genome.fa.s20.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  132  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38206441--38206736	59	5.1	58	79	6	319	22	26	12	37	1.91
38206443--38206762	88	3.6	86	77	9	313	23	26	12	37	1.90
38206446--38206705	117	2.2	117	85	6	346	22	26	12	37	1.90
38206451--38206777	29	11.1	29	72	9	178	23	26	12	37	1.91
38210963--38211297	27	12.4	27	85	3	406	42	19	20	17	1.89
38211473--38211546	26	2.8	26	83	0	94	13	22	24	39	1.90
38215789--38216103	29	10.8	29	76	4	265	21	26	13	38	1.91
38215784--38216131	88	4.0	88	84	2	396	22	26	13	37	1.91
38215789--38216105	59	5.4	58	73	5	244	21	26	13	38	1.91
38218290--38218363	36	2.1	36	89	0	112	24	20	13	41	1.88
38221113--38221333	58	3.8	58	74	0	208	37	14	24	23	1.92
38221084--38221333	87	2.9	87	78	1	277	37	13	24	24	1.92
38221084--38221328	29	8.4	29	80	1	188	37	13	24	25	1.91
38222302--38222341	12	3.3	12	100	0	80	25	40	27	7	1.82
38226498--38226545	7	6.9	7	92	0	69	41	4	12	41	1.62
38233583--38233656	36	2.1	36	89	0	112	21	25	16	36	1.94
38233785--38233832	21	2.3	21	92	0	78	56	0	27	16	1.41
38233792--38233838	21	2.2	21	88	0	67	53	2	23	21	1.57
38239696--38239920	40	5.7	40	86	5	278	25	28	22	24	2.00
38239698--38239920	119	1.9	120	84	6	301	25	27	22	24	2.00
38241050--38241169	56	2.1	56	98	0	231	22	23	9	45	1.81
38247203--38247300	47	2.1	46	84	1	124	40	19	16	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38250865--38250920	3	18.7	3	100	0	112	32	0	0	67	0.91
38252224--38252401	88	2.0	88	100	0	356	20	24	20	34	1.96
38260625--38260649	13	1.9	13	100	0	50	16	0	0	84	0.63
38264248--38264820	151	3.8	152	83	4	677	36	20	9	33	1.86
38265625--38268160	151	16.9	153	82	6	2887	36	19	10	33	1.86
38271502--38275033	153	23.1	153	85	2	4474	36	18	10	33	1.86
38271488--38275033	461	7.7	459	86	3	4494	36	18	10	34	1.86
38276280--38276341	3	20.7	3	88	0	61	29	8	35	27	1.85
38279654--38279919	135	2.0	132	88	7	396	28	15	9	46	1.76
38285480--38285534	18	3.1	18	75	0	56	16	36	3	43	1.65
38288072--38288105	15	2.3	15	89	0	50	61	26	0	11	1.30
38288088--38288137	23	2.2	23	88	0	73	58	16	2	24	1.49
38307740--38307894	43	3.6	43	76	8	154	25	18	25	30	1.98
38310338--38310372	15	2.3	15	90	9	54	51	22	0	25	1.48
38311038--38311401	41	8.9	41	92	1	480	33	27	18	20	1.96
38311516--38311696	64	2.9	63	89	8	262	41	17	8	32	1.79
38316960--38316994	15	2.3	15	90	9	54	51	22	0	25	1.48
38317661--38318023	41	8.9	41	92	2	480	33	27	18	19	1.96
38317661--38318023	122	3.0	123	88	2	507	33	27	18	19	1.96
38318138--38318318	64	2.9	63	89	8	262	41	17	8	32	1.79
38320548--38320586	18	2.2	18	100	0	78	33	5	17	43	1.72
38321329--38321489	36	4.4	34	76	17	160	32	0	17	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38321359--38321421	9	7.2	9	77	10	60	31	0	19	49	1.48
38321329--38321421	45	2.1	43	88	7	134	31	0	18	50	1.47
38321365--38321489	34	3.6	36	85	8	170	32	0	16	49	1.52
38321594--38321620	13	2.1	13	100	0	54	37	11	0	51	1.37
38322137--38322174	19	2.0	20	89	5	60	68	2	2	26	1.16
38322553--38322784	72	3.2	72	75	3	243	46	12	6	34	1.67
38325829--38325904	27	2.8	27	83	0	89	30	17	39	13	1.87
38338844--38338872	9	3.2	9	100	0	58	68	0	0	31	0.89
38339127--38339186	30	2.0	31	83	9	79	41	0	38	20	1.52
38339480--38339512	9	3.7	9	95	0	57	33	21	12	33	1.90
38340760--38340823	33	1.9	34	87	6	96	43	17	6	32	1.74
38341711--38341756	11	4.3	10	79	15	56	17	2	17	63	1.42
38341711--38341779	22	3.1	21	83	12	77	17	4	20	57	1.56
38341742--38341794	23	2.3	23	100	0	106	20	7	26	45	1.78
38341744--38341803	23	2.3	26	83	16	72	20	6	23	50	1.71
