74	94	0	258	25	16	25	33	1.96
10784423--10784659	119	2.0	119	87	0	339	28	16	22	32	1.95
10784541--10785253	45	15.9	45	85	2	903	32	14	20	32	1.93
10787085--10787113	2	14.5	2	100	0	58	48	0	0	51	1.00
10788030--10788088	31	1.9	31	85	0	82	49	8	3	38	1.50
10788383--10788570	78	2.4	76	93	1	313	36	7	12	43	1.71
10791397--10791449	26	2.0	26	82	7	63	45	3	1	49	1.31
10796271--10796300	15	2.1	15	93	6	53	66	0	6	26	1.16
10800827--10800890	20	3.0	20	75	16	65	68	3	0	28	1.04
10801336--10801381	23	2.0	23	95	0	83	28	8	23	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189