genome.fa.s20.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  177  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52529773--52529859	45	1.9	44	82	13	106	39	4	22	33	1.75
52530046--52530104	26	2.3	26	82	5	75	38	13	16	30	1.88
52535344--52535371	4	7.0	4	100	0	56	25	0	25	50	1.50
52537706--52537753	23	2.1	22	88	3	69	35	10	2	52	1.48
52539108--52539134	10	2.7	10	100	0	54	29	0	7	62	1.22
52540085--52540321	87	2.8	85	77	9	248	37	17	11	32	1.86
52540408--52540551	9	15.4	9	67	17	55	63	2	1	32	1.17
52540441--52540480	20	2.0	20	85	9	55	55	0	0	45	0.99
52540484--52540520	8	4.5	8	90	6	56	72	5	0	21	1.04
52543394--52543427	15	2.3	15	89	0	50	79	5	0	14	0.91
52544855--52544906	21	2.4	22	84	12	63	71	15	5	7	1.29
52544859--52544906	24	2.0	24	88	4	71	70	16	6	6	1.28
52545537--52545580	11	3.9	11	84	3	61	45	2	31	20	1.64
52547710--52547743	3	11.3	3	100	0	68	67	0	0	32	0.91
52556233--52556308	29	2.6	29	81	8	82	48	9	13	28	1.73
52557189--52557215	5	5.4	5	100	0	54	40	40	0	18	1.51
52561228--52561252	13	1.9	13	100	0	50	40	16	28	16	1.89
52561770--52561833	22	2.9	23	69	17	55	54	0	3	42	1.16
52561953--52562011	19	3.1	18	75	20	50	40	1	3	54	1.27
52566004--52566030	4	6.8	4	100	0	54	25	0	22	51	1.48
52580462--52580513	23	2.3	23	83	3	61	44	5	9	40	1.61
52590846--52590885	19	2.1	19	85	0	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52595427--52595466	21	1.9	21	85	10	55	20	17	22	40	1.92
52601604--52601673	25	2.8	25	95	0	122	64	10	11	14	1.50
52601604--52601686	25	3.3	25	87	0	76	65	9	9	15	1.47
52616347--52616381	12	2.9	12	86	0	52	14	8	0	77	0.99
52628056--52628114	29	2.0	29	90	0	91	44	27	15	13	1.84
52631329--52631382	25	2.2	25	86	6	74	25	33	29	11	1.91
52638268--52638382	49	2.3	49	76	5	117	24	15	31	28	1.96
52638907--52639029	49	2.5	49	80	5	133	31	30	13	24	1.94
52641822--52642068	50	4.8	50	78	4	219	28	21	27	22	1.99
52644500--52644542	18	2.3	18	80	4	50	16	13	2	67	1.33
52645324--52645376	17	3.1	18	81	5	56	49	0	1	49	1.12
52645348--52645498	62	2.4	62	95	0	275	50	4	3	41	1.39
52645474--52645525	20	2.8	18	78	21	63	51	3	1	42	1.31
52645509--52645580	38	1.9	37	83	13	94	54	5	1	38	1.33
52645998--52646037	9	4.3	9	90	3	62	40	0	2	57	1.12
52646858--52648606	873	2.0	874	99	0	3455	33	19	12	34	1.89
52676178--52676235	4	14.5	4	100	0	116	50	24	0	25	1.50
52678538--52678593	4	14.0	4	100	0	112	25	0	25	50	1.50
52682287--52682365	39	2.0	39	97	0	149	31	21	20	26	1.98
52684200--52684245	24	1.9	24	82	8	58	56	4	6	32	1.45
52684671--52684732	23	2.7	24	82	7	67	25	3	11	59	1.46
52685145--52685184	21	2.0	19	85	9	53	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52691082--52691151	2	35.0	2	88	0	104	0	55	0	44	0.99
52694103--52694201	50	2.0	50	100	0	198	34	8	12	45	1.71
52694506--52694530	12	2.1	12	100	0	50	28	16	8	48	1.74
52694772--52694853	40	2.0	40	100	0	164	24	24	9	41	1.85
52700378--52700403	2	13.0	2	100	0	52	50	0	0	50	1.00
52701570--52701595	2	13.0	2	100	0	52	50	0	0	50	1.00
52706097--52706133	19	2.0	20	84	10	51	37	2	0	59	1.12
52707798--52707853	17	3.5	17	72	22	57	33	1	0	64	1.04
52707787--52707852	31	2.1	32	88	2	98	36	1	1	60	1.15
52708605--52708800	98	2.0	98	100	0	392	33	14	9	42	1.77
52715342--52715366	2	12.5	2	100	0	50	0	48	0	52	1.00
52722371--52722452	31	3.0	25	70	24	67	43	15	0	40	1.47
52722391--52722467	34	2.4	31	84	6	91	51	11	0	36	1.38
52722698--52722739	14	3.0	14	76	13	50	40	9	11	38	1.75
52722708--52722774	34	1.9	35	87	3	100	35	8	10	44	1.70
52734649--52734688	21	1.9	21	84	0	53	52	0	0	47	1.00