38342917--38343118	25	8.2	25	74	14	179	50	5	5	37	1.51
38342910--38343092	48	3.8	47	95	1	312	50	6	6	37	1.53
38346531--38346578	26	1.9	25	84	16	64	45	0	2	52	1.12
38346657--38346974	66	5.2	66	68	22	287	41	2	6	49	1.43
38346619--38347031	120	3.4	120	98	0	781	42	2	5	49	1.39
38346864--38346915	15	3.6	15	80	12	56	44	0	1	53	1.11
38346993--38347034	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38346984--38347025	15	2.9	15	82	10	52	47	0	0	52	1.00
38347696--38347767	38	1.9	36	81	10	83	34	1	2	61	1.19
38348464--38348527	17	3.6	17	72	15	58	29	12	12	45	1.79
38348731--38348824	47	2.0	48	93	2	163	17	18	23	41	1.90
38353602--38353665	17	3.6	17	72	15	58	29	12	12	45	1.79
38353869--38353962	47	2.0	48	93	2	163	18	17	22	42	1.89
38356451--38356797	123	2.8	123	92	0	588	29	15	23	32	1.95
38359905--38359929	10	2.5	10	100	0	50	48	0	8	44	1.32
38359913--38360038	55	2.3	55	100	0	252	45	4	11	38	1.62
38360045--38360318	29	10.1	23	75	21	100	28	0	25	45	1.54
38360033--38360257	88	2.6	86	95	2	396	28	0	26	44	1.55
38360033--38360257	59	3.9	58	95	2	398	28	0	26	44	1.55
38360033--38360257	29	7.8	29	96	2	398	28	0	26	44	1.55
38360256--38360325	23	3.7	18	79	18	79	28	0	21	50	1.49
38360364--38360478	36	3.2	36	65	11	92	46	15	4	33	1.66
38360396--38360506	25	4.6	25	68	20	83	45	14	2	37	1.59
38360324--38360508	71	2.6	71	94	0	325	44	14	3	37	1.63
38360602--38360651	21	2.4	21	79	0	55	4	26	32	38	1.75
38360906--38360951	18	2.6	18	82	0	56	39	8	30	21	1.84
38361539--38361563	7	3.6	7	100	0	50	60	12	0	28	1.32
38362653--38362692	21	1.9	21	84	0	53	62	0	0	37	0.95
38362645--38362709	31	2.2	30	94	5	114	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38362710--38362831	51	2.4	51	91	4	192	42	0	28	28	1.56
38362804--38362829	12	2.2	12	100	0	52	38	0	30	30	1.58
38365613--38365638	11	2.4	11	100	0	52	38	7	0	53	1.30
38365644--38365695	22	2.5	22	90	6	81	42	0	0	57	0.98
38367373--38367546	85	2.0	85	97	0	330	17	14	15	51	1.76
38369412--38369450	7	5.6	7	100	0	78	25	15	46	12	1.81
38369841--38370058	9	23.9	9	70	16	80	61	2	2	33	1.25
38369931--38369960	15	1.9	16	93	6	53	60	0	3	36	1.14
38369955--38370007	21	2.5	21	81	9	63	52	5	1	39	1.36
38371643--38371708	29	2.3	28	78	5	69	43	16	9	30	1.79
38373394--38373434	23	1.9	22	85	14	59	7	26	7	58	1.51
38376383--38376553	84	2.0	84	98	0	333	37	16	23	21	1.94
38379375--38379478	9	11.4	9	72	17	81	66	0	0	31	1.05
38379389--38379453	19	3.4	18	81	10	76	64	0	0	35	0.94
38379389--38379480	19	5.0	18	76	11	71	63	1	1	34	1.09
38379667--38379734	3	22.7	3	100	0	136	67	0	0	32	0.91
38380034--38380096	31	2.0	32	96	3	119	42	15	9	31	1.79
38386174--38386267	31	3.0	31	98	1	179	42	15	9	31	1.80
38386705--38386740	18	1.9	19	88	5	56	27	5	0	66	1.13
38386724--38386826	48	2.1	48	85	7	138	33	5	0	60	1.27
38386765--38386905	10	14.6	9	68	17	52	36	3	1	58	1.24
38386793--38386843	19	2.7	20	78	6	61	31	3	1	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38386771--38386865	28	3.4	26	77	16	84	35	4	1	58	1.24
38386732--38386874	48	2.9	47	79	14	137	34	5	0	59	1.26
38386737--38386895	48	3.3	47	77	15	123	35	5	0	59	1.24
38387280--38387326	15	3.3	14	80	11	51	36	2	12	48	1.53
38394521--38394572	16	3.3	16	76	10	54	61	0	23	15	1.33
38394530--38394574	16	2.9	16	80	3	56	62	0	22	15	1.33
38409810--38409886	38	2.0	38	100	0	154	22	33	5	38	1.76
38415314--38415682	44	7.9	44	66	14	159	34	19	18	27	1.95
38415169--38415699	142	3.7	142	91	1	830	35	18	19	26	1.95
38415355--38415541	98	1.9	98	81	2	223	33	19	19	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189