52752617--52752647	5	6.2	5	100	0	62	19	61	19	0	1.35
52759262--52759319	27	2.2	26	87	3	80	36	20	6	36	1.80
52761969--52761997	15	1.9	15	100	0	58	27	27	0	44	1.54
52763109--52763168	30	2.0	30	96	0	111	40	26	5	28	1.77
52763740--52763799	30	2.0	30	83	3	75	41	0	38	20	1.52
52764012--52764048	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52772932--52773035	38	2.6	39	79	15	124	30	3	3	61	1.32
52772942--52773013	19	3.7	19	81	10	83	30	4	4	61	1.34
52778625--52778681	21	2.7	21	89	8	80	1	14	15	68	1.29
52779483--52779514	13	2.5	13	94	0	55	31	0	12	56	1.37
52779609--52779800	50	3.7	50	86	4	240	26	23	29	20	1.99
52785113--52785198	25	3.4	25	76	12	79	36	23	22	18	1.95
52785175--52785277	27	3.8	27	96	0	179	33	19	26	21	1.97
52787468--52787565	23	4.3	23	90	2	162	31	26	21	20	1.98
52787475--52787563	45	2.0	45	95	0	160	31	26	22	19	1.97
52793704--52793735	13	2.5	13	94	0	55	31	0	12	56	1.37
52793828--52794069	50	4.7	50	86	4	297	26	24	29	19	1.99
52793828--52794077	100	2.4	103	88	6	364	26	24	29	20	1.99
52800824--52800855	13	2.5	13	94	0	55	31	0	12	56	1.37
52800950--52801191	50	4.7	50	84	4	288	26	24	29	19	1.98
52800950--52801199	100	2.4	103	87	6	355	26	24	29	20	1.99
52803628--52803747	30	4.0	30	87	1	143	30	16	15	36	1.91
52824017--52824851	417	2.0	416	95	1	1485	32	12	11	42	1.79
52830463--52830513	21	2.4	22	81	12	63	64	3	0	31	1.11
52831547--52831614	28	2.4	28	80	9	77	14	20	10	54	1.69
52831670--52831862	44	4.6	42	76	9	180	39	12	7	39	1.73
52831711--52831829	37	3.1	38	76	10	132	38	10	8	42	1.70
52833653--52833696	20	2.2	20	84	8	54	63	15	15	4	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52848888--52848946	25	2.4	25	86	8	77	6	3	42	47	1.46
52848899--52848946	25	2.0	25	91	4	80	6	4	41	47	1.48
52851413--52851456	20	2.3	19	81	11	54	31	2	9	56	1.43
52852657--52852697	22	1.9	21	85	5	55	34	7	12	46	1.69
52871582--52871623	20	2.1	20	86	8	59	40	7	0	52	1.29
52884273--52884307	3	11.7	3	100	0	70	31	34	0	34	1.58
52887266--52887295	3	10.0	3	100	0	60	33	0	33	33	1.58
52887574--52887766	101	1.9	101	80	4	228	35	16	18	30	1.92
52888292--52888492	106	1.9	106	97	0	384	30	18	19	30	1.96
52888915--52888965	23	2.1	25	85	10	70	50	7	7	33	1.60
52898053--52898091	20	2.0	20	100	0	78	38	30	15	15	1.88
52910172--52910218	20	2.3	21	78	10	53	61	23	4	10	1.46
52911201--52911275	3	24.7	3	71	12	55	26	5	2	65	1.27
52911763--52912082	110	2.9	110	86	1	403	32	15	18	33	1.92
52915440--52915478	18	2.2	18	85	0	51	69	7	7	15	1.35
52915470--52915532	24	2.7	23	75	7	65	76	7	7	7	1.17
52915535--52915559	6	4.2	6	100	0	50	68	0	16	16	1.22
52916490--52916540	7	7.6	7	86	8	79	76	0	11	11	1.02
52916489--52916546	13	4.3	13	81	14	73	75	0	12	12	1.04
52916490--52916546	20	2.8	21	84	7	82	75	0	12	12	1.05
52917830--52918518	87	7.9	85	71	9	322	30	20	21	27	1.98
52917781--52918920	218	5.2	218	90	3	1775	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52918877--52919308	174	2.5	174	96	0	783	30	18	24	27	1.98
52919069--52919482	218	1.9	217	94	0	729	30	19	24	25	1.98
52918670--52919830	85	13.4	85	66	13	334	31	18	22	27	1.97
52918670--52919830	44	26.8	43	69	10	271	31	18	22	27	1.97
52919287--52919828	129	4.2	128	81	4	581	32	19	21	26	1.97
52920227--52920273	24	2.0	24	82	0	58	59	31	0	8	1.27
52920257--52920303	20	2.3	21	78	10	53	61	23	4	10	1.46
52921824--52922120	110	2.7	110	89	0	423	30	13	19	35	1.91
52923460--52923507	24	2.1	22	84	7	60	52	16	2	29	1.56
52923591--52923661	36	2.0	37	86	5	101	28	29	2	39	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189